We developed a new approach for the reconstruction of phylogeny trees based on the chaos game representation (CGR) of biological sequences. The chaos game representation (CGR) method generates a picture from a biologi...We developed a new approach for the reconstruction of phylogeny trees based on the chaos game representation (CGR) of biological sequences. The chaos game representation (CGR) method generates a picture from a biological sequence, which displays both local and global patterns. The quantitative index of the biological sequence is extracted from the picture. The Kullback-Leibler discrimination information is used as a diversity indicator to measure the dissimilarity of each pair of biological sequences. The new method is inspected by two data sets: the Eutherian orders using concatenated H-stranded amino acid sequences and the genome sequence of the SARS and coronavirus. The phylogeny trees constructed by the new method are consistent with the commonly accepted ones. These results are very promising and suggest more efforts for further developments.展开更多
In this paper, a method to initiate, develop and visualize an abstract syntax tree (AST) in C++ source code is presented. The approach is in chronological order starting with collection of program codes as a string an...In this paper, a method to initiate, develop and visualize an abstract syntax tree (AST) in C++ source code is presented. The approach is in chronological order starting with collection of program codes as a string and split into individual characters using regular expression. This will be followed by separating the token grammar using best first search (BFS) algorithm to determine node having lowest value, lastly followed by graph presentation of intermediate representation achieved with the help of graph visualization software (GraphViz) while former is implemented using python programming language version 3. The efficacy of our approach is used in analyzing C++ code and yielded a satisfactory result.展开更多
The paper considers Voss type representation of amino acids and uses FFT on the represented binary sequences to get the spectrum in the frequency domain. Based on the analysis of this spectrum by using the method of i...The paper considers Voss type representation of amino acids and uses FFT on the represented binary sequences to get the spectrum in the frequency domain. Based on the analysis of this spectrum by using the method of inter coefficient difference (ICD), it compares protein sequences of ND5 and ND6 category. Results obtained agree with the standard ones. The purpose of the paper is to extend the ICD method of comparison of DNA sequences to comparison of protein sequences. The topic of discussion is to develop a novel method of comparing protein sequences. The main achievements of the work are that the method applied is completely new of its kind, so far as protein sequence comparison is concerned and moreover the results of comparison agree with the previous results obtained by other methods for the same category of protein sequences.展开更多
Due to more tag-collisions result in failed transmissions,tag anti-collision is a very vital issue in the radio frequency identification(RFID) system.However,so far decreases in communication time and increases in thr...Due to more tag-collisions result in failed transmissions,tag anti-collision is a very vital issue in the radio frequency identification(RFID) system.However,so far decreases in communication time and increases in throughput are very limited.In order to solve these problems,this paper presents a novel tag anti-collision scheme,namely adaptive hybrid search tree(AHST),by combining two algorithms of the adaptive binary-tree disassembly(ABD) and the combination query tree(CQT),in which ABD has superior tag identification velocity and CQT has optimum performance in system throughput and search timeslots.From the theoretical analysis and numerical simulations,the proposed algorithm can colligate the advantages of above algorithms,improve the system throughput and reduce the searching timeslots dramatically.展开更多
As far as the weighted digraph is considered, an optimal directed spanning tree algorithm called table based algorithm (TBA) is proposed in the paper based on the table instead of the weighted digraph. The optimality ...As far as the weighted digraph is considered, an optimal directed spanning tree algorithm called table based algorithm (TBA) is proposed in the paper based on the table instead of the weighted digraph. The optimality is proved, and a numerical example is demonstrated.展开更多
As far as the weight digraph is considered, based on the table instead of the weightdigraph, an optimal spanning tree method called the Table Operations Method (TOM) is proposed.And the optimality is proved and a nume...As far as the weight digraph is considered, based on the table instead of the weightdigraph, an optimal spanning tree method called the Table Operations Method (TOM) is proposed.And the optimality is proved and a numerical example is demonstrated.展开更多
Software projects are becoming larger and more complicated. Managing those projects is based on several software development methodologies. One of those methodologies is software version control, which is used in the ...Software projects are becoming larger and more complicated. Managing those projects is based on several software development methodologies. One of those methodologies is software version control, which is used in the majority of worldwide software projects. Although existing version control systems provide sufficient functionality in many situations, they are lacking in terms of semantics and structure for source code. It is commonly believed that improving software version control can contribute substantially to the development of software. We present a solution that considers a structural model for matching source code that can be used in version control.展开更多
In this paper,a survey of octree representation and its applications in CAD is presented.The octree representation may be categorized as pure octree representation and polytree(or extended octree),and the latter is ac...In this paper,a survey of octree representation and its applications in CAD is presented.The octree representation may be categorized as pure octree representation and polytree(or extended octree),and the latter is actually a boundary representation decomposed by octree.Linear octree which is a variant of regular octree representation has the advantage of saving memory space. The mapping between Cartesian coordinates and node addresses in linear octree is discussed.Then, algorithms for converting a boundary representation of 3D object into an octree are investigated and major approaches for transforming an octree encoded object are presented.After that,some of the applications of octree representation in CAD are listed,in particular,the applications in solid mod- eling,in accelerating ray tracing and in generating meshes for FEM.展开更多
We present a new data structure for the representation of an integrated circuit layout. It is a modified HV/VH tree using arrays as the primary container in bisector lists and leaf nodes. By grouping and sorting objec...We present a new data structure for the representation of an integrated circuit layout. It is a modified HV/VH tree using arrays as the primary container in bisector lists and leaf nodes. By grouping and sorting objects within these arrays together with a customized binary search algorithm, our new data structure provides excellent performance in both memory usage and region query speed. Experimental results show that in comparison with the original HV/VH tree, which has been regarded as the best layout data structure to date, the new data structure uses much less memory and can become 30% faster on region query.展开更多
文摘We developed a new approach for the reconstruction of phylogeny trees based on the chaos game representation (CGR) of biological sequences. The chaos game representation (CGR) method generates a picture from a biological sequence, which displays both local and global patterns. The quantitative index of the biological sequence is extracted from the picture. The Kullback-Leibler discrimination information is used as a diversity indicator to measure the dissimilarity of each pair of biological sequences. The new method is inspected by two data sets: the Eutherian orders using concatenated H-stranded amino acid sequences and the genome sequence of the SARS and coronavirus. The phylogeny trees constructed by the new method are consistent with the commonly accepted ones. These results are very promising and suggest more efforts for further developments.
文摘In this paper, a method to initiate, develop and visualize an abstract syntax tree (AST) in C++ source code is presented. The approach is in chronological order starting with collection of program codes as a string and split into individual characters using regular expression. This will be followed by separating the token grammar using best first search (BFS) algorithm to determine node having lowest value, lastly followed by graph presentation of intermediate representation achieved with the help of graph visualization software (GraphViz) while former is implemented using python programming language version 3. The efficacy of our approach is used in analyzing C++ code and yielded a satisfactory result.
文摘The paper considers Voss type representation of amino acids and uses FFT on the represented binary sequences to get the spectrum in the frequency domain. Based on the analysis of this spectrum by using the method of inter coefficient difference (ICD), it compares protein sequences of ND5 and ND6 category. Results obtained agree with the standard ones. The purpose of the paper is to extend the ICD method of comparison of DNA sequences to comparison of protein sequences. The topic of discussion is to develop a novel method of comparing protein sequences. The main achievements of the work are that the method applied is completely new of its kind, so far as protein sequence comparison is concerned and moreover the results of comparison agree with the previous results obtained by other methods for the same category of protein sequences.
基金Supported by the National Natural Science Foundation of China(No.61401407)
文摘Due to more tag-collisions result in failed transmissions,tag anti-collision is a very vital issue in the radio frequency identification(RFID) system.However,so far decreases in communication time and increases in throughput are very limited.In order to solve these problems,this paper presents a novel tag anti-collision scheme,namely adaptive hybrid search tree(AHST),by combining two algorithms of the adaptive binary-tree disassembly(ABD) and the combination query tree(CQT),in which ABD has superior tag identification velocity and CQT has optimum performance in system throughput and search timeslots.From the theoretical analysis and numerical simulations,the proposed algorithm can colligate the advantages of above algorithms,improve the system throughput and reduce the searching timeslots dramatically.
基金the National Natural Science Foundation of China (No. 79870030).
文摘As far as the weighted digraph is considered, an optimal directed spanning tree algorithm called table based algorithm (TBA) is proposed in the paper based on the table instead of the weighted digraph. The optimality is proved, and a numerical example is demonstrated.
文摘As far as the weight digraph is considered, based on the table instead of the weightdigraph, an optimal spanning tree method called the Table Operations Method (TOM) is proposed.And the optimality is proved and a numerical example is demonstrated.
文摘Software projects are becoming larger and more complicated. Managing those projects is based on several software development methodologies. One of those methodologies is software version control, which is used in the majority of worldwide software projects. Although existing version control systems provide sufficient functionality in many situations, they are lacking in terms of semantics and structure for source code. It is commonly believed that improving software version control can contribute substantially to the development of software. We present a solution that considers a structural model for matching source code that can be used in version control.
文摘In this paper,a survey of octree representation and its applications in CAD is presented.The octree representation may be categorized as pure octree representation and polytree(or extended octree),and the latter is actually a boundary representation decomposed by octree.Linear octree which is a variant of regular octree representation has the advantage of saving memory space. The mapping between Cartesian coordinates and node addresses in linear octree is discussed.Then, algorithms for converting a boundary representation of 3D object into an octree are investigated and major approaches for transforming an octree encoded object are presented.After that,some of the applications of octree representation in CAD are listed,in particular,the applications in solid mod- eling,in accelerating ray tracing and in generating meshes for FEM.
基金supported by the National Natural Science Foundation of China (No. 61106034)the National Science and Technology Major Project (No. 2009ZX02023-004-1)
文摘We present a new data structure for the representation of an integrated circuit layout. It is a modified HV/VH tree using arrays as the primary container in bisector lists and leaf nodes. By grouping and sorting objects within these arrays together with a customized binary search algorithm, our new data structure provides excellent performance in both memory usage and region query speed. Experimental results show that in comparison with the original HV/VH tree, which has been regarded as the best layout data structure to date, the new data structure uses much less memory and can become 30% faster on region query.
