[Objective] The aim was to set up a plant digital information retrieval system.[Method] Plant digital information retrieval system was designed by combining with Microsoft Visual Basic 6.0 Enterprise Edition database ...[Objective] The aim was to set up a plant digital information retrieval system.[Method] Plant digital information retrieval system was designed by combining with Microsoft Visual Basic 6.0 Enterprise Edition database management system and Structure Query Language.[Result] The system realized electronic management and retrieval of local plant information.The key words of retrieval included family,genus,formal name,Chinese name,Latin,morphological characteristics,habitat,collection people,collection places,and protect class and so on.[Conclusion] It provided reference for these problems of species identification and digital management of herbarium.展开更多
Stress Knowledge Map(SKM;https://skm.nib.si)is a publicly available resource containing two complementary knowledge graphs that describe the current knowledge of biochemical,signaling,and regulatory molecular interact...Stress Knowledge Map(SKM;https://skm.nib.si)is a publicly available resource containing two complementary knowledge graphs that describe the current knowledge of biochemical,signaling,and regulatory molecular interactions in plants:a highly curated model of plant stress signaling(PSS;543 reactions)and a large comprehensive knowledge network(488390 interactions).Both were constructed by domain experts through systematic curation of diverse literature and database resources.SKM provides a single entry point for investigations of plant stress response and related growth trade-offs,as well as interactive explorations of current knowledge.PSS is also formulated as a qualitative and quantitative model for systems biology and thus represents a starting point for a plant digital twin.Here,we describe the features of SKM and show,through two case studies,how it can be used for complex analyses,including systematic hypothesis generation and design of validation experiments,or to gain new insights into experimental observations in plant biology.展开更多
基金Supported by Inner Mongolia Natural Science Fund(20080404MS0507)National Natural Science Fund(30660150)+1 种基金Education Ministry Higher Education School Science Innovation Project Major Program Cultivation Fund Program(707014)Inner Mongolia Natural Scientific Fund Major Program(200607010501)~~
文摘[Objective] The aim was to set up a plant digital information retrieval system.[Method] Plant digital information retrieval system was designed by combining with Microsoft Visual Basic 6.0 Enterprise Edition database management system and Structure Query Language.[Result] The system realized electronic management and retrieval of local plant information.The key words of retrieval included family,genus,formal name,Chinese name,Latin,morphological characteristics,habitat,collection people,collection places,and protect class and so on.[Conclusion] It provided reference for these problems of species identification and digital management of herbarium.
基金funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement 862858(ADAPT)the Slovenian Research Agency under grant agreements 1000-15-0105,Z7-1888,J4-1777,P4-0165,N4-0199,Z4-50146,and J4-3089ELIXIR,the research infrastructure for life science data through the ELIXIR Implementation Study“Increasing plant data findability for ELIXIR and beyond”and ELIXIR-SI.We gratefully acknowledge funding from the Deutsche Forschungsgemeinschaft(DFG)to U.C.V.(INST 217/939-1 FUGG).
文摘Stress Knowledge Map(SKM;https://skm.nib.si)is a publicly available resource containing two complementary knowledge graphs that describe the current knowledge of biochemical,signaling,and regulatory molecular interactions in plants:a highly curated model of plant stress signaling(PSS;543 reactions)and a large comprehensive knowledge network(488390 interactions).Both were constructed by domain experts through systematic curation of diverse literature and database resources.SKM provides a single entry point for investigations of plant stress response and related growth trade-offs,as well as interactive explorations of current knowledge.PSS is also formulated as a qualitative and quantitative model for systems biology and thus represents a starting point for a plant digital twin.Here,we describe the features of SKM and show,through two case studies,how it can be used for complex analyses,including systematic hypothesis generation and design of validation experiments,or to gain new insights into experimental observations in plant biology.
