Food waste(FW)has been recognized as essential reservoir for resource recovery via anaerobic fermentation,which could also bring the potential risk of antibiotic resistance genes(ARGs)dissemination.Although the struct...Food waste(FW)has been recognized as essential reservoir for resource recovery via anaerobic fermentation,which could also bring the potential risk of antibiotic resistance genes(ARGs)dissemination.Although the structural deficiency of FW could be stimulated by enzymatic pretreatment to enhance fermentation efficiency,the influences of enzymatic pretreatment on ARGs fate and microbial metabolic pathways involved in ARGs dissemination have rarely been reported.This work proved that enzymatic pretreatment could effectively decrease the total abundance of ARGs(reduced by 13.8%-24.5%)during long-term FW fermentation.It was found that enzymatic pretreatment significantly reduced the ARGs belonging to the efflux pump,which might be ascribed to its ability to increase membrane permeability.Furthermore,enzymatic pretreatment was in favor of reducing microbial diversity and various potential ARGs host(e.g.,Methanosarcina,Clostridium,Prevotella,Parabacteroides).Also,this pretreatment remarkably up-regulated the genetic expressions involved in ABC transporter(e.g.,eryF and mntA)and down-regulated the genetic expressions that participated in DNA replication,two-component systems(e.g.,uphA and cckA),and quorum sensing(e.g.,rpfF and lsrG),thereby decreasing ARGs transmission.This study would expand the insight of the influences of pretreatment method on ARGs fate during FW fermentation,and offer practical guidance on the sustainable management of FW.展开更多
Effective monitoring and management of microbial risk factors in wastewater treatment plants(WWTPs)effluents require a comprehensive investigation of these risks.A global survey on microbial risk factors in WWTP efflu...Effective monitoring and management of microbial risk factors in wastewater treatment plants(WWTPs)effluents require a comprehensive investigation of these risks.A global survey on microbial risk factors in WWTP effluents could reveal important insights into their risk features.This study aims to explore the abundance and types of antibiotic resistance genes(ARGs),virulence factor genes(VFGs),the vector of ARG/VFG,and dominant pathogens in global WWTP effluents.We collected 113 metagenomes of WWTP effluents from the Sequence Read Archive of the National Center for Biotechnology Information and characterized the microbial risk factors.Our results showed that multidrug resistance was the dominant ARG type,while offensive virulence factors were the most abundant type of VFGs.The most dominant types of ARGs in the vector of plasmid and phage were both aminoglycoside resistance,which is concerning as aminoglycosides are often a last resort for treating multi-resistant infections.Acinetobacter baumannii was the most dominant pathogen,rather than Escherichia coli,and a weak negative correlation between Escherichia coli and two other dominant pathogens(Acinetobacter baumannii and Bacteroides uniformis)suggests that using Escherichia coli as a biological indicator for all pathogens in WWTP effluents may not be appropriate.The Getah virus was the most dominant virus found in global WWTP effluents.Our study presents a comprehensive global-scale investigation of microbial risk factors in WWTP effluents,providing valuable insights into the potential risks associated with WWTP effluents and contributing to the monitoring and control of these risks.展开更多
The role of norfloxacin(NOR)and sulfamethoxazole(SMX)in mesophilic and thermophilic anaerobic digestion(AD)of pig manure,with respect to methane production and variations in the microbial community and resistance gene...The role of norfloxacin(NOR)and sulfamethoxazole(SMX)in mesophilic and thermophilic anaerobic digestion(AD)of pig manure,with respect to methane production and variations in the microbial community and resistance genes,including antibiotic resistance genes(ARGs),class I integrase(intIl),and heavy metal resistance genes(MRGs),was investigated.The results indicated that NOR exerted little influence on the microbial community,whereas SMX negatively affected the acetoclastic methanogens.The abundance of two sulfonamide resistance genes(sul1 and sul2),three quinolone resistance genes(qnrS,parC,and aac(6′)-Ib-cr),and intI1 decreased by 2–3 orders of magnitude at the end of thermophilic AD.In contrast,mesophilic AD was generally ineffective in reducing the abundance of resistance genes.According to the results of redundancy analysis,the abundance of ARGs was affected primarily by microbial community dynamics(68.5%),rather than the selective pressure due to antibiotic addition(13.3%).Horizontal gene transfer(HGT)through intI1 contributed to 26.4%of the ARG variation.The archaeal community also influenced the changes in the resistance genes,and ARG reduction was significantly correlated with enhanced methane production.Thermophilic AD presented a higher methane production potential and greater reduction in resistance gene abundance.展开更多
The relatively low sensitivity is an important reason for restricting the microbial fuel cell(MFC)sensors'application in low concentration biodegradable organic matter(BOM)detection.The startup parameters,includin...The relatively low sensitivity is an important reason for restricting the microbial fuel cell(MFC)sensors'application in low concentration biodegradable organic matter(BOM)detection.The startup parameters,including substrate concentration,anode area and external resistance,were regulated to enhance the sensitivity of MFC sensors.The results demonstrated that both the substrate concentration and anode area were positively correlated with the sensitivity of MFC sensors,and an external resistance of 210Ωwas found to be optimal in terms of sensitivity of MFC sensors.Optimized MFC sensors had lower detection limit(1 mg/L)and higher sensitivity(Slope value of the linear regression curve was 1.02),which effectively overcome the limitation of low concentration BOM detection.The essential reason is that optimized MFC sensors had higher coulombic efficiency,which was beneficial to improve the sensitivity of MFC sensors.The main impact of the substrate concentration and anode area was to regulate the proportion between electrogens and nonelectrogens,biomass and living cells of the anode biofilm.The external resistance mainly affected the morphology structure and the proportion of living cells of the anode.This study demonstrated an effective way to improve the sensitivity of MFC sensors for low concentration BOM detection.展开更多
Uncontrolled uses of antibiotics have led to rapid evolution of antibiotic-resistance bacteria and antibiotic resistance gene transfer, especially in a pool of aquatic system where resistance, intermediate and suscept...Uncontrolled uses of antibiotics have led to rapid evolution of antibiotic-resistance bacteria and antibiotic resistance gene transfer, especially in a pool of aquatic system where resistance, intermediate and susceptible bacteria to some antibiotics strive together. Consequently, there is a transfer of resistance genes. In this study, bacteria of the Enterobacteriaceae family and some gram positive bacteria isolated from some boreholes and hand dug wells water of public use were tested on 19 antibiotics of different classes. This was achieved through a disk diffusion technique to determine the antimicrobial resistance profile of the said bacteria, microbial resistance index of the drugs used (and their ability to produce Beta-lactamase). These isolates were shown to demonstrate a very high resistance to the drugs used in the area. The resistance was highest in Escherichia coli 1 (73.68%) and lowest in Streptococcus pneumoniae (47.82%). These isolates also indicated very high levels of multi-drug resistance. The minimum resistance index was 0.47, indicating that bacteria isolates were of fecal origin. It is evident from the present study that multiple antibiotic-resistant bacteria can thrive in water as an environmental reservoir, and can therefore provide a route to multidrug-resistant pathogens to enter human and animal population.展开更多
Antibiotic resistance genes(ARGs)are an emerging issue for drinkingwater safety.However,the seasonal variation of ARGs in drinking water distribution systems(DWDS)is still unclear.This work revealed the tempo-spatial ...Antibiotic resistance genes(ARGs)are an emerging issue for drinkingwater safety.However,the seasonal variation of ARGs in drinking water distribution systems(DWDS)is still unclear.This work revealed the tempo-spatial changes of microbial community,ARGs,mobile genetic elements(MGEs)co-occurring with ARGs,ARG hosts in DWDS bulk water by means of metagenome assembly.The microbial community and antibiotic resistome varied with sampling season and site.Temperature,ammonia,chlorite and total plate count(TPC)drove the variations of microbial community structure.Moreover,environmental parameters(total organic carbon(TOC),chlorite,TPC and hardness)shifted antibiotic resistome.ARGs and MGEs co-occurring with ARGs showed higher relative abundance in summer and autumn,which might be attributed to detached pipe biofilm.In particular,ARG-bacitracin and plasmid were the predominant ARG and MGE,respectively.ARG hosts changed with season and site and were more diverse in summer and autumn.In winter and spring,Limnohabitans and Mycobacterium were the major ARG hosts as well as the dominant genera in microbial community.In addition,in summer and autumn,high relative abundance of Achromobacter and Stenotrophomonas were the hosts harboring many kinds of ARGs and MGEs at site in a residential zone(0.4 km from the water treatment plant).Compared with MGEs,microbial community had a greater contribution to the variation of antibiotic resistome.This work gives new insights into the dynamics of ARGs in full-scale DWDS and the underlying factors.展开更多
耐药结核病是2035年实现全球终结结核病流行目标的巨大障碍。世界卫生组织(World Health Organization,WHO)倡导采用快速分子药物敏感性检测技术进行耐药结核病早期诊断,而覆盖全面可靠的耐药检测靶标是提高分子药物敏感性检测技术可靠...耐药结核病是2035年实现全球终结结核病流行目标的巨大障碍。世界卫生组织(World Health Organization,WHO)倡导采用快速分子药物敏感性检测技术进行耐药结核病早期诊断,而覆盖全面可靠的耐药检测靶标是提高分子药物敏感性检测技术可靠性的关键。WHO于2023年11月发布《结核分枝杆菌耐药相关基因突变目录(第2版)》,目的是基于更广泛的全球数据汇总形成更为全面准确的耐药相关基因突变目录,为开发与完善基于测序或其他方法的新型分子药物敏感性检测技术提供支持。本文对第2版目录相较于第1版目录在分析流程与耐药突变等内容的更新进行了详细的解读,并对未来目录完善的方向进行了展望。展开更多
基金This work was financially supported by the National Key Research and Development Program of China(No.2019YFC1906302)the Shanghai Natural Science Foundation(No.22ZR1466900)the China Postdoctoral Science Foundation(No.2021M692423).
文摘Food waste(FW)has been recognized as essential reservoir for resource recovery via anaerobic fermentation,which could also bring the potential risk of antibiotic resistance genes(ARGs)dissemination.Although the structural deficiency of FW could be stimulated by enzymatic pretreatment to enhance fermentation efficiency,the influences of enzymatic pretreatment on ARGs fate and microbial metabolic pathways involved in ARGs dissemination have rarely been reported.This work proved that enzymatic pretreatment could effectively decrease the total abundance of ARGs(reduced by 13.8%-24.5%)during long-term FW fermentation.It was found that enzymatic pretreatment significantly reduced the ARGs belonging to the efflux pump,which might be ascribed to its ability to increase membrane permeability.Furthermore,enzymatic pretreatment was in favor of reducing microbial diversity and various potential ARGs host(e.g.,Methanosarcina,Clostridium,Prevotella,Parabacteroides).Also,this pretreatment remarkably up-regulated the genetic expressions involved in ABC transporter(e.g.,eryF and mntA)and down-regulated the genetic expressions that participated in DNA replication,two-component systems(e.g.,uphA and cckA),and quorum sensing(e.g.,rpfF and lsrG),thereby decreasing ARGs transmission.This study would expand the insight of the influences of pretreatment method on ARGs fate during FW fermentation,and offer practical guidance on the sustainable management of FW.
基金supported by the National Natural Science Foundation of China(Nos.52170156,52250056,and 52293442)the Shenzhen Science and Technology Program(No.KQTD20190929172630447)。
文摘Effective monitoring and management of microbial risk factors in wastewater treatment plants(WWTPs)effluents require a comprehensive investigation of these risks.A global survey on microbial risk factors in WWTP effluents could reveal important insights into their risk features.This study aims to explore the abundance and types of antibiotic resistance genes(ARGs),virulence factor genes(VFGs),the vector of ARG/VFG,and dominant pathogens in global WWTP effluents.We collected 113 metagenomes of WWTP effluents from the Sequence Read Archive of the National Center for Biotechnology Information and characterized the microbial risk factors.Our results showed that multidrug resistance was the dominant ARG type,while offensive virulence factors were the most abundant type of VFGs.The most dominant types of ARGs in the vector of plasmid and phage were both aminoglycoside resistance,which is concerning as aminoglycosides are often a last resort for treating multi-resistant infections.Acinetobacter baumannii was the most dominant pathogen,rather than Escherichia coli,and a weak negative correlation between Escherichia coli and two other dominant pathogens(Acinetobacter baumannii and Bacteroides uniformis)suggests that using Escherichia coli as a biological indicator for all pathogens in WWTP effluents may not be appropriate.The Getah virus was the most dominant virus found in global WWTP effluents.Our study presents a comprehensive global-scale investigation of microbial risk factors in WWTP effluents,providing valuable insights into the potential risks associated with WWTP effluents and contributing to the monitoring and control of these risks.
基金the National Natural Science Foundation of China(Grant No.51878214)the National Key Research and Development Program of China(No.2019YFD1100200).
文摘The role of norfloxacin(NOR)and sulfamethoxazole(SMX)in mesophilic and thermophilic anaerobic digestion(AD)of pig manure,with respect to methane production and variations in the microbial community and resistance genes,including antibiotic resistance genes(ARGs),class I integrase(intIl),and heavy metal resistance genes(MRGs),was investigated.The results indicated that NOR exerted little influence on the microbial community,whereas SMX negatively affected the acetoclastic methanogens.The abundance of two sulfonamide resistance genes(sul1 and sul2),three quinolone resistance genes(qnrS,parC,and aac(6′)-Ib-cr),and intI1 decreased by 2–3 orders of magnitude at the end of thermophilic AD.In contrast,mesophilic AD was generally ineffective in reducing the abundance of resistance genes.According to the results of redundancy analysis,the abundance of ARGs was affected primarily by microbial community dynamics(68.5%),rather than the selective pressure due to antibiotic addition(13.3%).Horizontal gene transfer(HGT)through intI1 contributed to 26.4%of the ARG variation.The archaeal community also influenced the changes in the resistance genes,and ARG reduction was significantly correlated with enhanced methane production.Thermophilic AD presented a higher methane production potential and greater reduction in resistance gene abundance.
基金supported by the National Natural Science Foundation of China(Nos.51525805,51727812 and 51808527)the Soft Science Research Project of Sichuan(No.2019JDR0286)the Special Research Assistant Program of Chinese Academy of Science。
文摘The relatively low sensitivity is an important reason for restricting the microbial fuel cell(MFC)sensors'application in low concentration biodegradable organic matter(BOM)detection.The startup parameters,including substrate concentration,anode area and external resistance,were regulated to enhance the sensitivity of MFC sensors.The results demonstrated that both the substrate concentration and anode area were positively correlated with the sensitivity of MFC sensors,and an external resistance of 210Ωwas found to be optimal in terms of sensitivity of MFC sensors.Optimized MFC sensors had lower detection limit(1 mg/L)and higher sensitivity(Slope value of the linear regression curve was 1.02),which effectively overcome the limitation of low concentration BOM detection.The essential reason is that optimized MFC sensors had higher coulombic efficiency,which was beneficial to improve the sensitivity of MFC sensors.The main impact of the substrate concentration and anode area was to regulate the proportion between electrogens and nonelectrogens,biomass and living cells of the anode biofilm.The external resistance mainly affected the morphology structure and the proportion of living cells of the anode.This study demonstrated an effective way to improve the sensitivity of MFC sensors for low concentration BOM detection.
文摘Uncontrolled uses of antibiotics have led to rapid evolution of antibiotic-resistance bacteria and antibiotic resistance gene transfer, especially in a pool of aquatic system where resistance, intermediate and susceptible bacteria to some antibiotics strive together. Consequently, there is a transfer of resistance genes. In this study, bacteria of the Enterobacteriaceae family and some gram positive bacteria isolated from some boreholes and hand dug wells water of public use were tested on 19 antibiotics of different classes. This was achieved through a disk diffusion technique to determine the antimicrobial resistance profile of the said bacteria, microbial resistance index of the drugs used (and their ability to produce Beta-lactamase). These isolates were shown to demonstrate a very high resistance to the drugs used in the area. The resistance was highest in Escherichia coli 1 (73.68%) and lowest in Streptococcus pneumoniae (47.82%). These isolates also indicated very high levels of multi-drug resistance. The minimum resistance index was 0.47, indicating that bacteria isolates were of fecal origin. It is evident from the present study that multiple antibiotic-resistant bacteria can thrive in water as an environmental reservoir, and can therefore provide a route to multidrug-resistant pathogens to enter human and animal population.
基金supported by the National Key R&D Program of China(No.2019YFC0408700).
文摘Antibiotic resistance genes(ARGs)are an emerging issue for drinkingwater safety.However,the seasonal variation of ARGs in drinking water distribution systems(DWDS)is still unclear.This work revealed the tempo-spatial changes of microbial community,ARGs,mobile genetic elements(MGEs)co-occurring with ARGs,ARG hosts in DWDS bulk water by means of metagenome assembly.The microbial community and antibiotic resistome varied with sampling season and site.Temperature,ammonia,chlorite and total plate count(TPC)drove the variations of microbial community structure.Moreover,environmental parameters(total organic carbon(TOC),chlorite,TPC and hardness)shifted antibiotic resistome.ARGs and MGEs co-occurring with ARGs showed higher relative abundance in summer and autumn,which might be attributed to detached pipe biofilm.In particular,ARG-bacitracin and plasmid were the predominant ARG and MGE,respectively.ARG hosts changed with season and site and were more diverse in summer and autumn.In winter and spring,Limnohabitans and Mycobacterium were the major ARG hosts as well as the dominant genera in microbial community.In addition,in summer and autumn,high relative abundance of Achromobacter and Stenotrophomonas were the hosts harboring many kinds of ARGs and MGEs at site in a residential zone(0.4 km from the water treatment plant).Compared with MGEs,microbial community had a greater contribution to the variation of antibiotic resistome.This work gives new insights into the dynamics of ARGs in full-scale DWDS and the underlying factors.
文摘耐药结核病是2035年实现全球终结结核病流行目标的巨大障碍。世界卫生组织(World Health Organization,WHO)倡导采用快速分子药物敏感性检测技术进行耐药结核病早期诊断,而覆盖全面可靠的耐药检测靶标是提高分子药物敏感性检测技术可靠性的关键。WHO于2023年11月发布《结核分枝杆菌耐药相关基因突变目录(第2版)》,目的是基于更广泛的全球数据汇总形成更为全面准确的耐药相关基因突变目录,为开发与完善基于测序或其他方法的新型分子药物敏感性检测技术提供支持。本文对第2版目录相较于第1版目录在分析流程与耐药突变等内容的更新进行了详细的解读,并对未来目录完善的方向进行了展望。