Biomedical data classification has become a hot research topic in recent years,thanks to the latest technological advancements made in healthcare.Biome-dical data is usually examined by physicians for decision making ...Biomedical data classification has become a hot research topic in recent years,thanks to the latest technological advancements made in healthcare.Biome-dical data is usually examined by physicians for decision making process in patient treatment.Since manual diagnosis is a tedious and time consuming task,numerous automated models,using Artificial Intelligence(AI)techniques,have been presented so far.With this motivation,the current research work presents a novel Biomedical Data Classification using Cat and Mouse Based Optimizer with AI(BDC-CMBOAI)technique.The aim of the proposed BDC-CMBOAI technique is to determine the occurrence of diseases using biomedical data.Besides,the proposed BDC-CMBOAI technique involves the design of Cat and Mouse Optimizer-based Feature Selection(CMBO-FS)technique to derive a useful subset of features.In addition,Ridge Regression(RR)model is also utilized as a classifier to identify the existence of disease.The novelty of the current work is its designing of CMBO-FS model for data classification.Moreover,CMBO-FS technique is used to get rid of unwanted features and boosts the classification accuracy.The results of the experimental analysis accomplished by BDC-CMBOAI technique on benchmark medical dataset established the supremacy of the proposed technique under different evaluation measures.展开更多
The biomedical data classification process has received significant attention in recent times due to a massive increase in the generation of healthcare data from various sources.The developments of artificial intellig...The biomedical data classification process has received significant attention in recent times due to a massive increase in the generation of healthcare data from various sources.The developments of artificial intelligence(AI)and machine learning(ML)models assist in the effectual design of medical data classification models.Therefore,this article concentrates on the development of optimal Stacked Long Short Term Memory Sequence-toSequence Autoencoder(OSAE-LSTM)model for biomedical data classification.The presented OSAE-LSTM model intends to classify the biomedical data for the existence of diseases.Primarily,the OSAE-LSTM model involves min-max normalization based pre-processing to scale the data into uniform format.Followed by,the SAE-LSTM model is utilized for the detection and classification of diseases in biomedical data.At last,manta ray foraging optimization(MRFO)algorithm has been employed for hyperparameter optimization process.The utilization of MRFO algorithm assists in optimal selection of hypermeters involved in the SAE-LSTM model.The simulation analysis of the OSAE-LSTM model has been tested using a set of benchmark medical datasets and the results reported the improvements of the OSAELSTM model over the other approaches under several dimensions.展开更多
tmbalanced data is a common and serious problem in many biomedical classification tasks. It causes a bias on the training of classifiers and results in lower accuracy of minority classes prediction. This problem has a...tmbalanced data is a common and serious problem in many biomedical classification tasks. It causes a bias on the training of classifiers and results in lower accuracy of minority classes prediction. This problem has attracted a lot of research interests in the past decade. Unfortunately, most research efforts only concentrate on 2-class problems. In this paper, we study a new method of formulating a multiclass Support Vector Machine (SVM) problem for imbalanced biomedical data to improve the classification performance. The proposed method applies cost-sensitive approach and ramp loss function to the Crammer and Singer multiclass SVM formulation. Experimental results on multiple biomedical datasets show that the proposed solution can effectively cure the problem when the datasets are noisy and highly imbalanced.展开更多
In recent years, there have been rapid developments in various bioinformatics technologies, which have led to the accumulation of a large amount of biomedical data. The biomedical data can be analyzed to enhance asses...In recent years, there have been rapid developments in various bioinformatics technologies, which have led to the accumulation of a large amount of biomedical data. The biomedical data can be analyzed to enhance assessment of at-risk patients and improve disease diagnosis, treatment, and prevention. However, these datasets usually have many features, which contain many irrelevant or redundant information. Feature selection is a solution that involves finding the optimal subset, which is known to be an NP problem because of the large search space. Considering this, a new feature selection approach based on Binary Chemical Reaction Optimization algorithm (BCRO) and k-Nearest Neighbors (KNN) classifier is presented in this paper. Tabu search is integrated with CRO framework to enhance local search capacity. KNN is adopted to evaluate the quality of selected candidate subset. The results for an experiment conducted on nine standard medical datasets demonstrate that the proposed approach outperforms other state-of-the-art methods.展开更多
With new developments experienced in Internet of Things(IoT),wearable,and sensing technology,the value of healthcare services has enhanced.This evolution has brought significant changes from conventional medicine-base...With new developments experienced in Internet of Things(IoT),wearable,and sensing technology,the value of healthcare services has enhanced.This evolution has brought significant changes from conventional medicine-based healthcare to real-time observation-based healthcare.Biomedical Electrocardiogram(ECG)signals are generally utilized in examination and diagnosis of Cardiovascular Diseases(CVDs)since it is quick and non-invasive in nature.Due to increasing number of patients in recent years,the classifier efficiency gets reduced due to high variances observed in ECG signal patterns obtained from patients.In such scenario computer-assisted automated diagnostic tools are important for classification of ECG signals.The current study devises an Improved Bat Algorithm with Deep Learning Based Biomedical ECGSignal Classification(IBADL-BECGC)approach.To accomplish this,the proposed IBADL-BECGC model initially pre-processes the input signals.Besides,IBADL-BECGC model applies NasNet model to derive the features from test ECG signals.In addition,Improved Bat Algorithm(IBA)is employed to optimally fine-tune the hyperparameters related to NasNet approach.Finally,Extreme Learning Machine(ELM)classification algorithm is executed to perform ECG classification method.The presented IBADL-BECGC model was experimentally validated utilizing benchmark dataset.The comparison study outcomes established the improved performance of IBADL-BECGC model over other existing methodologies since the former achieved a maximum accuracy of 97.49%.展开更多
Atherosclerosis diagnosis is an inarticulate and complicated cognitive process.Researches on medical diagnosis necessitate maximum accuracy and performance to make optimal clinical decisions.Since the medical diagnost...Atherosclerosis diagnosis is an inarticulate and complicated cognitive process.Researches on medical diagnosis necessitate maximum accuracy and performance to make optimal clinical decisions.Since the medical diagnostic outcomes need to be prompt and accurate,the recently developed artificial intelligence(AI)and deep learning(DL)models have received considerable attention among research communities.This study develops a novel Metaheuristics with Deep Learning Empowered Biomedical Atherosclerosis Disease Diagnosis and Classification(MDL-BADDC)model.The proposed MDL-BADDC technique encompasses several stages of operations such as pre-processing,feature selection,classification,and parameter tuning.Besides,the proposed MDL-BADDC technique designs a novel Quasi-Oppositional Barnacles Mating Optimizer(QOBMO)based feature selection technique.Moreover,the deep stacked autoencoder(DSAE)based classification model is designed for the detection and classification of atherosclerosis disease.Furthermore,the krill herd algorithm(KHA)based parameter tuning technique is applied to properly adjust the parameter values.In order to showcase the enhanced classification performance of the MDL-BADDC technique,a wide range of simulations take place on three benchmarks biomedical datasets.The comparative result analysis reported the better performance of the MDL-BADDC technique over the compared methods.展开更多
Autism spectrum disorder(ASD)is regarded as a neurological disorder well-defined by a specific set of problems associated with social skills,recurrent conduct,and communication.Identifying ASD as soon as possible is f...Autism spectrum disorder(ASD)is regarded as a neurological disorder well-defined by a specific set of problems associated with social skills,recurrent conduct,and communication.Identifying ASD as soon as possible is favourable due to prior identification of ASD permits prompt interferences in children with ASD.Recognition of ASD related to objective pathogenicmutation screening is the initial step against prior intervention and efficient treatment of children who were affected.Nowadays,healthcare and machine learning(ML)industries are combined for determining the existence of various diseases.This article devises a Jellyfish Search Optimization with Deep Learning Driven ASD Detection and Classification(JSODL-ASDDC)model.The goal of the JSODL-ASDDC algorithm is to identify the different stages of ASD with the help of biomedical data.The proposed JSODLASDDC model initially performs min-max data normalization approach to scale the data into uniform range.In addition,the JSODL-ASDDC model involves JSO based feature selection(JFSO-FS)process to choose optimal feature subsets.Moreover,Gated Recurrent Unit(GRU)based classification model is utilized for the recognition and classification of ASD.Furthermore,the Bacterial Foraging Optimization(BFO)assisted parameter tuning process gets executed to enhance the efficacy of the GRU system.The experimental assessment of the JSODL-ASDDC model is investigated against distinct datasets.The experimental outcomes highlighted the enhanced performances of the JSODL-ASDDC algorithm over recent approaches.展开更多
The promise that big data will revolutionize scientific discovery and technology innovation is now being widely recognized. With the explosive growth of biomedical data, life science is being transformed into a digita...The promise that big data will revolutionize scientific discovery and technology innovation is now being widely recognized. With the explosive growth of biomedical data, life science is being transformed into a digital science in which novel insights are gained from in-depth data analysis and modeling. Extensive and innovative utilization of biomedical big data is a key to the success of precision medicine. Therefore, constructing a centralized national-level biomedical big data infrastructure becomes crucial and urgent for China. Such infrastructure should achieve superb capacity of safe data storage, standardized data processing and quality control, systematic data integration across multiple types, and in-depth data mining and effective data sharing. Full data chain service including information retrieval, knowledge discovery and technology support can be provided to data centers, research institutes and healthcare industries. Relying on Shanghai Institutes for Biological Sciences, agreements have been signed that a main node of the infrastructure will be located in Shanghai, and a backup node will be set up in Guizhou Province. After a construction period of five years, the infrastructure should greatly enhance China's core competence in collection, interpretation and application of biomedical big data.展开更多
Since the boom of biomedical big data studies,various big data processing technologies have been developed rapidly.As an important form of knowledge representation,ontology has become an important means for the utiliz...Since the boom of biomedical big data studies,various big data processing technologies have been developed rapidly.As an important form of knowledge representation,ontology has become an important means for the utilization and integration of biomedical big data.The emergence of new technologies for ontology development has resulted in the generation of many biomedical ontologies by many ontology development communities.The Open Biological and Biomedical Ontology Foundry,an academic organization for bio-ontology developers,has provided a set of principles to guide community-based open ontology construction.The Open Biological and Biomedical Ontology Foundry have also built many widely used ontologies,such as Gene Ontology,Human Phenotype Ontology,and Chemical Entities of Biological Interest.Other various ontology repositories have also been created and used to support ontology reuse.Many efficient tools for ontology applications,such as data annotation and terms mapping,have also been developed.High quality ontologies are also being used to develop new methods and tools for biomedical data analysis.The applications of Gene Ontology and Human Phenotype Ontology for data analysis and integration in recent years are reviewed here.To promote the development and applications of biomedical ontologies in China,a research community,OntoChina,was founded recently.OntoChina aims to support the development of reference ontologies,especially bilingual and Chinese translated ontologies.OntoChina also encourages ontology developers to follow the Open Biological and Biomedical Ontology Foundry principles.展开更多
With the progression of modern information techniques,such as next generation sequencing(NGS),Internet of Everything(IoE)based smart sensors,and artificial intelligence algorithms,data-intensive research and applicati...With the progression of modern information techniques,such as next generation sequencing(NGS),Internet of Everything(IoE)based smart sensors,and artificial intelligence algorithms,data-intensive research and applications are emerging as the fourth paradigm for scientific discovery.However,we facemany challenges to practical application of this paradigm.In this article,10 challenges to data-intensive discovery and applications in precision medicine and healthcare are summarized and the future perspectives on next generation medicine are discussed.展开更多
基金Princess Nourah bint Abdulrahman University Researchers Supporting Project number(PNURSP2022R203)Princess Nourah bint Abdulrahman University,Riyadh,Saudi ArabiaThe authors would like to thank the Deanship of Scientific Research at Umm Al-Qura University for supporting this work by Grant Code:22UQU4340237DSR03.
文摘Biomedical data classification has become a hot research topic in recent years,thanks to the latest technological advancements made in healthcare.Biome-dical data is usually examined by physicians for decision making process in patient treatment.Since manual diagnosis is a tedious and time consuming task,numerous automated models,using Artificial Intelligence(AI)techniques,have been presented so far.With this motivation,the current research work presents a novel Biomedical Data Classification using Cat and Mouse Based Optimizer with AI(BDC-CMBOAI)technique.The aim of the proposed BDC-CMBOAI technique is to determine the occurrence of diseases using biomedical data.Besides,the proposed BDC-CMBOAI technique involves the design of Cat and Mouse Optimizer-based Feature Selection(CMBO-FS)technique to derive a useful subset of features.In addition,Ridge Regression(RR)model is also utilized as a classifier to identify the existence of disease.The novelty of the current work is its designing of CMBO-FS model for data classification.Moreover,CMBO-FS technique is used to get rid of unwanted features and boosts the classification accuracy.The results of the experimental analysis accomplished by BDC-CMBOAI technique on benchmark medical dataset established the supremacy of the proposed technique under different evaluation measures.
基金The authors extend their appreciation to the Deanship of Scientific Research at King Khalid University for funding this work under grant number(RGP 2/158/43)Princess Nourah bint Abdulrahman University Researchers Supporting Project number(PNURSP2022R235)Princess Nourah bint Abdulrahman University,Riyadh,Saudi Arabia.The authors would like to thank the Deanship of Scientific Research at Umm Al-Qura University for supporting this work by Grant Code:(22UQU4340237DSR06).
文摘The biomedical data classification process has received significant attention in recent times due to a massive increase in the generation of healthcare data from various sources.The developments of artificial intelligence(AI)and machine learning(ML)models assist in the effectual design of medical data classification models.Therefore,this article concentrates on the development of optimal Stacked Long Short Term Memory Sequence-toSequence Autoencoder(OSAE-LSTM)model for biomedical data classification.The presented OSAE-LSTM model intends to classify the biomedical data for the existence of diseases.Primarily,the OSAE-LSTM model involves min-max normalization based pre-processing to scale the data into uniform format.Followed by,the SAE-LSTM model is utilized for the detection and classification of diseases in biomedical data.At last,manta ray foraging optimization(MRFO)algorithm has been employed for hyperparameter optimization process.The utilization of MRFO algorithm assists in optimal selection of hypermeters involved in the SAE-LSTM model.The simulation analysis of the OSAE-LSTM model has been tested using a set of benchmark medical datasets and the results reported the improvements of the OSAELSTM model over the other approaches under several dimensions.
基金Supported by GSU Molecular Basis of Disease Graduate Fellow, 2011-2012
文摘tmbalanced data is a common and serious problem in many biomedical classification tasks. It causes a bias on the training of classifiers and results in lower accuracy of minority classes prediction. This problem has attracted a lot of research interests in the past decade. Unfortunately, most research efforts only concentrate on 2-class problems. In this paper, we study a new method of formulating a multiclass Support Vector Machine (SVM) problem for imbalanced biomedical data to improve the classification performance. The proposed method applies cost-sensitive approach and ramp loss function to the Crammer and Singer multiclass SVM formulation. Experimental results on multiple biomedical datasets show that the proposed solution can effectively cure the problem when the datasets are noisy and highly imbalanced.
基金supported in part by the Natural Science Foundation of Henan Province(No.14A520042)Scientific Research Foundation of the Higher Education Institutions of Henan Province(No.18A520021)+1 种基金the National Natural Science Foundation of China(No.61802114)the National Key Technology R&D Program of China(No.2015BAK01B06)
文摘In recent years, there have been rapid developments in various bioinformatics technologies, which have led to the accumulation of a large amount of biomedical data. The biomedical data can be analyzed to enhance assessment of at-risk patients and improve disease diagnosis, treatment, and prevention. However, these datasets usually have many features, which contain many irrelevant or redundant information. Feature selection is a solution that involves finding the optimal subset, which is known to be an NP problem because of the large search space. Considering this, a new feature selection approach based on Binary Chemical Reaction Optimization algorithm (BCRO) and k-Nearest Neighbors (KNN) classifier is presented in this paper. Tabu search is integrated with CRO framework to enhance local search capacity. KNN is adopted to evaluate the quality of selected candidate subset. The results for an experiment conducted on nine standard medical datasets demonstrate that the proposed approach outperforms other state-of-the-art methods.
基金the Deanship of Scientific Research at King Khalid University for funding this work through Large Groups Project under Grant Number(71/43)Princess Nourah Bint Abdulrahman University Researchers Supporting Project Number(PNURSP2022R203)Princess Nourah Bint Abdulrahman University,Riyadh,Saudi Arabia.The authors would like to thank the Deanship of Scientific Research at Umm Al-Qura University for supporting this work by Grant Code:(22UQU4310373DSR29).
文摘With new developments experienced in Internet of Things(IoT),wearable,and sensing technology,the value of healthcare services has enhanced.This evolution has brought significant changes from conventional medicine-based healthcare to real-time observation-based healthcare.Biomedical Electrocardiogram(ECG)signals are generally utilized in examination and diagnosis of Cardiovascular Diseases(CVDs)since it is quick and non-invasive in nature.Due to increasing number of patients in recent years,the classifier efficiency gets reduced due to high variances observed in ECG signal patterns obtained from patients.In such scenario computer-assisted automated diagnostic tools are important for classification of ECG signals.The current study devises an Improved Bat Algorithm with Deep Learning Based Biomedical ECGSignal Classification(IBADL-BECGC)approach.To accomplish this,the proposed IBADL-BECGC model initially pre-processes the input signals.Besides,IBADL-BECGC model applies NasNet model to derive the features from test ECG signals.In addition,Improved Bat Algorithm(IBA)is employed to optimally fine-tune the hyperparameters related to NasNet approach.Finally,Extreme Learning Machine(ELM)classification algorithm is executed to perform ECG classification method.The presented IBADL-BECGC model was experimentally validated utilizing benchmark dataset.The comparison study outcomes established the improved performance of IBADL-BECGC model over other existing methodologies since the former achieved a maximum accuracy of 97.49%.
基金The authors extend their appreciation to the Deanship of Scientific Research at King Khalid University for funding this work under Grant Number(RGP 2/279/43)Princess Nourah bint Abdulrahman University Researchers Supporting Project Number(PNURSP2022R151),Princess Nourah bint Abdulrahman University,Riyadh,Saudi Arabia.
文摘Atherosclerosis diagnosis is an inarticulate and complicated cognitive process.Researches on medical diagnosis necessitate maximum accuracy and performance to make optimal clinical decisions.Since the medical diagnostic outcomes need to be prompt and accurate,the recently developed artificial intelligence(AI)and deep learning(DL)models have received considerable attention among research communities.This study develops a novel Metaheuristics with Deep Learning Empowered Biomedical Atherosclerosis Disease Diagnosis and Classification(MDL-BADDC)model.The proposed MDL-BADDC technique encompasses several stages of operations such as pre-processing,feature selection,classification,and parameter tuning.Besides,the proposed MDL-BADDC technique designs a novel Quasi-Oppositional Barnacles Mating Optimizer(QOBMO)based feature selection technique.Moreover,the deep stacked autoencoder(DSAE)based classification model is designed for the detection and classification of atherosclerosis disease.Furthermore,the krill herd algorithm(KHA)based parameter tuning technique is applied to properly adjust the parameter values.In order to showcase the enhanced classification performance of the MDL-BADDC technique,a wide range of simulations take place on three benchmarks biomedical datasets.The comparative result analysis reported the better performance of the MDL-BADDC technique over the compared methods.
文摘Autism spectrum disorder(ASD)is regarded as a neurological disorder well-defined by a specific set of problems associated with social skills,recurrent conduct,and communication.Identifying ASD as soon as possible is favourable due to prior identification of ASD permits prompt interferences in children with ASD.Recognition of ASD related to objective pathogenicmutation screening is the initial step against prior intervention and efficient treatment of children who were affected.Nowadays,healthcare and machine learning(ML)industries are combined for determining the existence of various diseases.This article devises a Jellyfish Search Optimization with Deep Learning Driven ASD Detection and Classification(JSODL-ASDDC)model.The goal of the JSODL-ASDDC algorithm is to identify the different stages of ASD with the help of biomedical data.The proposed JSODLASDDC model initially performs min-max data normalization approach to scale the data into uniform range.In addition,the JSODL-ASDDC model involves JSO based feature selection(JFSO-FS)process to choose optimal feature subsets.Moreover,Gated Recurrent Unit(GRU)based classification model is utilized for the recognition and classification of ASD.Furthermore,the Bacterial Foraging Optimization(BFO)assisted parameter tuning process gets executed to enhance the efficacy of the GRU system.The experimental assessment of the JSODL-ASDDC model is investigated against distinct datasets.The experimental outcomes highlighted the enhanced performances of the JSODL-ASDDC algorithm over recent approaches.
文摘The promise that big data will revolutionize scientific discovery and technology innovation is now being widely recognized. With the explosive growth of biomedical data, life science is being transformed into a digital science in which novel insights are gained from in-depth data analysis and modeling. Extensive and innovative utilization of biomedical big data is a key to the success of precision medicine. Therefore, constructing a centralized national-level biomedical big data infrastructure becomes crucial and urgent for China. Such infrastructure should achieve superb capacity of safe data storage, standardized data processing and quality control, systematic data integration across multiple types, and in-depth data mining and effective data sharing. Full data chain service including information retrieval, knowledge discovery and technology support can be provided to data centers, research institutes and healthcare industries. Relying on Shanghai Institutes for Biological Sciences, agreements have been signed that a main node of the infrastructure will be located in Shanghai, and a backup node will be set up in Guizhou Province. After a construction period of five years, the infrastructure should greatly enhance China's core competence in collection, interpretation and application of biomedical big data.
基金This work was supported by Chinese Academy of Medical Science(CAMS)Innovation Fund for Medical Sciences(CIFMS)(No.2018-I2M-AI-009 to XY)Independent Subject Project Funded by Basic Scientific Research Fund of Chinese Academy of Chinese Medical Science(No.zz110318 to YZ)the University of Michigan Global Reach Award(to YH).
文摘Since the boom of biomedical big data studies,various big data processing technologies have been developed rapidly.As an important form of knowledge representation,ontology has become an important means for the utilization and integration of biomedical big data.The emergence of new technologies for ontology development has resulted in the generation of many biomedical ontologies by many ontology development communities.The Open Biological and Biomedical Ontology Foundry,an academic organization for bio-ontology developers,has provided a set of principles to guide community-based open ontology construction.The Open Biological and Biomedical Ontology Foundry have also built many widely used ontologies,such as Gene Ontology,Human Phenotype Ontology,and Chemical Entities of Biological Interest.Other various ontology repositories have also been created and used to support ontology reuse.Many efficient tools for ontology applications,such as data annotation and terms mapping,have also been developed.High quality ontologies are also being used to develop new methods and tools for biomedical data analysis.The applications of Gene Ontology and Human Phenotype Ontology for data analysis and integration in recent years are reviewed here.To promote the development and applications of biomedical ontologies in China,a research community,OntoChina,was founded recently.OntoChina aims to support the development of reference ontologies,especially bilingual and Chinese translated ontologies.OntoChina also encourages ontology developers to follow the Open Biological and Biomedical Ontology Foundry principles.
基金This work was supported by the regional innovation cooperation between Sichuan and Guangxi Provinces(Grant No.2020YFQ0019)the National Natural Science Foundation of China(Grant No.32070671).
文摘With the progression of modern information techniques,such as next generation sequencing(NGS),Internet of Everything(IoE)based smart sensors,and artificial intelligence algorithms,data-intensive research and applications are emerging as the fourth paradigm for scientific discovery.However,we facemany challenges to practical application of this paradigm.In this article,10 challenges to data-intensive discovery and applications in precision medicine and healthcare are summarized and the future perspectives on next generation medicine are discussed.