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Analysis of the autophagy gene expression profile of pancreatic cancer based on autophagy-related protein microtubule-associated protein 1A/1B-light chain 3 被引量:15
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作者 Yan-Hui Yang Yu-Xiang Zhang +3 位作者 Yang Gui Jiang-Bo Liu Jun-Jun Sun Hua Fan 《World Journal of Gastroenterology》 SCIE CAS 2019年第17期2086-2098,共13页
BACKGROUND Pancreatic cancer is a highly invasive malignant tumor. Expression levels of the autophagy-related protein microtubule-associated protein 1 A/1 B-light chain 3(LC3) and perineural invasion(PNI) are closely ... BACKGROUND Pancreatic cancer is a highly invasive malignant tumor. Expression levels of the autophagy-related protein microtubule-associated protein 1 A/1 B-light chain 3(LC3) and perineural invasion(PNI) are closely related to its occurrence and development. Our previous results showed that the high expression of LC3 was positively correlated with PNI in the patients with pancreatic cancer. In this study, we further searched for differential genes involved in autophagy of pancreatic cancer by gene expression profiling and analyzed their biological functions in pancreatic cancer, which provides a theoretical basis for elucidating the pathophysiological mechanism of autophagy in pancreatic cancer and PNI.AIM To identify differentially expressed genes involved in pancreatic cancer autophagy and explore the pathogenesis at the molecular level.METHODS Two sets of gene expression profiles of pancreatic cancer/normal tissue(GSE16515 and GSE15471) were collected from the Gene Expression Omnibus.Significance analysis of microarrays algorithm was used to screen differentially expressed genes related to pancreatic cancer. Gene Ontology(GO) analysis and Kyoto Encyclopedia of Genes and Genomes(KEGG) pathway analysis were used to analyze the functional enrichment of the differentially expressed genes. Protein interaction data containing only differentially expressed genes was downloaded from String database and screened. Module mining was carried out by Cytoscape software and ClusterOne plug-in. The interaction relationship between the modules was analyzed and the pivot nodes between the functional modules were determined according to the information of the functional modules and the data of reliable protein interaction network.RESULTS Based on the above two data sets of pancreatic tissue total gene expression, 6098 and 12928 differentially expressed genes were obtained by analysis of genes with higher phenotypic correlation. After extracting the intersection of the two differential gene sets, 4870 genes were determined. GO analysis showed that 14 significant functional items including negative regulation of protein ubiquitination were closely related to autophagy. A total of 986 differentially expressed genes were enriched in these functional items. After eliminating the autophagy related genes of human cancer cells which had been defined, 347 differentially expressed genes were obtained. KEGG pathway analysis showed that the pathways hsa04144 and hsa04020 were related to autophagy. In addition,65 clustering modules were screened after the protein interaction network was constructed based on String database, and module 32 contains the LC3 gene,which interacts with multiple autophagy-related genes. Moreover, ubiquitin C acts as a pivot node in functional modules to connect multiple modules related to pancreatic cancer and autophagy.CONCLUSION Three hundred and forty-seven genes associated with autophagy in human pancreatic cancer were concentrated, and a key gene ubiquitin C which is closely related to the occurrence of PNI was determined, suggesting that LC3 may influence the PNI and prognosis of pancreatic cancer through ubiquitin C. 展开更多
关键词 Pancreatic cancer autophagy-related PROTEIN microtubule-associated PROTEIN 1A/1B-light chain 3 Perineural invasion gene Ontology ANALYSIS Kyoto ENCYCLOPEDIA of genes and Genomes pathway ANALYSIS Ubiquitin C
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Evaluation of autophagy-related genes and lncRNAs signature for prognositic prediction in thyroid carcinoma via bioinformatics analysis
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作者 Shan-Qi Guo Ying-lie lia +1 位作者 Deng Hao xiao-jiang Li 《TMR Clinical Research》 2021年第2期25-41,共17页
Autophagy plays a significant role in the pathogenesis and prognosis of thyroid carcinoma.The role of autophagy-related genes and long non-coding RNAs,as well as the risk model of thyroid carcinoma patients were inves... Autophagy plays a significant role in the pathogenesis and prognosis of thyroid carcinoma.The role of autophagy-related genes and long non-coding RNAs,as well as the risk model of thyroid carcinoma patients were investigated to predict clinical outcome of thyroid carcinoma.Different expression of autophagy-related genes and long non-coding RNAs in thyroid carcinoma patients was identified in The Cancer Genome Atlas database.Functional enrichment analysis and gene set enrichment analysis was used to hint the mechanism that autophagy might act in thyroid carcinoma.Univariate and multivariate Cox regression analyses were performed for screening the prognostic autophagy-related genes and long non-coding RNAs to construct prognostic related risk model.thyroid carcinoma patients were divided into the low-risk and high-risk groups.The overall survival time was both shorter in the high-risk groups than that in the low-risk groups.As for autophagy-related genes prognostic risk model,age and autophagy-related genes risk score are independent prognostic factors that affect the survival of thyroid carcinoma.ATIC and CDKN2A expression was closely related to pathological stage and T status,DNAJB1 expression was closely related to M status,age and gender.While autophagy-associated long non-coding RNA related prognostic risk model consequently demonstrated that the long non-coding RNA risk score could significantly predict the survival rate of thyroid carcinoma patients with areas under the curve of 0.972.gene set enrichment analysis presented that a total of 16 gene sets including 10 up-regulated and 6 down-regulated gene sets were significantly enriched.The autophagy-related genes and long non-coding RNAs based prognostic risk models are a reliable forecasting tool for thyroid carcinoma patients. 展开更多
关键词 autophagy-related gene Long non-coding RNA PROGNOSIS Thyroid carcinoma The Cancer Genome Atlas
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Identification of SNPs in Bovine SLC27A1 Gene and Its Effects on Milk Production Traits in Chinese Holstein Cattle 被引量:1
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作者 吕延飞 魏彩虹 +7 位作者 张莉 路国彬 刘开东 陆健 孙丹 张世芳 柳楠 杜立新 《Agricultural Science & Technology》 CAS 2010年第6期106-111,共6页
[Objective] This study discussed the SNPs of SLC27A1 gene and its relationship with milk production traits in Chinese Holstein Cattle in order to find the SNP site which had significant effect on milk production trait... [Objective] This study discussed the SNPs of SLC27A1 gene and its relationship with milk production traits in Chinese Holstein Cattle in order to find the SNP site which had significant effect on milk production traits in Chinese Holstein Cattle.[Method] DNA was extracted from the bleed of 48 Chinese Holstein Cattle selected according to phenotypic character and mixed into DNA pool for SNPs detection by polymerase chain reaction-single strand conformation polymorphism(PCR-SSCP)and cloning sequencing.Then different genotypes were detected in other 231 Chinese Holstein Cattle by PCR-RFLP.The association between genotype and production traits was assessed by GLM procedure,SAS version 8.02.[Result] There were T112C in exon3 and G64A loci in 3'UTR,among them the T112C in exon3 was synonymous mutation.There were 3 genotypes TT,TC and CC in T112C locus and 3 genotypes GG,GA and AA in G64A locus.The population was at Hardy-Weinberg equilibration.Cows with genotype CC had significantly highest milk yield than those with genotype TC(P0.01),and there were no significant differences among the 3 genotypes on milk protein percent and milk fat percent(P0.05),but the tendency of CC TC TT on milk protein percent and the tendency of TT TC CC on milk fat percent were showed.There was no significant difference among the 3 genotypes of G64A loci on milk yield,milk protein percent and milk fat percent(P0.05),but the tendency of GA GG AA on milk yield and the tendency of AA GG GA both on milk protein percent and milk fat percent were showed.[Conclusion] There was certain relation between the T112C locus and milk yield traits;It may improve milk yield to raise the frequency of genotype CC;SLC27A1 gene could be a useful candidate gene in selection program on milk yield traits in Chinese Holstein Cattle,which provided a theoretical basis for the marker-assisted breeding and further study of SLC27A1 gene. 展开更多
关键词 SLC27A1 gene SNPS PCR-SSCP PCR-RFLP Milk production traits
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Genetic Analysis of Embryo Production Frequency in Wheat × Maize Cross
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作者 刘琨 宁波 +4 位作者 李宏生 李绍祥 顾坚 赵红 杨木军 《Agricultural Science & Technology》 CAS 2015年第9期1869-1872,共4页
A DH population derived from C49S-87/01Y1-1069 was used to study the inheritance of wheat haploid embryo production frequency(EPF) in wheat × maize cross with the mixed major gene and polygene inheritance model... A DH population derived from C49S-87/01Y1-1069 was used to study the inheritance of wheat haploid embryo production frequency(EPF) in wheat × maize cross with the mixed major gene and polygene inheritance model of quantitative traits. The results showed that the EPF of wheat × maize cross was controlled by two dominant epistatic genes and polygene with gene effects of 1.95 for the first major gene, 6.69 for the second one and 2.80 for the polygene. The inheritability of major genes was as high as 72.09%, suggesting that the differences in EPF among wheat materials were mainly influenced by genotype. However, non-genetic factors were still important, especially for wheat materials with low EPF. 展开更多
关键词 Wheat × maize cross Haploid embryo production frequency Double Haploid population Mixed major gene and polygene inheritance model
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Association of polymorphisms of Nramp1 gene with immune function and production performance of large white pig 被引量:12
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作者 Hongmei Wu Duxue Cheng Lixian Wang 《Journal of Genetics and Genomics》 SCIE CAS CSCD 北大核心 2008年第2期91-95,共5页
The present research was designed to study the association of polymorphism of natural resistance-associated macrophage proteinl (Nrampl) with some immune function and the production performance in Large White pig. T... The present research was designed to study the association of polymorphism of natural resistance-associated macrophage proteinl (Nrampl) with some immune function and the production performance in Large White pig. The PCR-RFLP technique was applied to analyze the correlation between the polymorphisms of Nrampl gene and immune function [value of Polymorphonuclear Leukocytes (PMN) obtained by Nitroblue Tetrazolium (NBT) Reduction and effect of Cytotoxin in Monocyte] and production performance in 165 Large White pigs. The results showed that there was one Nde I restriction locus in Large White pig, and both values of PMN by NBT Reduction and effect of Cytotoxin in Monocyte in genotype BB were higher than those in genotype AB (P〈0.05). Simultaneously, the weight of 180-day-old pigs with genotype BB was higher than that with genotype AB (P〈0.05). The results indicated that there was a significant correlation between different genotypes of Nrampl gene and Immune function and production performance, and it can be regarded as a candidate gene of disease resistance. All these results provide valuable reference to further studies of pig disease resistance. 展开更多
关键词 Large White pig Nrampl gene immune function production performance
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Form Gene Clustering Method about Pan-Ethnic-Group Products Based on Emotional Semantic 被引量:6
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作者 CHEN Dengkai DING Jingjing +2 位作者 GAO Minzhuo MA Danping LIU Donghui 《Chinese Journal of Mechanical Engineering》 SCIE EI CAS CSCD 2016年第6期1134-1144,共11页
The use of pan-ethnic-group products form knowledge primarily depends on a designer's subjective experience without user participation. The majority of studies primarily focus on the detection of the perceptual deman... The use of pan-ethnic-group products form knowledge primarily depends on a designer's subjective experience without user participation. The majority of studies primarily focus on the detection of the perceptual demands of consumers from the target product category. A pan-ethnic-group products form gene clustering method based on emotional semantic is constructed. Consumers' perceptual images of the pan-ethnic-group products are obtained by means of product form gene extraction and coding and computer aided product form clustering technology. A case of form gene clustering about the typical pan-ethnic-group products is investigated which indicates that the method is feasible. This paper opens up a new direction for the future development of product form design which improves the agility of product design process in the era of Industry 4.0. 展开更多
关键词 emotional semantic pan-ethnic-group products gene extract gene coding form gene clustering
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Gene expression profiling defined pathways correlated with fibroblast cell proliferation induced by Opisthorchis viverrini excretory /secretory product 被引量:5
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作者 Chanitra Thuwajit Peti Thuwajit +4 位作者 Kazuhiko Uchida Daoyot Daorueang Sasithorn Kaewkes Sopit Wongkham Masanao Miwa 《World Journal of Gastroenterology》 SCIE CAS CSCD 2006年第22期3585-3592,共8页
AIM: To investigate the mechanism of fibroblast cell proliferation stimulated by the Opisthorchis viverrini excretory/secretory (ES) product. METHODS: NIH-3T3, mouse fibroblast cells were treated with O. viverrini... AIM: To investigate the mechanism of fibroblast cell proliferation stimulated by the Opisthorchis viverrini excretory/secretory (ES) product. METHODS: NIH-3T3, mouse fibroblast cells were treated with O. viverrini ES product by non-contact co-cultured with the adult parasites. Total RNA from NIH-3T3 treated and untreated with O. viverrini was extracted, reverse transcribed and hybridized with the mouse 15K complementary DNA (cDNA) array. The result was analyzed by ArrayVision version 5 and GeneSpring version 5 softwares. After normalization, the ratios of gene expression of parasite treated to untreated NIH-3T3 cells of 2-and more-fold upregulated was defined as the differentially expressed genes. The expression levels of the signal transduction genes were validated by semiquantitative SYBR-based real-time RT-PCR. RESULTS: Among a total of 15 000 genes/ESTs, 239 genes with established cell proliferation-related function were 2 fold-and more-up-regulated by O. viverrini ES product compared to those in cells without exposure to the parasitic product. These genes were classified into groups including energy and metabolism, signal transduction, protein synthesis and translation, matrix and structural protein, transcription control, cell cycle and DNA replication. Moreover, the expressions of serinethreonine kinase receptor, receptor tyrosine kinase and collagen production-related genes were up-regulated by O.viverrini ES product, The expression level of signal transduction genes, pkC, pdgfra, jak 1, eps 8, tgfβ 1/4,strap and h ras measured by real-time RT-PCR confirmed their expression levels to those obtained from cDNA array. However, only the up-regulated expression of pkC,eps 8 and tgfβ3 1/4 which are the downstream signaling molecules of either epidermal growth factor (EGF) or transforming growth factor-β (TGF-β) showed statistical significance (P 〈 0.05).CONCLUSION: O. viverrini ES product stimulates the significant changes of gene expression in several functional categories and these mainly include transcripts related to cell proliferation. The TGF-β and EGF signal transduction pathways are indicated as the possible pathways of O. viverrini-driven cell proliferation. 展开更多
关键词 gene expression profile Opisthorchis viverrini Excretory/secretory product cDNA array FIBROBLAST Cell proliferation Signal transduction Cholangiocarcinogenesis
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Engineering of Corynebacterium glutamicum to Enhance L-ornithine Production by Gene Knockout and Comparative Proteomic Analysis 被引量:3
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作者 卢冬梅 刘建忠 毛宗万 《Chinese Journal of Chemical Engineering》 SCIE EI CAS CSCD 2012年第4期731-739,共9页
Engineered Corynebacterium glutamicum was constructed for L-ornithine production by disrupting genes of argF and proB to prevent the flux away from L-ornithine.Effect of the inactivation of 2-oxoglutarate de-hydrogena... Engineered Corynebacterium glutamicum was constructed for L-ornithine production by disrupting genes of argF and proB to prevent the flux away from L-ornithine.Effect of the inactivation of 2-oxoglutarate de-hydrogenase complex(ODHC) on L-ornithine production was also investigated.It was found that the inactivation of ODHC by knockout of the kgd gene enhanced L-ornithine production.The engineered C.glutamicum ATCC13032(ΔargFΔproBΔkgd) produced L-ornithine up to 4.78 g·L-1 from 0.24 g·L-1 of the wild-type strain.In order to understand the mechanism of L-ornithine production in C.glutamicum ATCC13032(ΔargFΔproBΔkgd) and find out new strategies for further enhancing L-ornithine production,the comparative proteome between the wild-type and the engineered strain was analyzed.L-Ornithine overproduction in the engineered strain was related to the up-regulation of the expression levels of enzymes involved in L-ornithine biosynthesis pathway and down-regulation of the expression levels of proteins involved in pentose phosphate pathway.The overexpression of genes in the upstream pathway of glutamate to increase the availability of endogenous glutamate may further in-crease ornithine production in the engineered C.glutamicum and the ornithine synthesis enzymes(ArgCJBD) may not be the limiting enzymes in the engineered C.glutamicum. 展开更多
关键词 L-ornithine production gene knockout 2-oxoglutarate dehydrogenase Corynebacterium glutamicum proteomic analysis
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Association of vascular endothelial growth factor-634G/C and receptor for advanced glycation end products G82S gene polymorphisms with diabetic retinopathy 被引量:2
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作者 Asmaa Kamal Khaled Abu Eleinen Ibrahem Siam 《International Journal of Ophthalmology(English edition)》 SCIE CAS 2016年第8期1106-1111,共6页
AIMTo investigate the association of receptor for advanced glycation end products (RAGE) G82S and vascular endothelial growth factor (VEGF) -634 G/C gene polymorphisms with diabetic retinopathy (DR).METHODSOur cross-s... AIMTo investigate the association of receptor for advanced glycation end products (RAGE) G82S and vascular endothelial growth factor (VEGF) -634 G/C gene polymorphisms with diabetic retinopathy (DR).METHODSOur cross-sectional study included 61 diabetic patients, 12 of them had proliferative diabetic retinopathy (PDR), 15 had non proliferative diabetic retinopathy (NPDR), 34 had no diabetic retinopathy (NDR) and 61 healthy controls. Participants were tested for RAGE G82S and VEGF -634 G/C polymorphisms by polymerase chain reaction-restriction fragment length polymorphism.RESULTSWe found a significant association between VEGF -634 G/C polymorphism and PDR as PDR patients had increased incidence of VEGF -634 CC genotype compared to NDR patients [odds ratio for CC vs (GC+GG)=6.5, 95% CI=1.5-27.8, P=0.021]. Also VEGF -634 CC genotype and C allele were significantly higher in the PDR than in NPDR patients, which is a novel finding in our study (P=0.024, 0.009 respectively). The mean triglycerides level was significantly higher in diabetic patients with CC genotype (P=0.01) as compared to patients with other genotypes. All cases and control subjects were of the same heterozygous RAGE 82G/S genotype.CONCLUSIONPatients carrying VEGF -634 C polymorphism have a higher risk of PDR development, so VEGF -634 G/C polymorphism could be used as a predictive marker for PDR in diabetic patients. We could not find a significant association between RAGE G82S polymorphism and DR. 展开更多
关键词 diabetic retinopathy vascular endothelial growth factor receptor for advanced glycation end products gene polymorphism
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Genetic and epigenetic targets of natural dietary compounds as anti-Alzheimer's agents 被引量:2
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作者 Willian Orlando Castillo-Ordoñez Nohelia Cajas-Salazar Mayra Alejandra Velasco-Reyes 《Neural Regeneration Research》 SCIE CAS CSCD 2024年第4期846-854,共9页
Alzheimer’s disease is a progressive neurodegenerative disorder and the most common cause of dementia that principally affects older adults.Pathogenic factors,such as oxidative stress,an increase in acetylcholinester... Alzheimer’s disease is a progressive neurodegenerative disorder and the most common cause of dementia that principally affects older adults.Pathogenic factors,such as oxidative stress,an increase in acetylcholinesterase activity,mitochondrial dysfunction,genotoxicity,and neuroinflammation are present in this syndrome,which leads to neurodegeneration.Neurodegenerative pathologies such as Alzheimer’s disease are considered late-onset diseases caused by the complex combination of genetic,epigenetic,and environmental factors.There are two main types of Alzheimer’s disease,known as familial Alzheimer’s disease(onset<65 years)and late-onset or sporadic Alzheimer’s disease(onset≥65 years).Patients with familial Alzheimer’s disease inherit the disease due to rare mutations on the amyloid precursor protein(APP),presenilin 1 and 2(PSEN1 and PSEN2)genes in an autosomaldominantly fashion with closely 100%penetrance.In contrast,a different picture seems to emerge for sporadic Alzheimer’s disease,which exhibits numerous non-Mendelian anomalies suggesting an epigenetic component in its etiology.Importantly,the fundamental pathophysiological mechanisms driving Alzheimer’s disease are interfaced with epigenetic dysregulation.However,the dynamic nature of epigenetics seems to open up new avenues and hope in regenerative neurogenesis to improve brain repair in Alzheimer’s disease or following injury or stroke in humans.In recent years,there has been an increase in interest in using natural products for the treatment of neurodegenerative illnesses such as Alzheimer’s disease.Through epigenetic mechanisms,such as DNA methylation,non-coding RNAs,histone modification,and chromatin conformation regulation,natural compounds appear to exert neuroprotective effects.While we do not purport to cover every in this work,we do attempt to illustrate how various phytochemical compounds regulate the epigenetic effects of a few Alzheimer’s disease-related genes. 展开更多
关键词 Alzheimer’s disease EPIgeneTICS genes METHYLATION natural products
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Correlation between DRD2 Gene Polymorphism and Early Egg Production Performance of Libo Yaoshan Chicken
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作者 Zhu Lili Li Dongguang +2 位作者 Xu Longxin Han Xue Wu Gemin 《Animal Husbandry and Feed Science》 CAS 2015年第4期208-211,共4页
To improve egg production performance of local chicken breed in Guizhou Province, Libo Yaoshan chicken, with dopamine receptor 2 ( DRD2 ) as one of the candidate genes, we detected its genetic variation in 196 Libe ... To improve egg production performance of local chicken breed in Guizhou Province, Libo Yaoshan chicken, with dopamine receptor 2 ( DRD2 ) as one of the candidate genes, we detected its genetic variation in 196 Libe Yaoshan hens using PCR-SSCP (single-strand conformation polymorphism) and sequencing method, and analyzed the correlation between genetic variation and egg production traits. The results showed that TT and TG genotypes in mRNA SNlX)62 (C→T) loci of the DRD2 gene had extremely significant difference in egg production at 38 weeks age (P 〈0.01 ), and significant difference in egg weight at 300 days age (P 〈0.05 ). The single nucleotide polymorphisms (SNPs) mutation induced synonymous mutation of the 312th amino acids (leucine) in DRD2 protein, from L (CTG) to L (TI'G). The mRNA SNP962 (C→T) loci had a larger genetic effect on egg production at 38 weeks age, and could be used as a molecular marker in early breeding of Libo Yaoshan chicken. 展开更多
关键词 Dopamine receptor 2 (DRD2) gene gene polymorphism Libo Yaoshan chicken Early egg production performance PCR-SSCP
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Production Systems, Genetic Diversity and Genes Associated with Prolificacy and Milk Production in Indigenous Goats of Sub-Saharan Africa: A Review
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作者 Simon Patrick Baenyi Joseph Owino Junga +4 位作者 Christian Keambou Tiambo Ahadi Bwihangane Birindwa Katcho Karume Getinet Mekuriaw Tarekegn Joel Winyo Ochieng 《Open Journal of Animal Sciences》 2020年第4期735-749,共15页
Goats are one of the oldest domesticated animal species widely distributed in the world playing an important role in the food production system in Sub-Saharan African Region (SSAR). Due to their multiple uses (milk pr... Goats are one of the oldest domesticated animal species widely distributed in the world playing an important role in the food production system in Sub-Saharan African Region (SSAR). Due to their multiple uses (milk production, meat, fiber and hides) and adaptation aptitudes to ecological conditions, goats produce and contribute positively to farmers’ socio-economy status in various production systems. This review aimed at giving a summary overview on the goat’s production systems characteristics, the genetic diversity and the candidate genes affecting reproductive and milk production performances in goat breeds in SSAR. It has been observed that traditional livestock production system with communal grazing system is the most used in goat keeping in SSAR. The geographical locations play an important role in the relationships between goat’s distributions in the region. At the same time, goats might have been differentiated and isolated one to others due to the wide geographic range, the diversify climate and the topography in the region. Among the six worldwide known haplogroups of goat (A, B, C, D, G and F), haplogroup A is the most representative in SSAR. However, haplogroup G and B can be found in some goat populations in some countries in east (Kenya and Ethiopia) and south parts of Africa. This review reveals that little is known on the candidate genes associated with prolificacy and milk production traits in indigenous goat breeds in the region. That observation suggests the importance of assessing candidate genes associated with economic traits in the populations of goat in SSAR. 展开更多
关键词 gene PROLIFICACY Milk production Sub-Saharan African Region
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Product of the Schistosoma mansoni Glutathione Peroxidase Gene is a Selenium ContainingPhospholipid Hydroperoxide Glutathione Peroxidase (PHGPx) Sharing MolecularWeight and Substrate Specificity WithIts Mammalian Counterpart
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作者 MATILDE MAIORINO RAYMOND PIERCE +2 位作者 AND LEOPOLD FLOHE (Dipartimento di Chimica Biologica, Universitd di Padova, Padova, Italy Reltion hote-parasite stratigies vaccinales, INSERM U167, Institut Pasteur, Lille Cedex, France Department of Physiological Chemistr 《Biomedical and Environmental Sciences》 SCIE CAS CSCD 1997年第2期209-213,共5页
In the blood fluke Schistosoma mansoni a functionally active, monomeric, phospholipid hydroperoxide glutathione peroxidase (PHGPx) has been purified and characterized. This enzyme contains a catalytically active selen... In the blood fluke Schistosoma mansoni a functionally active, monomeric, phospholipid hydroperoxide glutathione peroxidase (PHGPx) has been purified and characterized. This enzyme contains a catalytically active selenocysteine. The protein has been shown to be the product of a cloned gene, previously referred to as a glutathione peroxidase gene. S. mansoni PHGPx has been found 5 times more abundant in female than in male worm extract. As in vertebrate PHGPx, homology alignment indicates that the residues involved in the glutathione binding by the tetrameric cellular glutathione peroxidase are mutated in the S. mansoni enzyme. Thus, this aspect appears a landmark of the PHGPx-type of glutathione peroxidases,which might be of functional relevance 展开更多
关键词 Sharing MolecularWeight and Substrate Specificity WithIts Mammalian Counterpart gene product of the Schistosoma mansoni Glutathione Peroxidase gene is a Selenium ContainingPhospholipid Hydroperoxide Glutathione Peroxidase PHGPX
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基于转录组和蛋白质组分析筛选五龙鹅产蛋相关候选基因
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作者 鲁秀 张名爱 +7 位作者 孔敏 张晶 王秉翰 侯中一 滕兴怡 姜雅静 凡文磊 王宝维 《畜牧兽医学报》 北大核心 2025年第1期232-245,共14页
旨在通过转录组和蛋白组联合分析来挖掘五龙鹅产蛋量相关候选基因,为其产蛋性能遗传机制研究提供理论基础。本研究选取200只体重相近的36周龄健康五龙鹅种鹅,记录其36~54周龄产蛋情况。在产蛋后期(54周龄)时,根据产蛋水平,将产蛋量最高... 旨在通过转录组和蛋白组联合分析来挖掘五龙鹅产蛋量相关候选基因,为其产蛋性能遗传机制研究提供理论基础。本研究选取200只体重相近的36周龄健康五龙鹅种鹅,记录其36~54周龄产蛋情况。在产蛋后期(54周龄)时,根据产蛋水平,将产蛋量最高的30只鹅定为高产组,产蛋量最低的30只鹅定为低产组,从高产组(H)和低产组(L)鹅中各采集3个卵巢组织,提取RNA和蛋白质,通过转录组测序(RNA-Seq)和4D-DIA蛋白组定量分析筛选差异表达基因(differentially expressed genes, DEGs)和差异表达蛋白(differentially expressed proteins, DEPs)。之后对筛选的差异基因和蛋白进行RT-qPCR验证、功能富集分析和蛋白互作(PPI)网络的构建与分析,筛选鹅产蛋性能相关的候选基因。结果:共鉴定到450个DEGs和333个DEPs,其中,AFAP1、INHA、FNDC1、INHBB在基因和蛋白水平上表达出相同的差异趋势。富集分析显示,DEGs和DEPs显著富集到364个GO条目和75个KEGG通路,涉及生殖结构发育(gland development)、性别分化(sex differentiation)、性激素活性(hormone activity)、TGF-β通路(TGF-β signaling pathway)、卵母细胞减数分裂(oocyte meiosis)、GnRH信号通路(GnRH signaling pathway)、孕激素介导的卵母细胞成熟(progesterone-mediated oocyte maturation)等多个与产蛋相关的通路和关键生物过程。选取9个潜在候选基因,对高产组和低产组(包含转录组测序样品)各8个卵巢组织进行RT-qPCR验证,表达趋势与测序结果一致。基于上述研究结果,本研究最终筛选到6个与五龙鹅产蛋性能密切相关的候选基因(PTTG1、LRP2、TNFSF10、INHA、INHBB、FST),丰富了五龙鹅产蛋性能的相关分子机制。 展开更多
关键词 五龙鹅 转录组 蛋白组 产蛋量 候选基因
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Research Progress on Mechanized Mixed Sowing Seed Production Technology of Hybrid Rice 被引量:4
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作者 张德文 《Agricultural Science & Technology》 CAS 2017年第5期924-929,939,共7页
Hybrid rice planting has been widely popularized and applied in the world. However, the high cost of seed production and the complicated procedures have become a bottleneck in the development of hybrid rice. The resea... Hybrid rice planting has been widely popularized and applied in the world. However, the high cost of seed production and the complicated procedures have become a bottleneck in the development of hybrid rice. The research progress on mixed sowing seed production techniques of hybrid rice was introduced from the aspects of rice resources creation, breeding, sowing seed technology research and cost benefit analysis. The production technology of the new mixed seeding combina- tion "Xinhunyou 6" was investigated, including the research and validation of benta- zon treatment period and dosage, mixing ratio of male and female parents, and the comparative test of different different sowing methods, which revealed that the mechanization technology of seed production of hybrid rice was mature and feasible and would be one of the most important development trend of technological devel- opment of hybrid rice production. 展开更多
关键词 Hybrid rice Mechanized seed production Glume color marker gene BENTAZON Research progress
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乡村文化基因转译下的农产品生态包装设计研究
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作者 任欣瑜 甘燚 朱天阳 《工业设计》 2025年第1期44-47,共4页
针对部分农产品包装形式不科学、不环保、无法匹配农产品发展水平的问题,文章提出一种乡村文化基因转译下的农产品生态包装设计研究方法。文章以农产品的生态包装设计为研究对象,探究乡村文化元素形象在农产品包装设计中的应用模式。基... 针对部分农产品包装形式不科学、不环保、无法匹配农产品发展水平的问题,文章提出一种乡村文化基因转译下的农产品生态包装设计研究方法。文章以农产品的生态包装设计为研究对象,探究乡村文化元素形象在农产品包装设计中的应用模式。基于基因转译方法探究乡村文化元素的提取方法和使用方式,探讨农产品采用生态包装设计的策略,从中探索设计流程与方法,并从文化内涵、形式外观、使用材料等层面提出包装设计的创新发展策略。 展开更多
关键词 乡村文化 基因转译 农产品 生态 包装设计
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Autophagy and neurodegenerative disorders 被引量:15
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作者 Evangelia Kesidou Roza Lagoudaki +2 位作者 Olga Touloumi Kyriaki-Nefeli Poulatsidou Constantina Simeonidou 《Neural Regeneration Research》 SCIE CAS CSCD 2013年第24期2275-2283,共9页
Accumulation of aberrant proteins and inclusion bodies are hallmarks in most neurodegenerative diseases. Consequently, these aggregates within neurons lead to toxic effects, overproduction of reactive oxygen species a... Accumulation of aberrant proteins and inclusion bodies are hallmarks in most neurodegenerative diseases. Consequently, these aggregates within neurons lead to toxic effects, overproduction of reactive oxygen species and oxidative stress. Autophagy is a significant intracellular mechanism that removes damaged organelles and misfolded proteins in order to maintain cell homeostasis. Excessive or insufficient autophagic activity in neurons leads to altered homeostasis and influences their survival rate, causing neurodegeneration. The review article provides an update of the role of autophagic process in representative chronic and acute neurodegenerative disorders. 展开更多
关键词 neural regeneration REVIEWS oxidative stress AUTOPHAGY autophagy-related genes apoptosis Parkinson's disease amyotrophic lateral sclerosis multiple sclerosis acute and chronic neurode-generation NEUROREgeneRATION
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The expression of c-src gene in the carcinogenesis process of human cardia adenocarcinoma 被引量:2
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作者 WANG Xiu Jie, YUAN Shu Lan, XIAO Lin, WANG Xu Hua and WANG Chao Jun 《World Journal of Gastroenterology》 SCIE CAS CSCD 1999年第6期488-491,共4页
AIM To investigate the activation, expression of c src gene and its role in the carcinogenetic process of human cardia adenocarcinoma (CA). METHODS Fifty six cases of CA, 34 cases of normal, 36 cases of protiferative ... AIM To investigate the activation, expression of c src gene and its role in the carcinogenetic process of human cardia adenocarcinoma (CA). METHODS Fifty six cases of CA, 34 cases of normal, 36 cases of protiferative epithelia adjacent to carcinoma, and 20 cases of lymph node metastases of CA were studied for PP60 c src , the expression product of c src gene immunohistochemically by using the specific monoclonal antibody, Mab327. RESULTS The positive rates of PP60 c src in the normal epithelia, protiferative epithelia, CA and lymph node metastases were 29 4% (10/*!34), 94 4% (34/*!36), 71 4% (40/*!56) and 60 0% (12/*!20) , respectively, among them, the differences of the positive rates were statistically significant ( P <0 01) . The expression levels of PP60 c src in CA and proliferative epithelia were significantly higher than that in the normal epithelia ( P <0 01) . The PP60 c src positive rates in the papillary, tubular, poorly differentiated and mucous adenocarcinoma were 75 0% (6/*!8) , 81 8% (18/*!22) , 50 0% (10/*!20) and 100 0% (6/*!6) , respectively, whereas those of tubular and mucous adenocarcinomas were significantly higher than those of papillary and poorly differentiated adenocarcinomas ( P <0 05) , and the PP60 c src expression levels of tubular and mucous adenocarcinomas were also significantly higher than those of papillary and poorly differentiated adenocarcinomas ( P <0 01) . CONCLUSION The activation and expression of c src gene are associated with the initiation and development of human CA; the protein amount of PP60 c src increased during the process of carcinogenesis; and PP60 c src expression is also related to lymph node metastases. 展开更多
关键词 c SRC gene EXPRESSION product PP60 c SRC CARDIA ADENOCARCINOMA carcinogenesis neoplasm metastasis immunohistochemistry
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Cloning and characterization of geranylgeranyl diphosphate synthetase from Pinus massoniana and its correlation with resin productivity 被引量:1
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作者 Bowen Chen Yufei Xiao +6 位作者 Junji Li Hailong Liu Hu Chen Jie Jia Nan Chao Ying Gai Xiangning Jiang 《Journal of Forestry Research》 SCIE CAS CSCD 2018年第2期310-319,共10页
Geranylgeranyl pyrophosphate synthetase(GGPPS) has gained increasing attention as a key enzyme in terpene analysis.We designed specific primers based on plant GGPPS homologs and used reverse transcription polymerase c... Geranylgeranyl pyrophosphate synthetase(GGPPS) has gained increasing attention as a key enzyme in terpene analysis.We designed specific primers based on plant GGPPS homologs and used reverse transcription polymerase chain reaction(RT-PCR) to obtain and identify Pin GGPPS,a GGPPS gene sequence from Pinus massoniana,using bioinformatics tools.Quantitative PCR analysis of Pin GGPPS expression levels in roots,pine needles,immature stems,and semilignified stems from 6-month-old P.massoniana showed that expression levels of Pin GGPPS were highest in pine needles,followed by immature stems and semilignified stems,and lowest in roots.When we examined the correlation between Pin GGPPS gene expression levels and resin productivity in 20 adult plants for 28 successive days,Pin GGPPS expression levels presented a substantially linear distribution when plotted against their corresponding resin yields.In summary,we characterized the gene Pin GGPPS for the first time in P.massoniana,and established a correlation between Pin GGPPS gene expression levels and resin productivity,suggesting the importance of theory and production practice for P.massoniana. 展开更多
关键词 gene expression level GGPPS PinGGPPS Pinus massoniana Resin productivity
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P53 Gene Mutation and Expression of MDM2, P53,P16 Protein and their Relationship in Human Glioma 被引量:1
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作者 崔文 吴仁亮 +3 位作者 曹慧玲 高继发 王旭 任启伟 《Journal of Huazhong University of Science and Technology(Medical Sciences)》 SCIE CAS 2005年第6期622-624,635,共4页
To investigate the effect of P53 protein accumulation and p53 gene mutation in the pathogenesis of glioma and to study the role of MDM2, P53 and P16 protein in glioma formation and progression and their relationship w... To investigate the effect of P53 protein accumulation and p53 gene mutation in the pathogenesis of glioma and to study the role of MDM2, P53 and P16 protein in glioma formation and progression and their relationship with each other, LSAB immunohistochemical staining method and non-isotopic PCR-SSCP techniques were used to detect the expression of MDM2, P53 and P16 protein and p53 gene mutation in 48 cases of gliomas. The results showed that the positive expression rate of MDM2, P53 and the negative rate of P16 was 22.9 %, 41.7 % and 60.4 %, respectively. The latter two in high grade (grade Ⅲ , Ⅳ) gliomas had a significantly higher rate than in the low grade (grade Ⅱ ) gliomas. Moreover, the co-expression of MDM2 and P53 protein was confirmed in only 1 of 48 cases. No significant difference was found in the rate of the expression of MDM2 between high grade and low grade gliomas (P〉0.1) . PCR-SSCP results showed that mutation of 5 --8 exons of p53 gene was detected in 17 out of 48 cases (35.42 %) . Mutation was detected in 16 of 20 cases of positive p53 expression, and another one was detected in 28 cases of negative expression cases. The correlation between p53 mutation and p53 immunopositivity was observed in 89.6 % of the cases. P53 gene mutation and the level of MDM2, P53 and PI6 protein were not related to age, gender of the patients, tumor location and size. It is concluded that the mutation of p53 and deletion of p16 might play important roles in the tumorigenesis of gliomas and it was significantly associated with the grade of tumor differentiation. P53 protein accumulation can indirectly reflect p53 mutation. MDM2 amplification and overexpression might be an early event in the growth of human gliomas. 展开更多
关键词 GLIOMAS gene mutation gene product
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