Genome-wide association study dissecting drought resistance-associated loci based on physiological traits in common bean

Genetic improvement of drought resistance is one of the main breeding goals for common bean,so molecular markers must be identified to facilitate drought resistance breeding.In this study,we evaluated the proline,trehalose,raffinose,and stachyose contents of 210 common bean accessions under two watering conditions and found large variations in all four.The coefficients of variation ranged from 21.21%for proline content to 78.69%for stachyose content under well-watered conditions,and from 20.11%for proline content to 50.08%for trehalose content under drought stress.According to our genome-wide association analysis,32 quantitative trait loci were associated with drought resistance,seven of which overlapped with known loci.Four hotspot regions were identified at Pv01,Pv07 and Pv11.A set of candidate genes was identified,including genes encoding MYB,bZIP,bHLH,ERF,and protein kinases.Among these genes,Phvul.001G189400,Phvul.007G273000 and Phvul.008G270500 were annotated as bZIP,ERF and WRKY,respectively.These genes are reportedly involved in drought stress responses in Arabidopsis thaliana and were induced by drought stress in common bean.Significant SNPs in six candidate gene regions formed different haplotypes,and phenotypic analysis revealed significant differences among the haplotypes.These results provide new insight into the genetic basis of drought resistance in common bean and reveal candidate genes and superior natural variations that will be useful for improving common bean.

Identification of Quantitative Trait Loci for Anthesis-Silking Interval and Yield Components Under Drought Stress in Maize

A genetic linkage map with 89 SSR marker loci was constructed based on a maize (Zea mays L.) population consisting of 184 F-2 individuals from the cross, Huangzao 4 X Ye 107. The 184 F-3 families were evaluated in the field under well-watered and drought-stressed regimes in Shanxi Province of China. The objectives of the study were to identify genetic segments responsible for the expression of anthesis-silking interval (ASI), ear setting and grain yield, and to examine if the quantitative trait loci (QTLs) for ASI or yield components can be used in marker-assisted selection (MAS) to improve grain yield under drought conditions. Results showed that under well-watered and drought-stressed regimes, three and two QTLs involved in the expression of ASI were detected on chromosomes 1, 2 and 3, and 2 and 5, respectively. Under well-watered regime, two QTLs for ear setting were detected on chromosomes 3 and 6, explaining about 19.9% of the phenotypic variance, and displayed additive and partial dominant effects, respectively. Under drought-stressed condition, four QTLs for ear setting were detected on chromosomes 3, 7 and 10, which were responsible for interpreting 60.4% of the phenotypic variance, and showed dominant or partial dominant effects. Under well-watered condition, four QTLs controlling grain yield were identified on chromosomes 3, 6 and 7, while five QTLs were identified under drought stress on chromosomes 1, 2, 4 and 8. The gene action was of additive or partial dominant effects, and each QTL could explain 7.3% to 22.0% of the phenotypic variance, respectively. Under drought conditions, ASI and ear setting percentage were highly correlated with grain yield, which can be used as secondary traits for grain yield selection. Based on linked markers detected and gene action analyzed, an MAS strategy for yield improvement under drought condition could be established, which consists of QTLs contributing to decreased ASI and to increased ear setting and grain yield, respectively.

Correlations between Drought Resistance and Shoot Traits of Mid-season Hybrid Rice

[Objective] This study aimed to investigate the correlations between the drought tolerance and plant traits of hybrid rice, so as to provide theoretical basis for the breeding of drought-tolerant rice varieties. [Method] In the field experiment in 2011, 30 hybrid rice cultivars were grown under three different conditions： drought at til ering stage, drought at panicle initiation stage and control （keeping shal ow wa-ter during the whole growth period）. Then, the main plant traits were measured, and the related drought tolerance indices were calculated. In 2012, 16 hybrid rice culti-vars were grown in pots under drought and normal water conditions respectively. And their main plant traits were measured, and the related drought tolerance indices were also calculated. [Result] The water content in soil under drought stress at til ering stage was nearly 60%, and that under drought stress at panicle initiation stage was 80%. Such low water content significantly reduced the rice yield. The cultivars with large panicle and great root growth potential had strong drought toler-ance at panicle initiation stage. Under drought stress, the cultivars with higher yield had stronger tolerance to drought. The drought tolerance indices at til ering stage had no correlations with those at panicle initiation stage. Under normal water condi-tions, the cultivars with smal er 1 000-grain weight had stronger tolerance to drought . Under drought stress , the cultivars with smal er 1 000-grain weight and higher grain yield had stronger tolerance to drought. [Conclusion] Among al the rice cultivars tested in the present study, D You 6511, Taiyou 99, Nei 5 You 317, Neixiangyou 18, Yixiangyou 7633, Tianyouhuazhan, II You 615, Neixiang 5306, Chuanguyou 7329 and Neixiang 7539 exhibited better tolerance to drought, and thus can be promoted in production.

Seasonal variations of leaf traits and drought adaptation strategies of four common woody species in South Texas, USA

Understanding physiological responses and drought adaptation strategies of woody plant leaf traits in sub-humid to semi-arid regions is of vital importance to understand the interplay between ecological processes and plant resource-allocation strategies of different tree species.Seasonal variations of leaf morphological traits,stoichiometric traits and their relationships of two drought tolerant woody species,live oak(Quercus virginiana)and honey mesquite(Prosopis glandulosa)and two less drought tolerant species,sugarberry(Celtis laevigata)and white ash(Fraxinus americana)were analyzed in a sub-humid to semi-arid area of south Texas,USA.Our findings demonstrate that for the two drought tolerant species,the leguminous P.glandulosa had the highest specific leaf area,leaf N,P,and lowest leaf area and dry mass,indicating that P.glandulosa adapts to an arid habitat by decreasing leaf area,thus reducing water loss,reflecting a resource acquisition strategy.While the evergreen species Q.virginiana exhibited higher leaf dry mass,leaf dry matter content,C content,C:N,C:P and N:P ratios,adapts to an arid habitat through increased leaf thickness and thus reduced water loss,reflecting a resource conservation strategy in south Texas.For the two less drought tolerant deciduous species,the variations of leaf traits in C.laevigata and F.americana varied between Q.virginiana and P.glandulosa,reflecting a trade-off between rapid plant growth and nutrient maintenance in a semi-arid environment.

Leaf Traits and Antioxidant Defense for Drought Tolerance During Early Growth Stage in Some Popular Traditional Rice Landraces from Koraput, India

Three popular traditional rice landraces, namely Kalajeera, Machakanta and Haladichudi, from Koraput, India were used to analyse the leaf traits and antioxidant defence for drought tolerance. When rice plants were exposed to different levels of drought stress by varying concentrations of polyethylene glycol （PEG） 6000, seed germination and growth parameters were significantly declined in all the rice landraces compared to the control. Drought stress also altered the leaf phenotypic traits based on chlorophyll fluorescence parameters and chlorophyll index, with more significant differences in susceptible variety IR64 than in traditional landraces. Furthermore, activities of antioxidative enzymes and proline and protein contents overtly increased under drought stress. The traditional rice landraces showed higher relative ratios for different parameters compared to the susceptible variety IR64. Taken together, the traditional landraces had superior leaf physiological efficiency compared to the susceptible and tolerant check varieties under drought stress.

Field identification of morphological and physiological traits in two special mutants with strong tolerance and high sensitivity to drought stress in upland rice(Oryza sativa L.)

The two mutants idr1-1 and 297-28, which were obtained from the radiation mutation of HD297 and IAPAR9, were used as experimental materials in this study for a 2-year(2012 and 2013) experiment about field drought resistance identification in Beijing, China. Key agronomic traits and water-related physiological indexes were observed and measured, including the leaf anti-dead level(LADL), days to heading, plant height, setting percentage, aboveground biomass, leaf water potential(LWP), net photosynthetic rate(Pn) and transpiration rate. The results showed that the mutant idr1-1 that was under drought stress(DS) conditions for 2 years had the highest LADL grades(1.3 and 2.0) among all the materials, and they were 2–3 grades stronger than the wild-type IAPAR9 with an average that was 21.4% higher for the setting percentage than the wild type. Compared with the IAPAR9 for the 2-year average delay in the days to heading and the reduction rates in the plant height, setting percentage, and aboveground biomass under DS compared with the well-watered(WW) treatment, idr1-1 showed 3.2% less delay and 19.1, 16.4, and 6.1% less reduction, respectively. The idr1-1 in the LWP always exhibited the highest performance among all the materials. The Pn of idr1-1 under severe and mild DS comparing with that under WW was slightly decreased and even slightly increased, respectively, leading to an average reduction rate of only 0.92%, which was 26.93% less than that of IAPAR9. Under the severe DS, idr1-1 still showed the highest value of 16.88 μmol CO2 m–2 s–1 among all the materials and was significantly higher than that of IAPAR9(11.66 μmol CO2 m–2 s–1). Furthermore, only idr1-1 had the increased and the highest transpiration rate values(7.6 and 6.04 mmol H2 O m–2 s–1) under both mild and severe DS compared with the values under WW, when the transpiration rate of all the other materials significantly decreased. By contrast, the 297-28 in terms of the LADL grade under DS was the lowest(7.0), and it was four grades weaker than its wildtype HD297 and even one grade weaker than the drought-sensitive paddy rice SN265. For the 2-year average reduction rates in aboveground biomass and plant heights under DS compared with those under the WW, 297-28 was 31.6 and 31.8% higher than HD297, respectively. Meanwhile, 297-28 showed the worst performance for the LWP, Pn, and transpiration rate. These results suggest that idr1-1 might be a superior drought tolerant mutant of upland rice found in China. It has a strong ability to maintain and even enhance leaf transpiration while maintaining a high plant water potential under DS, thus supporting a high Pn and alleviating the delay in agronomic trait development and yield loss effectively. 297-28 is a much more highly drought-sensitive mutant that is even more sensitive than paddy rice varieties. The two mutants could be used as drought tolerance controls for rice germplasm identification and the drought resistant mechanism studies in the future. idr1-1 is also suitable for breeding drought-tolerant and lodging-resistant high-yield rice varieties.

QTL analysis across multiple environments reveals promising chromosome regions associated with yield-related traits in maize under drought conditions

Drought is one of the most critical abiotic stresses influencing maize yield. Improving maize cultivars with drought tolerance using marker-assisted selection requires a better understanding of its genetic basis. In this study, a doubled haploid(DH) population consisting of 217 lines was created by crossing the inbred lines Han 21(drought-tolerant) and Ye 478(drought-sensitive). The population was genotyped with a 6 K SNP assay and 756 SNP(single nucleotide polymorphism) markers were used to construct a linkage map with a length of 1344 c M. Grain yield(GY), ear setting percentage(ESP), and anthesis–silking interval(ASI) were recorded in seven environments under well-watered(WW) and water-stressed(WS) regimes. High phenotypic variation was observed for all traits under both water regimes. Using the LSMEAN(least-squares mean) values from all environments for each trait, 18 QTL were detected, with 9 associated with the WW and 9 with the WS regime. Four chromosome regions,Chr. 3: 219.8–223.7 Mb, Chr. 5: 191.5–194.7 Mb, Chr. 7: 132.2–135.6 Mb, and Chr. 10: 88.2–89.4 Mb, harbored at least 2 QTL in each region, and QTL co-located in a region inherited favorable alleles from the same parent. A set of 64 drought-tolerant BC_3F_6 lines showed preferential accumulation of the favorable alleles in these four regions, supporting an association between the four regions and maize drought tolerance. QTL-by-environment interaction analysis revealed 28 ed QTL(environment-dependent QTL) associated with the WS regime and 22 associated with the WW regime for GY, ESP, and ASI. All WS QTL and55.6% of WW QTL were located in the ed QTL regions. The hotspot genomic regions identified in this work will support further fine mapping and marker-assisted breeding of drought-tolerant maize.

Quantitative trait loci analysis for root traits in synthetic hexaploid wheat under drought stress conditions

Synthetic hexaploid wheat(SHW),possesses numerous genes for drought that can help breeding for drought-tolerant wheat varieties.We evaluated 10 root traits at seedling stage in 111 F9 recombinant inbred lines derived from a F2 population of a SHW line(SHW-L1)and a common wheat line,under normal(NC)and polyethylene glycol-simulated drought stress conditions(DC).We mapped quantitative trait loci(QTLs)for root traits using an enriched high-density genetic map containing 120370 single nucleotide polymorphisms(SNPs),733 diversity arrays technology markers(DArT)and 119 simple sequence repeats(SSRs).With four replicates per treatment,we identified 19 QTLs for root traits under NC and DC,and 12 of them could be consistently detected with three or four replicates.Two novel QTLs for root fresh weight and root diameter under NC explained 9 and 15.7%of the phenotypic variation respectively,and six novel QTLs for root fresh weight,the ratio of root water loss,total root surface area,number of root tips,and number of root forks under DC explained 8.5–14%of the phenotypic variation.Here seven of eight novel QTLs could be consistently detected with more than three replicates.Results provide essential information for fine-mapping QTLs related to drought tolerance that will facilitate breeding drought-tolerant wheat cultivars.

QTL mapping of drought tolerance traits in soybean with SLAF sequencing

Drought stress is an important factor affecting soybean yield.Improving drought tolerance of soybean varieties can increase yield and yield stability when the stress occurs.Identifying QTL related to drought tolerance using molecular marker-assisted selection is able to facilitate the development of drought-tolerant soybean varieties.In this study,we used a high-yielding and drought-sensitive cultivar‘Zhonghuang 35’and a drought-tolerant cultivar‘Jindou 21’to establish F6:9 recombinant inbred lines.We constructed a highdensity genetic map using specific locus amplified fragment sequencing(SLAF-Seq)technology.The genetic map contained 8078 SLAF markers distributing across 20 soybean chromosomes with a total genetic distance of 3780.98 c M and an average genetic distance of0.59 c M between adjacent markers.Two treatments(irrigation and drought)were used in the field tests,the Additive-Inclusive Composite Interval Mapping(ICIM-ADD)was used to call QTL,and plant height and seed weight per plant were used as the indicators of drought tolerance.We identified a total of 23 QTL related to drought tolerance.Among them,seven QTL(q PH2,q PH6,q PH7,q PH17,q PH19-1,q PH19-2,and q PH19-3)on chromosomes 2,6,7,17,and 19 were related to plant height,and five QTL(q SWPP2,q SWPP6,q SWPP13,q SWPP17,and q SWPP19)on chromosomes 2,6,13,17,and 19 were related to seed weight and could be considered as the major QTL.In addition,three common QTL(q PH6/q SWPP6,q PH17/q SWPP17,and q PH19-3/q SWPP19)for both plant height and seed weight per plant were located in the same genomic regions on the same chromosomes.Three(q PH2,q PH17,and q PH19-2)and four novel QTL(q SWPP2,q SWPP13,q SWPP17,and q SWPP19)were identified for plant height and seed weight per plant,respectively.Two pairs of QTL(q PH2/q SWPP2 and q PH17/q SWPP17)were also common for both plant height and seed weight per plant.These QTL and closely linked SLAF markers could be used to accelerate breeding for drought tolerant cultivars via MAS.

Evaluation of Agronomic Traits in Chromosome Segment Substitution Lines of KDML105 Containing Drought Tolerance QTL under Drought Stress

Drought is a major abiotic constraint to rice production in rainfed lowland and insufficiently irrigated areas. The improvement of drought tolerant varieties is one of the strategies to reduce the negative effects of drought. Quantitative trait loci （QTLs） for primary and secondary traits related to drought tolerance （DT） on chromosomes 1, 3, 4, 8 and 9 that determined from double haploid lines derived from a cross between CT9993 and IR62266 were introgressed and dissected into small pieces in the genetic background of Khao Dawk Mall 105 （KDML105） to develop chromosome segment substitution line （CSSL） population. The CSSLs were evaluated at the reproductive stage for their agronomic performance and yield components under drought stress, and results were compared with irrigated condition. The flowering of CSSL lines was 6 to 7 d earlier than KDML105. The mean values of grain yields in the CSSLs were higher than KDML105 under drought and irrigated conditions. At irrigated condition, the grain yields of introgression lines carrying DT-QTLs from chromosomes 4 and 8 were higher than that of KDML105, whereas other traits showed little difference with KDML105. Analysis indicated that grain yield has positive correlation with plant height, tiller and panicle number per plant, and total grain weight per plant under drought stress while negatively correlated with days to flowering. As mentioned above, CSSLs showing good adaptation under drought stress can be used as genetic materials to improve drought tolerance in Thai rainfed lowland rice breeding program, and as materials to dissect genes underlying drought tolerance.

Changes in Germination and Seedling Traits of Sesame under Simulated Drought

Drought is considered one of the leading abiotic constraints to agricultural crop production globally.Present study was conducted to assess the effects of different drought treatments(viz.Control,10%PEG,and 20%PEG)on seed germination,germination indices,seedling traits,and drought tolerance indices of sesame.Our results showed that maximum reduction in the studied parameters was observed at higher PEG concentration(i.e.,20%PEG).As compared to control,the drought treatments viz.10%and 20%PEG decreased the values for germination indices,such as germination percentage,coefficient of variation of germination time,germination index,and seedling vigor index.Similarly,for seedling traits,the values were decreased for root length,shoot length,root shoot ratio,root fresh weight,shoot fresh weight,root dry weight and shoot dry weight under 10%and 20%PEG treatments significantly in comparison with control.Furthermore,relative to control,the values for drought tolerance indices,such as germination drought tolerance index,root length drought tolerance index,shoot length drought tolerance index,total seedling length drought tolerance index,root fresh weight drought tolerance index,shoot fresh weight drought tolerance index,total fresh weight drought tolerance index,root dry weight drought tolerance index,shoot dry weight drought tolerance index and total dry weight drought tolerance index were also reduced under 10%and 20%PEG treatments,respectively.Our results confirms that drought impact on seed germination and seedling traits could be quantified by using different indices which can further help to design drought adaptation and mitigation strategies.Based on these results it can be concluded that germination indices,seedling traits,and drought tolerance indices have great potential to simulate drought stress impacts on different crop traits thus they should be used in all kinds of stress related studies.

Identification of QTLs and candidate genes for physiological traits associated with drought tolerance in cotton

Background:Cotton is mainly grown for its natural fiber and edible oil.The fiber obtained from cotton is the indispensable raw material for the textile industries.The ever changing climatic condition,threatens cotton production due to a lack of sufficient water for its cultivation.Effects of drought stress are estimated to affect more than 50%of the cotton growing regions.To elucidate the drought tolerance phenomenon in cotton,a backcross population was developed from G.tomentosum,a drought tolerant donor parent and G.hirsutum which is highly susceptible to drought stress.Results:A genetic map of 10888 SNP markers was developed from 200 BC_2F_2 populations.The map spanned 4191.3 centi-Morgan(c M),with an average distance of 0.1047 c M,covering 51%and 49%of At and Dt sub genomes,respectively.Thirty stable Quantitative trait loci(QTLs)were detected,in which more than a half were detected in the At subgenome.Eighty-nine candidate genes were mined within the QTL regions for three traits:cell membrane stability(CMS),saturated leaf weight(SLW)and chlorophyll content.The genes had varied physiochemical properties.A majority of the genes were interrupted by introns,and only 15 genes were intronless,accounting for 17%of the mined genes.The genes were found to be involved molecular function(MF),cellular component(CC)and biological process(BP),which are the main gene ontological(GO)functions.A number of mi RNAs were detected,such as mi R164,which is associated with NAC and MYB genes,with a profound role in enhancing drought tolerance in plants.Through RT-q PCR analysis,5 genes were found to be the key genes involved in enhancing drought tolerance in cotton.Wild cotton harbors a number of favorable alleles,which can be exploited to aid in improving the narrow genetic base of the elite cotton cultivars.The detection of 30 stable QTLs and 89 candidate genes found to be contributed by the donor parent,G.tomentosum,showed the significant genes harbored by the wild progenitors which can be exploited in developing more robust cotton genotypes with diverse tolerance levels to various environmental stresses.Conclusion:This was the first study involving genome wide association mapping for drought tolerance traits in semi wild cotton genotypes.It offers an opportunity for future exploration of these genes in developing highly tolerant cotton cultivars to boost cotton production.

The influence of drought stress on malt quality traits of the wild and cultivated barleys

As a major abiotic stress,drought causes instability and deterioration of malt barley quality.There is distinct difference among barley cultivars in the responses of the main malt quality traits to drought stress.In the previous study,we identified some Tibetan wild barley accessions with relatively less change of malt quality traits under drought.In this study,we examined the impact of drought stress during grain filling stage on grain weight and several important malt quality traits,including total protein content,β-glucan content,limit dextrinase activity,β-amylase activity,and protein fractions in four barley genotypes(two Tibetan wild accessions and two cultivars).Drought treatment reduced grain weight,β-glucan content,and increased total protein content,β-amylase activity.These changes differed among barley genotypes and treatments,and are closely associated with grain filling process and kernel weight.All the results indicated Tibetan wild barley had great potential for developing drought tolerant barley cultivars.Relatively stable kernel weight or filling process under water stress should be highlighted in malt barley breeding in order to reduce the effect of water stress on malt barley quality.

Exploration of Genetic Pattern of Phenological Traits in Wheat (Triticum aestivum L.) under Drought Stress

Drought is the major detrimental environmental factor for wheat(Triticum aestivum L.)production.The exploration of genetic patterns underlying drought tolerance is of great significance.Here we report the gene actions controlling the phenological traits using the line×tester model studying 27 crosses and 12 parents under normal irrigation and drought conditions.The results interpreted via multiple analysis(mean performance,correlations,principal component,genetic analysis,heterotic and heterobeltiotic potential)disclosed highly significant differences among germplasm.The phenological waxiness traits(glume,boom,and sheath)were strongly interlinked.Flag leaf area exhibits a positive association with peduncle and spike length under drought.The growing degree days(heat-units)greatly influence spikelets and grains per spike,however,the grain yield/plant was significantly reduced(17.44 g to 13.25 g)under drought.The principal components based on eigenvalue indicated significant PCs(first-seven)accounted for 79.9%and 73.9%of total variability under normal irrigation and drought,respectively.The investigated yield traits showed complex genetic behaviour.The genetic advance confronted a moderate to high heritability for spikelets/spike and grain yield/plant.The traits conditioned by dominant genetic effects in normal irrigation were inversely controlled by additive genetic effects under drought and vice versa.The magnitude of dominance effects for phenological and yield traits,i.e.,leaf twist,auricle hairiness,grain yield/plant,spikelets,and grains/spike suggests that selection by the pedigree method is appropriate for improving these traits under normal irrigation conditions and could serve as an indirect selection index for improving yield-oriented traits in wheat populations for drought tolerance.However,the phenotypic selection could be more than effective for traits conditioned by additive genetic effects under drought.We suggest five significant cross combinations based on heterotic and heterobeltiotic potential of wheat genotypes for improved yield and enhanced biological production of wheat in advanced generations under drought.

Responses of Gardenia jasminoides Ellis Leaf Traits and Anatomical Structures to Drought Stress in Purple Soil

[Objectives]This study was conducted to investigate the response of Gardenia to purple soil drought stress,hoping to provide a reference for the selection of plants for vegetation restoration in purple soil regions.[Methods]The pot-weighing water control method was used to apply different degrees of drought stress to Gardenia seedlings in purple soil,and the effects of drought stress on the electrical conductivity,chlorophyll content,leaf morphology and structure of Gardenia leaves were explored.[Results]The leaf electrical conductivity increased with the increase of drought stress intensity,and the leaf electrical conductivity under severe drought stress increased by 59.93%compared with the control;the chlorophyll content of Gardenia showed a single-peak changing trend that increased and then decreased with the development of drought stress,and it was the highest in each stress stage under severe drought stress;the leaf thickness,palisade tissue thickness and sponge tissue thickness of Gardenia were reduced with the stress degree increasing,and showed the largest decreases under severe stress;the stomatal length,stomatal width and stomatal opening of Gardenia gradually decreased with the increase of stress,while the stomatal density gradually increased.[Conclusions]This study provides a technical and resource basis for vegetation restoration in purple soil.

Quantitative trait loci associated to agronomic traits and yield components in a Sorghum bicolor L.Moench RIL population cultivated under pre-flowering drought and well-watered conditions

The present study aims to identify QTL influencing agronomic traits and yield components under well-watered and pre-flowering drought stress conditions. One hundred F5 recombinant inbred lines (RIL) and the parental lines of a cross between a drought-tolerant and a susceptible line in a field experiment were carried out at Nong Lam University of Ho Chi Minh City, Vietnam. Drought stress was induced by withholding irrigation water from the plants at four weeks after sowing to flowering. Leaf area of the third leaf, stem diameter, plant height, days to heading, anthesis and maturity, panicle length, number of seeds per plant, hundred kernel weight and grain yield were measured. Plants were genotyped with 117 Diversity Arrays Technology (DArT) and eight expressed sequence tag (EST)-derived simple sequence repeat (SSR) markers. Composite interval mapping was carried out on the traits and significant QTL were claimed at a logarithm of the odds (LOD) score >2.5. A total of 50 QTL were detected on nine chromosomes or 13 linkage groups, respectively. Six promising QTL regions with seven QTL for yield and agronomic traits especially related to pre-flowering drought tolerance were identified on chromosomes SBI-01, SBI-03, SBI-04, SBI-05 and SBI-07.

Genetic analysis and candidate gene identification of salt tolerancerelated traits in maize

Soil salinization poses a threat to maize production worldwide,but the genetic mechanism of salt tolerance in maize is not well understood.Therefore,identifying the genetic components underlying salt tolerance in maize is of great importance.In the current study,a teosinte-maize BC2F7 population was used to investigate the genetic basis of 21 salt tolerance-related traits.In total,125 QTLs were detected using a high-density genetic bin map,with one to five QTLs explaining 6.05–32.02%of the phenotypic variation for each trait.The total phenotypic variation explained(PVE)by all detected QTLs ranged from 6.84 to 63.88%for each trait.Of all 125 QTLs,only three were major QTLs distributed in two genomic regions on chromosome 6,which were involved in three salt tolerance-related traits.In addition,10 pairs of epistatic QTLs with additive effects were detected for eight traits,explaining 0.9 to 4.44%of the phenotypic variation.Furthermore,18 QTL hotspots affecting 3–7 traits were identified.In one hotspot(L5),a gene cluster consisting of four genes(ZmNSA1,SAG6,ZmCLCg,and ZmHKT1;2)was found,suggesting the involvement of multiple pleiotropic genes.Finally,two important candidate genes,Zm00001d002090 and Zm00001d002391,were found to be associated with salt tolerance-related traits by a combination of linkage and marker-trait association analyses.Zm00001d002090 encodes a calcium-dependent lipid-binding(CaLB domain)family protein,which may function as a Ca^(2+)sensor for transmitting the salt stress signal downstream,while Zm00001d002391 encodes a ubiquitin-specific protease belonging to the C19-related subfamily.Our findings provide valuable insights into the genetic basis of salt tolerance-related traits in maize and a theoretical foundation for breeders to develop enhanced salt-tolerant maize varieties.

Physiological Response Mechanism and Drought Resistance Evaluation of Passiflora edulis Sims under Drought Stress

In order to explore the response mechanism of Passiflora edulis Sims to drought stress,the changes in morpho-logical and physiological traits of Passiflora edulis Sims under different drought conditions were studied.A total of 7 germplasm resources of Passiflora edulis Sims were selected and tested under drought stress by the pot culture method under 4 treatment levels:75%–80%(Control,CK)of maximumfield water capacity,55%–60%(Light Drought,LD)of maximumfield water capacity,i.e.,mild drought,40%–45%(Moderate Drought,MD)of max-imumfield water capacity,i.e.,moderate drought and 30%–35%(Severe Drought,SD)of maximumfield water capacity,i.e.,severe drought.On the 40th day of drought treatment,13 indices,including seedling growth mor-phology,physiology,and biochemistry,were measured.The results showed that under drought stress,the height and ground diameter of P.edulis Sims gradually decreased with increasing drought stress,and there were signifi-cant differences in seedling height and ground diameter among the treatments.Drought stress significantly inhib-ited the growth of seven P.edulis Sims varieties.The contents of soluble sugar(SS),soluble protein(SP),proline(Pro),and other substances in P.edulis Sims basically increased with increasing drought stress.With the aggrava-tion of drought stress,the malondialdehyde(MDA)content of P.edulis Sims tended to increase to different degrees,the superoxide dismutase(SOD)activity and peroxidase(POD)activity both tended to increase atfirst and then decrease,and the change in catalase(CAT)activity mostly showed a gradual increasing trend.The con-tents of endogenous hormones in P.edulis Sims significantly differed under different degrees of drought stress.With the aggravation of drought stress,the abscisic acid(ABA)content of P.edulis Sims tended to increase,whereas the contents of gibberellin(GA),indoleacetic acid(IAA),and zeatin nucleoside(ZR)exhibited a down-ward trend.A comprehensive evaluation of the drought resistance of seven P.edulis Sims varieties was conducted based on the principal component analysis method,and the results showed that the drought resistance decreased in the order XH-BL>XH-TWZ>TN1>GH1>ZJ-MT>LP-LZ>DH-JW.

Assessment of molecular markers and marker-assisted selection for drought tolerance in barley(Hordeum vulgare L.)

This review updates the present status of the field of molecular markers and marker-assisted selection(MAS),using the example of drought tolerance in barley.The accuracy of selected quantitative trait loci(QTLs),candidate genes and suggested markers was assessed in the barley genome cv.Morex.Six common strategies are described for molecular marker development,candidate gene identification and verification,and their possible applications in MAS to improve the grain yield and yield components in barley under drought stress.These strategies are based on the following five principles:(1)Molecular markers are designated as genomic‘tags’,and their‘prediction’is strongly dependent on their distance from a candidate gene on genetic or physical maps;(2)plants react differently under favourable and stressful conditions or depending on their stage of development;(3)each candidate gene must be verified by confirming its expression in the relevant conditions,e.g.,drought;(4)the molecular marker identified must be validated for MAS for tolerance to drought stress and improved grain yield;and(5)the small number of molecular markers realized for MAS in breeding,from among the many studies targeting candidate genes,can be explained by the complex nature of drought stress,and multiple stress-responsive genes in each barley genotype that are expressed differentially depending on many other factors.

QTL Mapping for Drought Tolerance at Stages of Germination and Seedling in Wheat (Triticum aestivum L.) Using a DH Population

Drought is a major constraint in many wheat( Triticum aestivum L.) production regions. Quantitative trait loci (QTLs) conditioning drought tolerance at stages of germination and seedling in wheat were identified in a double haploid (DH) population derived from the cross, Hanxuan10×Lumai14, using amplified fragment length polymorphism (AFLP) and simple sequence repeat (SSR) markers. Interval mapping analysis revealed that QTLs for drought tolerance at germination stage were located on chromosomes 1B, 2B, 5A, 6B, 7A and 7B, respectively, and the most effective QTL was mapped on chromosome 2B, explaining 27.2% of phenotypic variance. The QTLs for drought tolerance at seedling stage were located on 1B, 3B and 7B, respectively, and the most effective QTL was mapped on chromosome 3B, explaining 21.6% of phenotypic variance. Their positions were different from those of QTLs conferring drought tolerance at germination stage, indicating that drought tolerance at germination stage and seedling stage was controlled by different loci. Most of the identified QTLs explained 18% or more of phenotypic variance for drought tolerance at germination and seedling stage, and would be useful in future for marker assisted selection programs and cultivar improvement.