Assessing the conservation impact of Chinese indigenous chicken populations between ex-situ and in-situ using genome-wide SNPs

Conservation programs require rigorous evaluation to ensure the preservation of genetic diversity and viability of conservation populations. In this study, we conducted a comparative analysis of two indigenous Chinese chicken breeds, Gushi and Xichuan black-bone, using whole-genome SNPs to understand their genetic diversity, track changes over time and population structure. The breeds were divided into five conservation populations(GS1, 2010, ex-situ;GS2, 2019, ex-situ;GS3, 2019, in-situ;XB1, 2010, in-situ;and XB2, 2019, in-situ) based on conservation methods and generations. The genetic diversity indices of three conservation populations of Gushi chicken showed consistent trends, with the GS3 population under in-situ strategy having the highest diversity and GS2 under ex-situ strategy having the lowest. The degree of inbreeding of GS2 was higher than that of GS1 and GS3. Conserved populations of Xichuan black-bone chicken showed no obvious changes in genetic diversity between XB1 and XB2. In terms of population structure, the GS3 population were stratified relative to GS1 and GS2. According to the conservation priority, GS3 had the highest contribution to the total gene and allelic diversity in GS breed, whereas the contribution of XB1 and XB2 were similar. We also observed that the genetic diversity of GS2 was lower than GS3, which were from the same generation but under different conservation programs(in-situ and ex-situ). While XB1 and XB2 had similar levels of genetic diversity. Overall, our findings suggested that the conservation programs performed in ex-situ could slow down the occurrence of inbreeding events, but could not entirely prevent the loss of genetic diversity when the conserved population size was small, while in-situ conservation populations with large population size could maintain a relative high level of genetic diversity.

POPULATION AND CONSERVATION OF BLACK CRESTED GIBBONS ( Hylobates concolor jingdongensis ) IN WULIANG NATURE RESERVE,JINGDONG,YUNNAN

Population estimates of black crested gibbons in Wuliang Nature Reserve,Jingdong,Yunnan,China,with two techniques,average group density total area and average home rang forest coverage,produced quite similar results.The population was estimated around 115 groups in the Reserve.The paper also discussed the conservation problems of the Reserve.At present,the main threat to the gibbons is habitat fragmentation and population isolation.Thus,it is urgent to prohibit hunting and protect the habitat and forest corridors or habitat bridges.

Population and conservation status of the Himalayan Griffon(Gyps himalayensis) at the Drigung Thel Monastery,Tibet,China

The Himalayan Griffon(Gyps himalayensis), occurring mainly in the Tibetan Plateau, is one of the scavengers of Old World vultures. As of now, knowledge about the Himalayan Griffon in China remains scarce. Estimates of its number, habitat, and conservation status were carried out in 2003, 2009 and 2102 in the Lhasa River Valley, where we paid particular attention to the population living at the Drigung Thel Monastery, Mzizhokunggar County. The resident species occupies alpine meadows in the daytime and roosts at the upper parts of cliffs at night between 4400–5000 m elevation. The number of individual birds of the Himalayan Griffon around the monastery was estimated as 230 in 2003, 250 in 2009 and 200 in 2012. This population is considered relatively stable, thanks to the current conservation measures by Buddhist monks and local people. Given the lack of any baseline information, it is difficult for us to recommend and provide any effective conservation measures.

Emei Shan Liocichla: population, behavior and conservation

Endemic to China, the Emei Shan Liocichla(Liocichla omeiensis) is considered globally vulnerable by the IUCN because of its small, declining population and fragmented range. The species has been recorded in only a few mountainous forests in south-central Sichuan and in the extreme northeast of Yunnan Province. We summarized the basic eco-biology information on its habitat,breeding, winter habits and behavior, voice, population status, research and conservation.

Status of the Xinjiang Ground Jay:population,breeding ecology and conservation

The Xinjiang Ground Jay (Podoces biddulphi) is a bird species endemic to China. It has a restricted range, living only in the Taklimakan Desert, southern part of Xinjiang. So far, little information has been known of the status and ecology of the bird in the world. Since 1988, I have been taking field investigations on the distribution, population size and breeding ecology of the Xinjiang Ground Jay in the desert.In this thesis, the desertification in relation to the eastward expansion of the ground jays was discussed.

Conservation implications of population genetic structure in a threatened orchid Cypripedium tibeticum

Cypripedium tibeticum is a threatened orchid which efficient conservation requires knowledge of its extent and structure of genetic variation. Using two chloroplast DNA fragments(rps16 and trnL-F), we analyzed 157 individuals from 9 populations representing the species range in China. Seven haplotypes were identified. C. tibeticum had high total genetic diversity(H_T=0.80) with major contribution to this diversity made by among-population component(G_ST=0.64, Ф_ST= 0.86). However, despite high population differentiation there was no clear phylogeographic structure. The populations CY and DC made the greatest contribution to the total gene diversity as well as allelic richness. The possible mechanisms and implications of these findings for conservation of the species are discussed.

Population trends, threats, and conservation recommendations for waterbirds in China

Background: China is one of the countries with abundant waterbird diversity. Over the past decades, China's waterbirds have suffered increasing threats from direct and indirect human activities. It is important to clarify the population trends of and threats to waterbirds as well as to put forward conservation recommendations.Methods: We collected data of population trends of a total of 260 waterbird species in China from Wetlands International database. We calculated the number of species with increasing, declining, stable, and unknown trends. We collected threatened levels of waterbirds from the Red List of China's Vertebrates(2016), which was compiled according to the IUCN criteria of threatened species. Based on literature review, we refined the major threats to the threatened waterbird species in China.Results: Of the total 260 waterbird species in China, 84 species(32.3%) exhibited declining, 35 species(13.5%) kept stable, and 16 species(6.2%) showed increasing trends. Population trends were unknown for 125 species(48.1%). There was no significant difference in population trends between the migratory(32.4% decline) and resident(31.8% decline) species or among waterbirds distributed exclusively along coasts(28.6% decline), inland(36.6% decline), and both coasts and inland(32.5% decline). A total of 38 species(15.1% of the total) were listed as threatened species and 27 species(10.8% of the total) Near Threatened species. Habitat loss was the major threat to waterbirds, with 32 of the total 38(84.2%) threatened species being affected. In addition, 73.7%(28 species), 71.1%(27 species), and 57.9%(22 species) of the threatened species were affected by human disturbance, environmental pollution, and illegal hunting, respectively.Conclusions: We propose recommendations for waterbird conservation, including(1) strengthening conservation of nature wetlands and restoration of degraded wetlands,(2) enhancing public awareness on waterbird conservation,(3) improving the enforcement of Wildlife Protection Law and cracking down on illegal hunting,(4) carrying out longterm waterbird surveys to clarify population dynamics,(5) restoring populations of highly-threatened species through artificial intervention, and(6) promoting international and regional exchanges and cooperation to share information in waterbirds and their conservation.

Conservation genetics of a resident population of Greylag Goose(Anser anser) at the southernmost limit of the species' distribution in Europe

Background:Conservation of small and isolated populations can be challenging since they are prone to loss of genetic diversity due to random genetic drift and inbreeding.Therefore,information from the assessment of genetic diversity and structure are needed for conservation programs to determine the appropriate management strategy for the populations.We investigated the levels of genetic variability in a resident Greylag Goose(Anser anser) population,the southernmost breeding population of the species in Europe and the sole viable population of any goose species in Greece.Methods:A fragment of mtDNA Control Region and a panel of 11 microsatellite markers were used to search for any signs of genetic impoverishment and population substructure and to reveal the underlying processes through the identification of possible past demographic events.Results:The population was found to be monomorphic in the amplified fragment of the mitochondrial Control Region,with all individuals sharing a single private haplotype.Analyses showed a lack of any population substructure indicating a panmictic population.Although the population seems to have experienced a strong and recent genetic bottleneck and exhibits a small effective population size,we did not find evidence of either extremely low levels of genetic diversity or inbreeding depression.Conclusions:The recent demographic decline we detected and the combined influence of residency and anthropogenic factors have probably shaped the current genetic status.Our study population does not need emergency conservation actions but should be regarded as a discrete management unit.Future management strategies should focus on population and genetic monitoring and preventing further abundance declines that would increase the risk of genetic impoverishment.

Global population estimate and conservation gap analysis for the Nordmann's Greenshank(Tringa guttifer)

Nordmann's Greenshank(Tringa guttifer)is a globally endangered species that has received little research attention.It is threatened by rapid habitat loss,an incomplete network of protected sites,and lack of long-term data on population dynamics.Citizen science data can be combined with survey data to support population estimation and conservation gap analysis.From 2020 to 2021,Nordmann's Greenshank was surveyed in Tiaozini,Xiaoyangkou,and Dongling on the southern coast of Jiangsu Province,China,and the global population of the species was re-evaluated using the data obtained.We integrated citizen science data from eBird and the China Bird Report from 2000 to 2020 with the survey results to identify important habitats harboring over 1%of its total population,and compared this data with existing protected areas to identify gaps in its global conservation.Our survey found that Tiaozini supported at least 1194 individuals.Consequently,its global population was reestimated to be 1500-2000.Moreover,45 important habitats were identified based on citizen data and survey results.Although 44.4%and 50.0%of the priority sites in the world and China,respectively,are located outside protected areas,the Conservation Effectiveness Index(C)is 68.4%and 71.1%,respectively,showing that the current coverage of protected areas for this part of its range is reasonable.This study presents the most complete and recent population data to date.Tiaozini is the most important migration stopover site for Nordmann's Greenshanks.The species is under threat in terms of breeding,wintering,and stopover sites.Therefore,we suggest improving monitoring,establishing new protected sites to complete the habitat protection network,and improving the effectiveness of existing habitat protection strategies,including further developing high tide roosting sites.

Population Status, Threats and Conservation of the Spotted Pond Turtle;Geoclemys Hamiltonii (Gray, 1830) (Geoemydidae) of Pakistan

In the present work on population status,threats and conservation of the spotted pond turtle;Geoclemys hamiltonii(Gray,1830)(Geoemydidae)was conducted in Thatta,Sujawal and Badin districts of Sindh province of Pakistan.A total number of 277 live specimens of G.hamiltonii from southeast province(Sindh)of Pakistan have been collected from different water bodies and sites in three consecutive year’s i.e 2015-2017.The population status of G.hamiltonii has recorded as decreasing in Sindh due to habitat destruction,eutrophication,agricultural farming and some other anthropogenic activities.This species is mostly used as pet and the poachers mostly carrying this species for trade in East Asian countries.The globally illegal trading hubs of this species are Bangkok,Taiwan and Hong Kong.More and powerful actions and efforts are needed to raise awareness of smuggling of wildlife,with a specific need of formal memorandums of understanding(MOUs)are strongly encouraged south Asian and east Asian countries to control illegal trade between the countries and territories along the trade route of Bangladesh,India,Pakistan,Thailand,Hong Kong and Taiwan to improve cross border enforcement.

Bamboo resources,utilization and ex-situ conservation in Xishuangbanna,South-eastern China

This paper describes the geographical distribution, utilization, cultural value and ex-situ conservation of bamboo resources in Xishuangbanna, Yunan Province, China. Sixty species of bamboo in 19 genera are recorded in Xishuangbanna. The area of natural bamboo forest is 14319 ha, accounting for 5.92% of whole area of Xishuangbanna. The abundant resource of bamboo plays an important role in the economics and culture of national minorities in Xishuangbanna. Xishuangbanna Tropic Botanic Garden, Chinese Academy of Sciences （CAS）, started to introduce bamboo species in 1961 and established the ex-situ conservation reserve （8 ha） of bamboo in 1981. Up to now, 211 species in 27 genera collected from tropic and sub-tropic of China and South-east Asia have been planted in the bamboo reserve, of which 11 species have bloomed and seeded, and their seeds were cultivated in Xishuangbanna Tropical Botanic Gardens, CAS, China.

A plant nutrition strategy for ex-situ conservation based on "Ecological Similarity"

This paper reviewed a large scale conservation work of rare and endangered plants currently conducted in main botanical gardens in China, and the existed, predictable and neglected problems on plant growth and reproduction in ex-situ conservation process. Considered the status quo in plant ex conservation, a nutritional strategy on the plant conservation was proposed based on ＇Ecological Similarity＇. Its main idea was that the ex-situ conservation plants coming from natural ecosystem were compulsively allocated in the agro-ecosystems and would return to natural ecosystem ultimately. Therefore, research on plant nutrition of the ex-situ conservation plants should neither just pursue yield and quality as that in agro-ecosystems nor merely stay on intrinsic natures without human intervening. We should give attentions to both of their attributes as in natural ecosystems and in agro-ecosystems, i.e., taking full advantage of plant nutritional measures as in agro-ecosystems to solve actual survival problems of the ex-conservation plants, and ensuring the final goal of returning to nature and playing its ecological role.

Importance of Stewards and Other Protection Efforts for Conservation of Red Knots (Calidris canutus rufa) and Other Shorebirds on Delaware Bay, New Jersey

Understanding the factors that contribute to population stability in long-distance migrant birds is increasingly important, particularly given global climate change, sea level rise, and loss or disturbance at essential habitats. While the populations of most shorebirds are declining worldwide, those that migrate through Delaware Bay, New Jersey and Delaware, are declining at the most rapid rate despite conservation efforts. In this paper, we 1) provide background information on population declines of red knots (Calidris canutus rufa) using Delaware Bay, threats to their foraging, and efforts to reduce threats, 2) summarize briefly our studies of the effects of human activities on knots and other shorebirds, 3) present data on management efforts to protect knots and other shorebirds from the activities of people, and 4) discuss the efficacy of such efforts (usually referred to as “decreasing the effect of human disturbances”). The Shorebird Project on Delaware Bay is over 25 years old and provides long-term data to help assess the status of shorebird numbers, particularly for red knot, as well as the density of horseshoe crabs (Limulus polyphemus) and their eggs. Red knots have continued to decline even more precipitously in the last few years, presenting cause for concern. Protective efforts have been successful in reducing human disruption on the N.J. Delaware Bay beaches, but the lack of uniformity in implementation across the New Jersey side, and across the whole Bay have hampered further improvements. Implementation of signs, fencing, and stewards on some beaches significantly enhanced the use of these beaches by red knots, determined by examining the use of beaches pre- and post-implementation. Implementation of fencing and stewards had the greatest effect. From 1986 to 2018, there was a significant shift in the percent of Delaware Bay red knots using the NJ side, where protection efforts had been implemented on many of the beaches. Merely restricting access (without fencing or other efforts) did not result in more knots using the beaches post-restriction. This is the first paper that clearly shows the protective effects of having beach stewards. We discuss the long-term needs for continued management of Delaware Bay beaches, and other beaches coastwide, and of determining the causes of population declines of red knots.

Ex-situ Conservation of the some Medicinal Plants of Georgia

The present work concerns with ex-situ Conservation issues study of the three economical species Cyclamen vernum Sweet is a synonym of Cyclamen coum subsp.caucasicum(K.Koch)O.Schwarz(Primulaceae)Helleborus caucasicus A.Braun(Ranuculaceae)and Paeonia caucasica Schipcz)Schipcz.Is synonym of Paeonia dauricasubsp.Coriifolia(Rupr.)D.Y.Hong distribution in Georgia.These species are under strong anthropogenic stress,Its populations are collected in nature as a decorative and traditional medicinal properties.It is of urgent necessity to take conservation measures for these species through both ex-situ and in-situ protection methods.For this purpose it is of critical importance to collect data on the distribution of the above species and vitality and fertility of their populations.Processes of seed production and seed multiplication have been studied.The ex-situ base of the seed and live collection bank was created.The work is done in Great Britain within the framework of the“Millennium”Seed Bank Partnership of Kew Botanical Garden.The seeds are placed in the National Seed Bank,duplicates together with Herbarium sample are sent in the millennium seed bank.The live collection obtained from seeds is placed on the collection plot of Plant Conservation Department of the National Botanical Garden of Georgia.

Jankowski’s Bunting (Emberiza jankowskii): current status and conservation

Jankowski’s Bunting (Emberiza jankowskii) is a small bird with narrow distribution ranges. It has experienced a drastic population decline during recent years and vanished from most of its historic breeding sites. It has been recently up-graded as Endangered in the IUCN Red List of globally threatened species. By integrating unpublished data of field surveys conducted by us and published information on the species, we provide information on the status of distribution, breeding biology of the remaining population at the Dagang Forest Farm, population trends at currently known breeding sites, selection of breeding habitats and threats faced by the Jankowski’s Bunting. In light of its current status we also suggest ways and future research work related to protecting this bird species.

High regional genetic differentiation of an endangered relict plant Craigia yunnanensis and implications for its conservation

Of the genus Craigia,widespread in the Tertiary,only two relict species survived to modern times.One species is now possibly extinct and the other one,Craigia yunnanensis,is severely endangered.Extensive surveys have located six C.yunnanensis populations in Yunnan province,southwest China.Using fluorescent amplified fragment length polymorphism(AFLP),the genetic diversity and population structure of these populations were examined.It was found that genetic diversity of C.yunnanensis was moderate at the species level,but low at regional and population levels.Analysis of population structure showed significant genetic differentiation between Wenshan and Dehong regions,apparently representing two geographically isolated for long time refuges.There are also clear indications of isolation between populations,which,together with anthropogenically caused decline of population size,will lead to general loss of the species genetic variation with subsequent loss of adaptive potential.To conserve the genetic integrity of C.yunnanensis,we recommend that ex-situ conservation should include representative samples from every population of the two differentiated regions(e.g.Wenshan and Dehong).The crosses between individuals originated from different regions should be avoided because of a high risk of outbreeding depression.As all the extant populations of C.yunnanensis are in unprotected areas with strong anthropogenic impact,there is no alternative to reintroduction of C.yunnanensis into suitable protected locations.

Genetic diversity and structure of Rhododendron meddianum,a plant species with extremely small populations

Rhododendron meddianum is a critically endangered species with important ornamental value and is also a plant species with extremely small populations.In this study,we used double digest restriction-siteassociated DNA sequencing(ddRAD)technology to assess the genetic diversity,genetic structure and demographic history of the three extant populations of R.meddianum.Analysis of SNPs indicated that R.meddianum populations have a high genetic diversity(p?0.0772±0.0024,HE?0.0742±0.002).Both FST values(0.1582e0.2388)and AMOVA showed a moderate genetic differentiation among the R.meddianum populations.Meanwhile,STRUCTURE,PCoA and NJ trees indicated that the R.meddianum samples were clustered into three distinct genetic groups.Using the stairway plot,we found that R.meddianum underwent a population bottleneck about 70,000 years ago.Furthermore,demographic models of R.meddianum and its relative,Rhododendron cyanocarpum,revealed that these species diverged about 3.05(2.21e5.03)million years ago.This divergence may have been caused by environmental changes that occurred after the late Pliocene,e.g.,the Asian winter monsoon intensified,leading to a drier climate.Based on these findings,we recommend that R.meddianum be conserved through in situ,ex situ approaches and that its seeds be collected for germplasm.

Genetic diversity and population structure of Hibiscus aridicola, an endangered ornamental species in dry-hot valleys of Jinsha River

Hibiscus aridicola is an endangered ornamental shrub of the family Malvaceae that is endemic to the dryhot valleys of Jinsha River in southwestern China.This species is a typical plant species with extremely small populations(PSESP).To support and monitor future conservation,develop management measures,and genotype this species,we performed extensive field studies together with genetic analyses.Specifically,we screened eleven microsatellite loci of 69 individuals of H.aridicola from four accessions.The population genetics analyses indicated that H.aridicola possesses high genetic diversity at both the population(0.6962-0.7293)and species level(0.7837)compared to other endemic/endangered species in China.The low differentiation of populations(Fst=0.0971)and the high gene flow between populations of H.aridicola(Nm=2.3236)could be due to its distribution along rivers in the hot-valleys of the Jinsha River and the wind-mediated dispersal of its seeds.Furthermore,the genetic diversity of H.aridicola is slightly positively correlated with geographic distance.Two populations are undergoing a genetic bottleneck,and require more specific attention from conservationists.Additionally,our analyses of the population genetics of H.aridicola demonstrate that the declines in populations are not the result of the internal genetics of these populations but due to external human activities over the past decades.

Spatial Distribution Pattern of Populations of Isoetes sinensis Palmer, an Endangered Quillwort in China

The distribution pattern of Isoetes sinensis populations was investigated in relation to its biological characteristics such as age structure and regeneration mode, and the microenvironment. Contagious distribution pattern was found in populations of all sizes. Under the same climatic and site conditions, the heterogeneity of mieroenvironment resulting from the different depths of water and soil erosion significantly affecred the type and scale of distribution patterns of Isoetes sinensis populations. Even at the same site, the center and the edges of the water body had different effects on the distribution pattern of the plants. As one of the co-dominants, the distribution of Isoetes sinensis in communities was affected by other dominant species, especially by the evergreen grass species. Water is the major factor determining the distribution pattern of lsoetes sinensis in various communities. The pattern of contagious distribution was observed in different size of populations of I.sinensis, however the Lloyd indices obtained for the populations of various sizes differed significantly.