A segmented basis set of quadruple zeta valence quality plus polarization functions(QZP)for H through Xe was developed to be used in conjunction with the ZORA Hamiltonian.This set was augmented with diffuse functions ...A segmented basis set of quadruple zeta valence quality plus polarization functions(QZP)for H through Xe was developed to be used in conjunction with the ZORA Hamiltonian.This set was augmented with diffuse functions to describe electrons farther away from the nuclei adequately.Using the ZORA-CCSD(T)/QZP-ZORA theoretical model,atomic ionization energies and bond lengths,harmonic vibrational frequencies,and atomization energies of some molecules were calculated.The addition of core-valence corrections has been shown to improve the agreement between theoretical and experimental results for molecular properties.For atomization energies,a similar observation emerges when considering spin-orbit couplings.With the augmented QZP-ZORA set,static mean dipole polarizabilities of a set of atoms were calculated and compared with previously published recommended and experimental values.Performance evaluations of the ZORA and Douglas–Kroll–Hess Hamiltonians were made for each property studied.展开更多
Segmented all-electron basis set of triple zeta valence quality plus polarization functions(TZP)for the elements of the fifth row to be used together with the zero-order regular approximation(ZORA)is carefully constru...Segmented all-electron basis set of triple zeta valence quality plus polarization functions(TZP)for the elements of the fifth row to be used together with the zero-order regular approximation(ZORA)is carefully constructed.To correctly describe electrons distant from atomic nuclei,the basis set is augmented with diffuse functions giving rise to a set designated as ATZP-ZORA.At the ZORA-B3LYP theoretical level,these sets are used to calculate the ionization energy and mean dipole polarizability of some atoms,bond length,dissociation energy,and harmonic vibrational frequency of diatomic molecules.Then,these results are compared with the theoretical and experimental data found in the literature.Even considering that our sets are relatively compact,they are sufficiently accurate and reliable to perform property calculations involving simultaneously electrons from the inner shell and outer shell.The performances of the ZORA and second-order Douglas-Kroll-Hess Hamiltonians are evaluated and the results are also discussed.展开更多
The Metric of a graph plays an essential role in the arrangement of different dimensional structures and finding their basis in various terms.The metric dimension of a graph is the selection of the minimum possible nu...The Metric of a graph plays an essential role in the arrangement of different dimensional structures and finding their basis in various terms.The metric dimension of a graph is the selection of the minimum possible number of vertices so that each vertex of the graph is distinctively defined by its vector of distances to the set of selected vertices.This set of selected vertices is known as the metric basis of a graph.In applied mathematics or computer science,the topic of metric basis is considered as locating number or locating set,and it has applications in robot navigation and finding a beacon set of a computer network.Due to the vast applications of this concept in computer science,optimization problems,and also in chemistry enormous research has been conducted.To extend this research to a four-dimensional structure,we studied the metric basis of the Klein bottle and proved that the Klein bottle has a constant metric dimension for the variation of all its parameters.Although the metric basis is variying in 3 and 4 values when the values of its parameter change,it remains constant and unchanged concerning its order or number of vertices.The methodology of determining the metric basis or locating set is based on the distances of a graph.Therefore,we proved the main theorems in distance forms.展开更多
A non-orthogonal predefined exponential basis set is used to handle half-bounded domains in multi domain spectral method (MDSM). This approach works extremely well for real-valued semi-infinite differential problems. ...A non-orthogonal predefined exponential basis set is used to handle half-bounded domains in multi domain spectral method (MDSM). This approach works extremely well for real-valued semi-infinite differential problems. It spans simultaneously wide range of exponential decay rates with multi scaling and does not suffer from zero crossing. These two conditions are necessary for many physical problems. For comparison, the method is used to solve different problems and compared with analytical and published results. The comparison exhibits the strengths and accuracy of the presented basis set.展开更多
A scheme based on treating uniform singlet-pair and triplet-pair interactions is suggested to extrapolate electron correlation energy of ammonia, calculated at two basis-set levels of ab initio theory in the infinite ...A scheme based on treating uniform singlet-pair and triplet-pair interactions is suggested to extrapolate electron correlation energy of ammonia, calculated at two basis-set levels of ab initio theory in the infinite one-electron basis-set limit. The dual-level method is tested on the extrapolation of the full correlation in coupled-cluster singles and doubles and in the case also a noniterative perturbative correction for connected triple energies for the C3v and D3h structures of ammonia, with correlation-consistent basis sets of the type cc-pVXZ (X = D, T, Q, 5, 6) and aug-cc-pVXZ (X = D, T, Q, 5). For testing and comparison purposes, the energies reported by Klopper [J. Comput. Chem. 22 1306 (2001)] have been taken. From a corresponding extrapolation of CCSD(T)/AVXZ energies for X = 4, 5, we obtain total inversion barriers of 1833.87 cm-1/1832.33 cm^-1 for the two/three-parameter extrapolation rules, which are in good agreement with other theoretical extrapolation and empirical values in the literature.展开更多
Recent experimental evidence suggests again the existence of the metastable methane anion in plasma swarms. In order to test the reliability of the complete basis set (CBS) extrapolation scheme with augmented correlat...Recent experimental evidence suggests again the existence of the metastable methane anion in plasma swarms. In order to test the reliability of the complete basis set (CBS) extrapolation scheme with augmented correlation-consistent basis sets for anionic molecules, we study the evolution of the electron affinity of methane with benchmark ab initio calculations with aug-cc basis sets up to aug-cc-pV6Z + diffuse. Geometry optimizations and vibrational analysis were done at the MP2 level. The electron affinity (EA) was calculated at the MP2 and CCSD(T) levels with and without frozen core and including the extrapolations to the CBS limit. Using the aug-cc-pVnZ basis sets it is found that two non-decreasing CCSD(T) CBS limits exist for the EA (0.29 and 0.53 eV) obtained with the n = 3, 4, 5 and n = 4, 5, 6 series, respectively. A new scheme is proposed which can be generalized for very accurate quantum chemical description of molecular anions: the standard aug-cc-pVnZ basis sets can be supplemented with extra-diffuse orbitals using a simple even-tempered scheme. This yields a reliable CBS extrapolation method to develop a (discrete approximation of a) continuum anionic state near ionization, viz., one that closely matches the energy of the corresponding neutral state. These results show that CH4 has no stable anions of 2A1 symmetry, implying that plasma swarms with anionic methane consist of metastable rather than stable methane anions.展开更多
A DFT conformational and vibrational analysis of a single molecule of cisplatin (cis-[Pt(NH3)2Cl2]) was performed by means of PW91 functional and LANL08 ECP basis set for the Pt atom. 3-21G and 3-21G* Basis sets were ...A DFT conformational and vibrational analysis of a single molecule of cisplatin (cis-[Pt(NH3)2Cl2]) was performed by means of PW91 functional and LANL08 ECP basis set for the Pt atom. 3-21G and 3-21G* Basis sets were used for the remaining atoms. All the initially chosen conformations were found to converge to the global minimum conformation of C2v symmetry with H atoms lying in the coordination plane and pointing to the Cl atoms. The computational results were compared with the newest experimental structural data and with the vibrational spectroscopic data for cisplatin, obtained by other workers. The chosen level of theory was found to describe satisfactory the molecular structure (r. m. s. of the relative deviations ≤ 6%) and the harmonic vibrational frequencies (r. m. s. of the relative deviations ≤ 5%) of cisplatin.展开更多
Recently,more attention have been paid on the construction of dipole moment functions(DMF)using theoretical methods.However,the computational methods to construct DMFs are not validated as much as those for potential ...Recently,more attention have been paid on the construction of dipole moment functions(DMF)using theoretical methods.However,the computational methods to construct DMFs are not validated as much as those for potential energy surfaces do.In this letter,using Ar…He as an example,we tested how spectroscopyaccuracy DMFs can be constructed using ab initio methods.We especially focused on the basis set dependency in this scenario,i.e.,the convergence of DMF with the sizes of basis sets,basis set superposition error,and mid-bond functions.We also tested the explicitly correlated method,which converges with smaller basis sets than the conventional methods do.This work can serve as a pictorial sample of all these computational technologies behaving in the context of constructing DMFs.展开更多
Valence and all electron correlation energies of a large set of atoms and molecules with structural motifs from amino acids and peptides at their equilibrium as well as non-equilibrium geometries are calculated at the...Valence and all electron correlation energies of a large set of atoms and molecules with structural motifs from amino acids and peptides at their equilibrium as well as non-equilibrium geometries are calculated at the levels of MP2, RI-MP2, and CCSD (T) with Dunnings sequential correlation consistent basis sets. A two point basis set extrapolation scheme for correlation energies to the complete basis set limit based on only DZ (double-zeta) and TZ (triple-zeta) results is presented and analyzed. We show that this basis set extrapolation scheme reduces the computational cost by two to three orders of magnitude to obtain the same accuracy as simpler extrapolations from higher order basis set computations.展开更多
Rough set (RS) and radial basis function neural network (RBFNN) based insulation data mining fault diagnosis for power transformer is proposed. On the one hand rough set is used as front of RBFNN to simplify the input...Rough set (RS) and radial basis function neural network (RBFNN) based insulation data mining fault diagnosis for power transformer is proposed. On the one hand rough set is used as front of RBFNN to simplify the input of RBFNN and mine the rules. The mined rules whose “confidence” and “support” is higher than requirement are used to offer fault diagnosis service for power transformer directly. On the other hand the mining samples corresponding to the mined rule, whose “confidence and support” is lower than requirement, are used to be training samples set of RBFNN and these samples are clustered by rough set. The center of each clustering set is used to be center of radial basis function, i.e., as the hidden layer neuron. The RBFNN is structured with above base, which is used to diagnose the case that can not be diagnosed by mined simplified valuable rules based on rough set. The advantages and effectiveness of this method are verified by testing.展开更多
量子力学中的Roothaan-Hartree-Fock(R-H-F)近似计算在原子、分子和材料电子结构计算中具有重要的意义,是其他高精度电子结构计算方法的基础.本工作根据开源网站Basis Set Exchange中丰富的基组资源,利用高斯型基组矩阵元具有解析表达...量子力学中的Roothaan-Hartree-Fock(R-H-F)近似计算在原子、分子和材料电子结构计算中具有重要的意义,是其他高精度电子结构计算方法的基础.本工作根据开源网站Basis Set Exchange中丰富的基组资源,利用高斯型基组矩阵元具有解析表达式的特性,自行编写Roothaan-Hartree-Fock计算程序,可以较为方便的达到高精度的计算结果.同时本工作用不同大小的基组计算了多种原子和离子的基态能量,研究了He、Be、C2+等原子和离子在不同基组下的收敛特性.此外,基于自行编写的R-H-F程序计算得到He、Be、Ne的第一电离能,与实验对比最大误差不超过6.84%.展开更多
In real space density functional theory calculations,the effective potential depends on the electron density,requiring self-consistent iterations,and numerous integrals at each step,making the process time-consuming.I...In real space density functional theory calculations,the effective potential depends on the electron density,requiring self-consistent iterations,and numerous integrals at each step,making the process time-consuming.In our research,we propose an optimization method to expedite density functional theory(DFT)calculations for systems with large aspect ratios,such as metallic nanorods,nanowires,or scanning tunneling microscope tips.This method focuses on employing basis set to expand the electron density,Coulomb potential,and exchange-correlation potential.By precomputing integrals and caching redundant results,this expansion streamlines the integration process,significantly accelerating DFT computations.As a case study,we have applied this optimization to metallic nanorod systems of various radii and lengths,obtaining corresponding ground-state electron densities and potentials.展开更多
For a perspective set that is derived by finite consequences with probabilities, this paper introduces the conception of basis that is proved and the uniqueness of basis over a perspective set holds. These give the ch...For a perspective set that is derived by finite consequences with probabilities, this paper introduces the conception of basis that is proved and the uniqueness of basis over a perspective set holds. These give the characteristic properties of perspective sets and finite consequences with probabilities. These properties are applied to the utility defined by the consequences.展开更多
A novel method based on rough sets (RS) and the affinity propagation (AP) clustering algorithm is developed to optimize a radial basis function neural network (RBFNN). First, attribute reduction (AR) based on RS theor...A novel method based on rough sets (RS) and the affinity propagation (AP) clustering algorithm is developed to optimize a radial basis function neural network (RBFNN). First, attribute reduction (AR) based on RS theory, as a preprocessor of RBFNN, is presented to eliminate noise and redundant attributes of datasets while determining the number of neurons in the input layer of RBFNN. Second, an AP clustering algorithm is proposed to search for the centers and their widths without a priori knowledge about the number of clusters. These parameters are transferred to the RBF units of RBFNN as the centers and widths of the RBF function. Then the weights connecting the hidden layer and output layer are evaluated and adjusted using the least square method (LSM) according to the output of the RBF units and desired output. Experimental results show that the proposed method has a more powerful generalization capability than conventional methods for an RBFNN.展开更多
基金the financial support of Conselho Nacional de Desenvolvimento Científico e Tecnológico and Coordenacao de Aperfeic oamento de Pessoal de Nível Superior (Brazilian Agencies)。
文摘A segmented basis set of quadruple zeta valence quality plus polarization functions(QZP)for H through Xe was developed to be used in conjunction with the ZORA Hamiltonian.This set was augmented with diffuse functions to describe electrons farther away from the nuclei adequately.Using the ZORA-CCSD(T)/QZP-ZORA theoretical model,atomic ionization energies and bond lengths,harmonic vibrational frequencies,and atomization energies of some molecules were calculated.The addition of core-valence corrections has been shown to improve the agreement between theoretical and experimental results for molecular properties.For atomization energies,a similar observation emerges when considering spin-orbit couplings.With the augmented QZP-ZORA set,static mean dipole polarizabilities of a set of atoms were calculated and compared with previously published recommended and experimental values.Performance evaluations of the ZORA and Douglas–Kroll–Hess Hamiltonians were made for each property studied.
基金the Conselho Nacional de Desenvolvimento Científico Tecnológico(Brazilian Agency)。
文摘Segmented all-electron basis set of triple zeta valence quality plus polarization functions(TZP)for the elements of the fifth row to be used together with the zero-order regular approximation(ZORA)is carefully constructed.To correctly describe electrons distant from atomic nuclei,the basis set is augmented with diffuse functions giving rise to a set designated as ATZP-ZORA.At the ZORA-B3LYP theoretical level,these sets are used to calculate the ionization energy and mean dipole polarizability of some atoms,bond length,dissociation energy,and harmonic vibrational frequency of diatomic molecules.Then,these results are compared with the theoretical and experimental data found in the literature.Even considering that our sets are relatively compact,they are sufficiently accurate and reliable to perform property calculations involving simultaneously electrons from the inner shell and outer shell.The performances of the ZORA and second-order Douglas-Kroll-Hess Hamiltonians are evaluated and the results are also discussed.
文摘The Metric of a graph plays an essential role in the arrangement of different dimensional structures and finding their basis in various terms.The metric dimension of a graph is the selection of the minimum possible number of vertices so that each vertex of the graph is distinctively defined by its vector of distances to the set of selected vertices.This set of selected vertices is known as the metric basis of a graph.In applied mathematics or computer science,the topic of metric basis is considered as locating number or locating set,and it has applications in robot navigation and finding a beacon set of a computer network.Due to the vast applications of this concept in computer science,optimization problems,and also in chemistry enormous research has been conducted.To extend this research to a four-dimensional structure,we studied the metric basis of the Klein bottle and proved that the Klein bottle has a constant metric dimension for the variation of all its parameters.Although the metric basis is variying in 3 and 4 values when the values of its parameter change,it remains constant and unchanged concerning its order or number of vertices.The methodology of determining the metric basis or locating set is based on the distances of a graph.Therefore,we proved the main theorems in distance forms.
文摘A non-orthogonal predefined exponential basis set is used to handle half-bounded domains in multi domain spectral method (MDSM). This approach works extremely well for real-valued semi-infinite differential problems. It spans simultaneously wide range of exponential decay rates with multi scaling and does not suffer from zero crossing. These two conditions are necessary for many physical problems. For comparison, the method is used to solve different problems and compared with analytical and published results. The comparison exhibits the strengths and accuracy of the presented basis set.
基金Project supported by the National Natural Science Foundation of China (Grant Nos.11274149 and 11374353)the Natural Science Foundation of Liaoning Province,China (Grant No.20121032)+2 种基金the Scientific Research Foundation for Doctors of Liaoning Universitythe Natural Science Foundation of Liaoning Universitythe Program of Shenyang Key Laboratory of Optoelectronic Materials and Technology,China (Grant No.F12-254-1-00)
文摘A scheme based on treating uniform singlet-pair and triplet-pair interactions is suggested to extrapolate electron correlation energy of ammonia, calculated at two basis-set levels of ab initio theory in the infinite one-electron basis-set limit. The dual-level method is tested on the extrapolation of the full correlation in coupled-cluster singles and doubles and in the case also a noniterative perturbative correction for connected triple energies for the C3v and D3h structures of ammonia, with correlation-consistent basis sets of the type cc-pVXZ (X = D, T, Q, 5, 6) and aug-cc-pVXZ (X = D, T, Q, 5). For testing and comparison purposes, the energies reported by Klopper [J. Comput. Chem. 22 1306 (2001)] have been taken. From a corresponding extrapolation of CCSD(T)/AVXZ energies for X = 4, 5, we obtain total inversion barriers of 1833.87 cm-1/1832.33 cm^-1 for the two/three-parameter extrapolation rules, which are in good agreement with other theoretical extrapolation and empirical values in the literature.
文摘Recent experimental evidence suggests again the existence of the metastable methane anion in plasma swarms. In order to test the reliability of the complete basis set (CBS) extrapolation scheme with augmented correlation-consistent basis sets for anionic molecules, we study the evolution of the electron affinity of methane with benchmark ab initio calculations with aug-cc basis sets up to aug-cc-pV6Z + diffuse. Geometry optimizations and vibrational analysis were done at the MP2 level. The electron affinity (EA) was calculated at the MP2 and CCSD(T) levels with and without frozen core and including the extrapolations to the CBS limit. Using the aug-cc-pVnZ basis sets it is found that two non-decreasing CCSD(T) CBS limits exist for the EA (0.29 and 0.53 eV) obtained with the n = 3, 4, 5 and n = 4, 5, 6 series, respectively. A new scheme is proposed which can be generalized for very accurate quantum chemical description of molecular anions: the standard aug-cc-pVnZ basis sets can be supplemented with extra-diffuse orbitals using a simple even-tempered scheme. This yields a reliable CBS extrapolation method to develop a (discrete approximation of a) continuum anionic state near ionization, viz., one that closely matches the energy of the corresponding neutral state. These results show that CH4 has no stable anions of 2A1 symmetry, implying that plasma swarms with anionic methane consist of metastable rather than stable methane anions.
文摘A DFT conformational and vibrational analysis of a single molecule of cisplatin (cis-[Pt(NH3)2Cl2]) was performed by means of PW91 functional and LANL08 ECP basis set for the Pt atom. 3-21G and 3-21G* Basis sets were used for the remaining atoms. All the initially chosen conformations were found to converge to the global minimum conformation of C2v symmetry with H atoms lying in the coordination plane and pointing to the Cl atoms. The computational results were compared with the newest experimental structural data and with the vibrational spectroscopic data for cisplatin, obtained by other workers. The chosen level of theory was found to describe satisfactory the molecular structure (r. m. s. of the relative deviations ≤ 6%) and the harmonic vibrational frequencies (r. m. s. of the relative deviations ≤ 5%) of cisplatin.
基金supported by the National Natural Science Foundation of China(No.21533003,No.21773081 and No.22073035)。
文摘Recently,more attention have been paid on the construction of dipole moment functions(DMF)using theoretical methods.However,the computational methods to construct DMFs are not validated as much as those for potential energy surfaces do.In this letter,using Ar…He as an example,we tested how spectroscopyaccuracy DMFs can be constructed using ab initio methods.We especially focused on the basis set dependency in this scenario,i.e.,the convergence of DMF with the sizes of basis sets,basis set superposition error,and mid-bond functions.We also tested the explicitly correlated method,which converges with smaller basis sets than the conventional methods do.This work can serve as a pictorial sample of all these computational technologies behaving in the context of constructing DMFs.
文摘Valence and all electron correlation energies of a large set of atoms and molecules with structural motifs from amino acids and peptides at their equilibrium as well as non-equilibrium geometries are calculated at the levels of MP2, RI-MP2, and CCSD (T) with Dunnings sequential correlation consistent basis sets. A two point basis set extrapolation scheme for correlation energies to the complete basis set limit based on only DZ (double-zeta) and TZ (triple-zeta) results is presented and analyzed. We show that this basis set extrapolation scheme reduces the computational cost by two to three orders of magnitude to obtain the same accuracy as simpler extrapolations from higher order basis set computations.
基金the National Natural Science Foundation of China (Grant No. 50128706).
文摘Rough set (RS) and radial basis function neural network (RBFNN) based insulation data mining fault diagnosis for power transformer is proposed. On the one hand rough set is used as front of RBFNN to simplify the input of RBFNN and mine the rules. The mined rules whose “confidence” and “support” is higher than requirement are used to offer fault diagnosis service for power transformer directly. On the other hand the mining samples corresponding to the mined rule, whose “confidence and support” is lower than requirement, are used to be training samples set of RBFNN and these samples are clustered by rough set. The center of each clustering set is used to be center of radial basis function, i.e., as the hidden layer neuron. The RBFNN is structured with above base, which is used to diagnose the case that can not be diagnosed by mined simplified valuable rules based on rough set. The advantages and effectiveness of this method are verified by testing.
文摘量子力学中的Roothaan-Hartree-Fock(R-H-F)近似计算在原子、分子和材料电子结构计算中具有重要的意义,是其他高精度电子结构计算方法的基础.本工作根据开源网站Basis Set Exchange中丰富的基组资源,利用高斯型基组矩阵元具有解析表达式的特性,自行编写Roothaan-Hartree-Fock计算程序,可以较为方便的达到高精度的计算结果.同时本工作用不同大小的基组计算了多种原子和离子的基态能量,研究了He、Be、C2+等原子和离子在不同基组下的收敛特性.此外,基于自行编写的R-H-F程序计算得到He、Be、Ne的第一电离能,与实验对比最大误差不超过6.84%.
基金supported by the National Key Research and Development Program of China(Grant No.2020YFA0211303)the National Natural Science Foundation of China(Grant No.91850207)the numerical calculations in this paper have been done on the supercomputing system in the Supercomputing Center of Wuhan University.
文摘In real space density functional theory calculations,the effective potential depends on the electron density,requiring self-consistent iterations,and numerous integrals at each step,making the process time-consuming.In our research,we propose an optimization method to expedite density functional theory(DFT)calculations for systems with large aspect ratios,such as metallic nanorods,nanowires,or scanning tunneling microscope tips.This method focuses on employing basis set to expand the electron density,Coulomb potential,and exchange-correlation potential.By precomputing integrals and caching redundant results,this expansion streamlines the integration process,significantly accelerating DFT computations.As a case study,we have applied this optimization to metallic nanorod systems of various radii and lengths,obtaining corresponding ground-state electron densities and potentials.
文摘For a perspective set that is derived by finite consequences with probabilities, this paper introduces the conception of basis that is proved and the uniqueness of basis over a perspective set holds. These give the characteristic properties of perspective sets and finite consequences with probabilities. These properties are applied to the utility defined by the consequences.
基金supported by the National Natural Science Foundation of China (Nos. 41074003 and 60975039)the Opening Foundation of the Key Laboratory of Intelligent Information Processing of Chinese Academy of Sciences (No. IIP2010-1)the Youth Science Foundation of China University of Mining and Technology (Nos. 2008A045 and 2009A053)
文摘A novel method based on rough sets (RS) and the affinity propagation (AP) clustering algorithm is developed to optimize a radial basis function neural network (RBFNN). First, attribute reduction (AR) based on RS theory, as a preprocessor of RBFNN, is presented to eliminate noise and redundant attributes of datasets while determining the number of neurons in the input layer of RBFNN. Second, an AP clustering algorithm is proposed to search for the centers and their widths without a priori knowledge about the number of clusters. These parameters are transferred to the RBF units of RBFNN as the centers and widths of the RBF function. Then the weights connecting the hidden layer and output layer are evaluated and adjusted using the least square method (LSM) according to the output of the RBF units and desired output. Experimental results show that the proposed method has a more powerful generalization capability than conventional methods for an RBFNN.