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Acellular fish skin grafts in diabetic foot ulcer care:Advances and clinical insights
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作者 Yu Zhao Quan-Quan Shen 《World Journal of Diabetes》 SCIE 2025年第1期34-38,共5页
Diabetic foot ulcers(DFUs)represents a significant public health issue,with a rising global prevalence and severe potential complications including amputation.Traditional treatments often fall short due to various lim... Diabetic foot ulcers(DFUs)represents a significant public health issue,with a rising global prevalence and severe potential complications including amputation.Traditional treatments often fall short due to various limitations such as high recurrence rates and extensive resource utilization.This editorial explores the innovative use of acellular fish skin grafts as a transformative approach in DFU management.Recent studies and a detailed case report highlight the efficacy of acellular fish skin grafts in accelerating wound closure,reducing dressing changes,and enhancing patient outcomes with a lower socio-economic burden.Despite their promise,challenges such as limited availability,patient acceptance,and the need for further research persist.Addressing these through more extensive randomized controlled trials and fostering a multidisciplinary treatment approach may optimize DFU care and reduce the global health burden associated with these complex wounds. 展开更多
关键词 Diabetic foot ulcer Acellular matrix tissues Acellular fish skin grafts Wound healing Bioengineered materials
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Impact of community public health care on treatment effect,health cognition,and self-management in patients with type 2 diabetes
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作者 Hong Shi Chun Liu Hong-Yan Luo 《World Journal of Clinical Cases》 SCIE 2025年第5期22-29,共8页
BACKGROUND At present,China has become the country with the largest number of individuals with diabetes mellitus(DM)in the world,with a total of approximately 140 million patients,the majority of whom have type 2 DM(T... BACKGROUND At present,China has become the country with the largest number of individuals with diabetes mellitus(DM)in the world,with a total of approximately 140 million patients,the majority of whom have type 2 DM(T2DM).Based on conven-tional nursing methods,community home care has important clinical significance in controlling blood sugar and disease progression.AIM To explore the impact of community public health nursing on treatment effect,health cognition,and self-management in patients with T2DM.METHODS One hundred patients with T2DM were selected as the research subjects.The patients were divided into either a conventional nursing group or community nursing(CN)group using the random number table method.The conventional nursing group(50 cases)received routine care,while the CN group(50 cases)received community public health care in addition to routine care as that for the conventional nursing group.The rate of excellent and good blood glucose control,fasting blood glucose before and after care,2-h postprandial blood glucose,health cognition,and self-management ability,and patient satisfaction were compared between the two groups.RESULTS The CN group had a higher rate of excellent blood sugar control than the conventional nursing group(88%vs 70%,P<0.05).Before care,there was no significant difference in fasting blood glucose or 2-h postprandial blood glucose between the two groups of patients(P>0.05).After nursing,fasting blood glucose and 2-h postprandial blood glucose were reduced to varying degrees in both groups,and both blood glucose levels in the CN group were lower than those of the conventional nursing group(P<0.05).Compared with the scores before care,the cognitive level score for diabetes and self-management ability score improved after care in both groups.The cognitive level and self-management ability of patients in the CN group were higher than those of the conventional nursing group(P<0.05).The overall satisfaction of the CN group was better than that of the conventional nursing group(98%vs 86%,P<0.05).CONCLUSION Community public health care based on conventional care of T2DM can achieve better blood sugar control,and improve patients’health cognitive level and self-management ability. 展开更多
关键词 community public health care Type 2 diabetes Blood sugar control Self-management ability Cognition level
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IHC与FISH在乳腺癌HER2蛋白表达和基因扩增检测中的应用 被引量:1
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作者 李小欢 张青 +2 位作者 张春蕾 徐子贻 袁小林 《标记免疫分析与临床》 CAS 2024年第3期550-553,共4页
目的比较免疫组织化学法(immunohistochemisity,IHC)和荧光原位杂交法(fluorescence in situ hybridization,FISH)在乳腺癌患者中检测人表皮生长因子受体2(human epidermal growth factor receptor 2,HER2)的应用。方法2019年2月至2022... 目的比较免疫组织化学法(immunohistochemisity,IHC)和荧光原位杂交法(fluorescence in situ hybridization,FISH)在乳腺癌患者中检测人表皮生长因子受体2(human epidermal growth factor receptor 2,HER2)的应用。方法2019年2月至2022年1月本院收治158例乳腺癌患者作为研究对象,均采用IHC和FISH检测HER2的蛋白表达和基因扩增情况,比较两种方法的检测结果和一致性。结果IHC结果显示158例患者中HER2(1+)、HER2(2+)、HER2(3+)分别为5例(3.16%)、97例(61.39%)、56例(35.44%),FISH结果显示HER2扩增73例(46.20%),未扩增85例(53.80%),其中,HER2(1+)患者FISH均显示未扩增,阴性符合率为100%;HER2(3+)患者FISH均显示扩增,阳性符合率为100%;97例HER2(2+)患者FISH显示扩增17例,阳性符合率为17.52%。两种方法检测HER2一致性较好且具有统计学意义(Kappa值=0.775,P<0.05)。结论HIC与FISH在乳腺癌患者HER2表达检测中一致性较好,可在临床推广使用,必要时需结合两种方法检测。 展开更多
关键词 乳腺癌 人表皮生长因子受体2 荧光原位杂交法 免疫组织化学法
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基于FISH和GISH技术的芝麻栽培种和野生种染色体组特征比较分析
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作者 马琴 赵瑞红 +5 位作者 琚铭 陈成彬 段迎辉 杨伟飞 苗红梅 张海洋 《河南农业科学》 北大核心 2024年第10期48-53,共6页
为揭示胡麻属物种进化特征,探究胡麻属基因组结构演变及物种进化,促进野生资源的开发利用,以芝麻栽培种豫芝11号和2n=26类型野生种S.alatum 3651为试验材料,采用荧光原位杂交(FISH)和基因组荧光原位杂交(GISH)技术对芝麻栽培种和野生种... 为揭示胡麻属物种进化特征,探究胡麻属基因组结构演变及物种进化,促进野生资源的开发利用,以芝麻栽培种豫芝11号和2n=26类型野生种S.alatum 3651为试验材料,采用荧光原位杂交(FISH)和基因组荧光原位杂交(GISH)技术对芝麻栽培种和野生种染色体组特征进行分析。结果表明,芝麻栽培种和野生种均为2n=2x=26类型;rDNA-FISH杂交结果显示,栽培种的13对染色体中,3对染色体(第7、8、9对染色体)的短臂端部携带45S rDNA特异信号,显示为随体特异染色体;2对染色体(第5、11对染色体)的短臂携带5S rDNA特异信号,5S rDNA与45S rDNA信号位于不同染色体上。野生种的13对染色体中,有2对染色体(第4、7对染色体)携带45S rDNA杂交信号,1对染色体(第4对染色体)携带5S rDNA特异信号,5S rDNA与45S rDNA信号位于同一染色体不同位置,表明栽培种与野生种的染色体组特征差异较大。GISH杂交结果显示,分别以栽培种和野生种的基因组DNA作探针与自身染色体杂交,每条染色体上携带不同强弱的杂交信号,而与对方染色体杂交,均表现出极少的杂交信号。芝麻栽培种和野生种具有相同的染色体数目,但染色体rDNA数量、分布及其GISH信号均存在明显差异,说明栽培种和野生种亲缘关系较远。 展开更多
关键词 芝麻 栽培种 野生种S.alatum 染色体组 rDNA 荧光原位杂交(fish) 基因组荧光原位杂交(GISH)
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尿脱落细胞FISH单染色体拷贝大量异常分析
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作者 汤永飞 何惠华 +3 位作者 阎红琳 刘琳 袁静萍 钱红 《临床与实验病理学杂志》 CAS 北大核心 2024年第4期436-438,441,共4页
目的探讨尿脱落细胞FISH单染色体拷贝大量异常病例的FISH检测结果特点与最终活检病理结果的相关性,进一步完善FISH阳性诊断标准。方法收集847例行尿脱落细胞FISH检测,选择其中不符合阳性标准、但存在大量单染色体拷贝的5例作为研究对象... 目的探讨尿脱落细胞FISH单染色体拷贝大量异常病例的FISH检测结果特点与最终活检病理结果的相关性,进一步完善FISH阳性诊断标准。方法收集847例行尿脱落细胞FISH检测,选择其中不符合阳性标准、但存在大量单染色体拷贝的5例作为研究对象,分析它们的临床特征、FISH检测结果特点、脱落细胞学特征和活检组织病理学检测结果。结果观察相应区域100个核异质上皮细胞,例1显示3号染色体3倍体扩增,异常细胞数32个;例2显示17号染色体3倍体扩增,异常细胞数48个;例3显示17号染色体5倍体扩增,异常细胞数56个;例4显示17号染色体单倍体,异常细胞数67个;例5显示p16基因杂合子缺失,异常细胞数61个,其它染色体均无异常。5例活检病理结果均为低级别或高级别乳头状尿路上皮癌。结论在临床实践中,尿脱落细胞FISH单染色体拷贝大量异常的病例应引起重视,将其归入可疑阳性比较合适,从而能提高尿FISH检测的敏感性,使患者获益。 展开更多
关键词 尿路上皮癌 尿脱落细胞 fish
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多基因组合FISH检测技术在黑色素瘤诊断中的应用价值及质控要点分析
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作者 范晓杰 贾迎 刘月平 《临床与实验病理学杂志》 CAS 北大核心 2024年第10期1088-1091,共4页
目的探讨FISH技术在黑色素瘤诊断中的应用价值及质控要点。方法应用黑色素瘤多基因组合FISH检测试剂盒,对109例色素样本中的6个基因位点(MYB、RREB1、PTEN、MYC、CDKN2A和CCND1)进行检测,分析FISH检测阳性病例的临床病理特征。结果黑色... 目的探讨FISH技术在黑色素瘤诊断中的应用价值及质控要点。方法应用黑色素瘤多基因组合FISH检测试剂盒,对109例色素样本中的6个基因位点(MYB、RREB1、PTEN、MYC、CDKN2A和CCND1)进行检测,分析FISH检测阳性病例的临床病理特征。结果黑色素瘤中的6个基因位点FISH阳性率均显著高于良性黑色素细胞痣(P<0.05)。88例黑色素瘤多基因组合FISH检测结果与各项临床病理特征相关性分析结果显示,不同黑色素瘤组织类型病例中同时3个及以上探针(≥3个探针)FISH阳性比例差异有统计学意义,其中结节型最高(100%),肢端雀斑样次之(96.43%),表浅播散型较低(82.35%)。Breslow厚度>2.0 mm病例中≥3个探针FISH阳性比率显著高于Breslow厚度≤2.0 mm病例。黑色素瘤样本的FISH质控关键点是组织固定:黑色素瘤组织FISH备片2.5~3μm厚为宜;若色素影响严重,可做单种绿色信号判读加其他检测方式辅助诊断。结论FISH检测6个基因位点对黑色素瘤辅助诊断具有重要价值;应严格进行黑色素瘤样本FISH技术的质量控制。 展开更多
关键词 黑色素瘤 fish 多基因组合 质量控制 辅助诊断
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FISH技术检测乳腺癌HER2基因的质控要点
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作者 申敬伟 董芳莉 杨海军 《诊断病理学杂志》 2024年第9期934-935,共2页
目的探讨FISH技术检测乳腺癌HER2基因的质控要点。方法收集2022年6月至2023年6月安阳市肿瘤医院病理科乳腺癌HER2 FISH检测样本208例。4例样本检测不合格需重新制片进行HER2 FISH检测,对比前后检测效果。结果4例样本重新制片后在荧光显... 目的探讨FISH技术检测乳腺癌HER2基因的质控要点。方法收集2022年6月至2023年6月安阳市肿瘤医院病理科乳腺癌HER2 FISH检测样本208例。4例样本检测不合格需重新制片进行HER2 FISH检测,对比前后检测效果。结果4例样本重新制片后在荧光显微镜下显示细胞核内杂交信号清晰,双色信号,背景干净。结论制定和完善FISH技术检测乳腺癌HER2基因的质控要点是保证FISH检测结果的准确性、可靠性和及时性的前提。 展开更多
关键词 乳腺癌 fish技术 HER2基因 质量控制
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Status and historical changes in the fish community in Erhai Lake 被引量:8
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作者 唐剑锋 叶少文 +5 位作者 李为 刘家寿 张堂林 郭志强 朱峰跃 李钟杰 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2013年第4期712-723,共12页
Erhai Lake is the second largest freshwater lake on the Yunnan Plateau, Southwest China. In recent decades, a number of exotic fish species have been introduced into the lake and the fish community has changed conside... Erhai Lake is the second largest freshwater lake on the Yunnan Plateau, Southwest China. In recent decades, a number of exotic fish species have been introduced into the lake and the fish community has changed considerably. We evaluated the status of the fish community based on surveys with multimesh gillnet, trap net, and benthic fyke-net between May 2009 and April 2012. In addition, we evaluated the change in the community using historical data (1952-2010) describing the fish community and fishery harvest. The current fish community is dominated by small-sized fishes, including Pseudorasbora parva, Rhinogobius giurinus, Micropercops swinhonis, Hemiculter leucisculus, and Rhinogobius cliffordpopei. These accounted for 87.7% of the 22 546 total specimens collected. Omnivorous and carnivorous species dominated the community. A canonical correspondence analysis (CCA) plot revealed that the distribution of fishes in the lake is influenced by aquatic plants, water temperature, pH, and season. The abundance of indigenous species has declined sharply, and a majority of endemic species have been extirpated from the lake (a decrease from seven to two species). In contrast, the number of exotic species has increased since the 1960s to a total of 22 at present. The fishery harvest decreased initially following the 1960s, but has since increased due to the introduction of non-native fish and stocking of native fish. The fishery harvest was significantly correlated with total nitrogen, not total phosphorus, during the past 20 years. Based on our results, we discuss recommendations for the restoration and conservation of the fish resources in Erhai Lake. 展开更多
关键词 Erhai Lake fish community small fishes indigenous fish species exotic fish species
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Fish community diversity in the middle continental shelf of the East China Sea 被引量:4
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作者 单秀娟 金显仕 +1 位作者 周志鹏 戴芳群 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2011年第6期1199-1208,共10页
The status of fishery stocks in the coastal waters of China is far from ideal, mainly due to climate change and the impacts of human activities (e.g., pollution and overfishing). Thus, the restoration and protection... The status of fishery stocks in the coastal waters of China is far from ideal, mainly due to climate change and the impacts of human activities (e.g., pollution and overfishing). Thus, the restoration and protection of fishery resources have become critical and complex. The stability and balanced structure of the fish community is a basic foundation for the protection of fishery resources. Based on data collected from bottom trawls by the R/V Beidou in continental shelf of the East China Sea in November 2006 and February 2007, changes in the composition and diversity of fish species and functional groups were analyzed. The research area was divided into offshore waters and inshore waters by the two-way indicator species analysis (TWIA). The results showed that the dominant species were different between offshore waters and inshore waters and also varied with the survey time. The most abundant family was Sciaenidae and Teraponidae in November 2006, Sciaenidae, Engraulidae and Triglidae were most abundant in February 2007. The species belonged mainly to mobile piscivores (G6), benthivores/piscivores (G4), benthivores (G3) and planktivores (G1), and the dominant species in November 2006 were commercial species (e.g. Larimichthys polyactis and Trichiurusjaponicus), but small-sized species were dominant in February 2007 (e.g., Harpadon nehereus, Benthosema pterotum, Champsodon capensis, and Acropoma japonieum). The species diversity showed a similar trend as the functional group diversity. Stations with higher diversity were mainly distributed in inshore waters in February 2007, whereas higher diversity was found in offshore waters in November 2006. The highest biomass and species number were found in G6 group, followed by the G4, G5 and GI groups. The distribution of the number of individuals of each functional group showed the opposite trend as that of the biomass distribution. In addition, the size spectra were mainly concentrated around 3-29 cm, and the individual number of fish species gradually decreased with the increase in body size, but the relative biomass showed a moderate fluctuation in each size class. These changes showed that species with faster growth rate and earlier maturity age became dominant in continental shelf of the East China Sea. So the variations in biological characteristics of fish should be fully considered in maintaining sustainable utilization of fishery resource. 展开更多
关键词 fish community DIVERSITY functional group East China Sea
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Community analysis of ammonia oxidizer in the oxygen-limited nitritation stage of OLAND system by DGGE of PCR amplified 16S rDNA fragments and FISH 被引量:17
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作者 ZHANGDan ZHANGDe-min +2 位作者 LIUYao-ping CAOWen-wei CHENGuan-xiong 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2004年第5期838-842,共5页
OLAND(oxygen limited autotrophic nitrification and denitrification) nitrogen removal system was constructed by coupling with oxygen limited nitritation stage and anaerobic ammonium oxidation stage. Ammonia oxidizer, a... OLAND(oxygen limited autotrophic nitrification and denitrification) nitrogen removal system was constructed by coupling with oxygen limited nitritation stage and anaerobic ammonium oxidation stage. Ammonia oxidizer, as a kind of key bacteria in N cycle, plays an important role at the oxygen limited nitritation stage of OLAND nitrogen removal system. In this study, specific amplification of 16S rDNA fragment of ammonia oxidizer by nested PCR, separation of mixed PCR samples by denaturing gradient gel electrophoresis(DGGE), and the quantification of ammonia oxidizer by fluorescence in situ hybridization(FISH) were combined to investigate the shifts of community composition and quantity of ammonia oxidizer of the oxygen limited nitritation stage in OLAND system. It showed that the community composition of ammonia oxidizer changed drastically when dissolved oxygen was decreased gradually, and the dominant ammonia oxidizer of the steady nitrite accumulation stage were completely different from that of the early stage of oxygen limited nitritation identified by DGGE . It was concluded that the Nitrosomonas may be the dominant genus of ammonia oxidizer at the oxygen limited nitritation stage of OLAND system characterized by nested PCR-DGGE and FISH, and the percentage of Nitrosomonas was 72.5% ±0.8% of ammonia oxidizer at the steady nitrite accumulation stage detected by FISH. 展开更多
关键词 OLAND NITRITATION ammonia oxidizer DGGE fish
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Changes in fish diversity and community structure in the central and southern Yellow Sea from 2003 to 2015 被引量:7
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作者 CHEN Yunlong SHAN Xiujuan +3 位作者 JIN Xianshi JOHANNESSEN Arne YANG Tao DAI Fangqun 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2018年第3期805-817,共13页
The central and southern Yellow Sea is an important overwintering ground for many fish species in the Bohai Sea and Yellow Sea. For better understanding the status of the fish community after years of heavy exploitati... The central and southern Yellow Sea is an important overwintering ground for many fish species in the Bohai Sea and Yellow Sea. For better understanding the status of the fish community after years of heavy exploitation, variations in fish community structure and diversity were analyzed using data from bottom trawls during 2003–2015. Five fish assemblage indices all showed fluctuations without clear trends from 2003 to 2015, yet there were strong positive and significant correlations(P < 0.05) among them. The top-five dominant species accounted for a high weight percentage(49.7%–82.1%) in the annual fish catch. Multivariate analysis showed that two year groups could be pooled for the fish community: Group Ⅰ consisted of the years 2006, 2007, 2008 and 2015, while Group Ⅱ consisted of the years 2003, 2004, 2005, 2009, 2010 and 2014; the groups aggregated with 63.71% similarity, indicating a high level of similarity among all years. The multivariate dispersion values were 1.455 and 0.818 for Groups Ⅰ and Ⅱ, respectively, indicating greater variances in fish assemblage structure in Group Ⅰ than that in Group Ⅱ. Similarity of percentage analysis demonstrated that the average similarities for Group Ⅰ and Group Ⅱ were 71.58% and 67.51%, respectively. Size-spectra analysis revealed no consistent trend in the intercept and slope( P > 0.05); there were also no significant differences between the slope of the size-spectra and fishing ef fort. The catch per unit ef fort and mean individual weight analyses of the whole fish assemblage both showed a significantly decreasing trend over time. Overall, the results showed that the fish community structure in the central and southern Yellow Sea was relatively stable from 2003 to 2015 and the study could be used as a reference for supporting ecosystem-based fishery management. 展开更多
关键词 dominant species fish community structure multivariate analysis trawl data
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Study on fish community structure in the Zhujiang Estuaryand its adjacent waters 被引量:1
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作者 Zhan Haigang( South China As Fisheries Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China) 《Acta Oceanologica Sinica》 SCIE CAS CSCD 1999年第4期581-589,共9页
Based on data of demersal trawl Samples from 1987 to 1988 in the Zhujiang Estuary and its adjacent waters, relationships between fish community and environmental factors are studied by using clssification , MDS ordina... Based on data of demersal trawl Samples from 1987 to 1988 in the Zhujiang Estuary and its adjacent waters, relationships between fish community and environmental factors are studied by using clssification , MDS ordina-tion and several community parameters. The results shaw that the distribution of fish shoes is zoned by salinty anddivided into three types. The freshwater community which is restricted in the Lianhua Hill - Humen waterway is sim-ple and stable, the coastal community which lives in the shallow waters is complex, and the estuary community whichis idenhfied in the Lingdingyang area and affected by Physical and ecological pinemore greatly greatly has obvious seasonalvariations. 展开更多
关键词 Zhujiang Estuary fish community structure ORDINATION
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Determination of the Fish Community Structure of an Intertidal Rocky Zone of the Pacific Coast of Baja California Sur 被引量:1
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作者 Laura E. Cota-Ortega Emelio Barjau-Gonzalez +4 位作者 Juan Manuel López-Vivas José Ángel Armenta-Quintana Javier Aguilar-Parra Elvia Esthela Aispuro-Felix Abril Karim Romo Piñera 《Open Journal of Marine Science》 2022年第1期1-18,共18页
The intertidal zone (also known as seashore) are transition areas between land and sea, that are greatly influenced by the tide cycle, therefore, environmental parameters, such as temperature and salinity, oscillate a... The intertidal zone (also known as seashore) are transition areas between land and sea, that are greatly influenced by the tide cycle, therefore, environmental parameters, such as temperature and salinity, oscillate according to the periods in which these areas are exposed to air. Intertidal zones are highly diverse, which makes them key ecosystems for the development of sea life (both flora and fauna) exposed to drastic environmental change. The <span style="white-space:normal;font-size:10pt;font-family:;" "="">59 visual censuses campaigns were carried out during the full moon of each month from 2015 to 2019. Temperature, salinity and dissolved oxygen were recorded during each visual census and showed variations between years. Temperature showed two distinct seasons, warm and cold. A total of 14,995 organisms were recorded, belonging to 30 species, 28 genera, 15 families, five orders and one class. Ecological indices like species richness (SR), Shannon-Wiener’s diversity (H') and Fisher’s alpha (</span><i style="white-space:normal;"><span style="font-size:10pt;font-family:;" "="">α</span></i><span style="white-space:normal;font-size:10pt;font-family:;" "="">-Fisher) showed significant differences between years, 2015 and 2016 recorded as the most diverse years, while the lowest values were recorded in 2019. Therefore, fish communities of tide pools showed to be highly diverse, with 30 species recording similar relative abundances, and according to the BVI, only 11 species were dominant. Spatio-temporal variations of temperature, salinity and dissolved oxygen were highly </span><span style="white-space:normal;font-size:10pt;font-family:;" "="">cor</span><span style="white-space:normal;font-size:10pt;font-family:;" "="">related </span><span style="white-space:normal;font-size:10pt;font-family:;" "="">to</span><span style="white-space:normal;font-size:10pt;font-family:;" "=""> changes in fish community structure, and the dominance of certain species, which are of great importance for the structure and dynamic of the tide pool communities.</span><span style="white-space:normal;font-size:10pt;font-family:;" "=""> Therefore, the aim of the present study was to determine the fish community structure of tide pools during the low tide in the intertidal zone of a locality known as El Faro, on the west coast of La Paz, B. C. S., Mexico.</span> 展开更多
关键词 Rockpools Ecological Indices fish community Structure Intertidal Zone
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Effects of DNA extraction and universal primers on 16S rRNA gene-based DGGE analysis of a bacterial community from fish farming water 被引量:16
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作者 罗鹏 胡超群 +2 位作者 张吕平 任春华 沈琪 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2007年第3期310-316,共7页
Among many reports investigating microbial diversity from environmental samples with denaturing gradient gel electrophoresis (DGGE), limited attention has been given to the effects of universal primers and DNA extract... Among many reports investigating microbial diversity from environmental samples with denaturing gradient gel electrophoresis (DGGE), limited attention has been given to the effects of universal primers and DNA extraction on the outcome of DGGE analysis. In this study, these effects were tested with 16S rRNA gene-based DGGE on a bacterial community from farming water samples. The results indicate that the number of discernable bands in the DGGE fingerprint differed with the primer pairs used; the bands produced by 63f/518r, 341f/926r and 933f/1387r primer pairs were obviously fewer than those by 968f/1401r. Also, we found that each DNA extraction method resulted in different community profiles, reflected by the number and intensity of bands in the DGGE fingerprint. Furthermore, the main bands (theoretically representing dominant bacteria) differed with the extraction methods applied. It is therefore believed that the effects of universal primers and DNA extraction should be given more attention and carefully chosen before performing an investigation into a new environment with DGGE. 展开更多
关键词 DNA extraction universal primers bacterial community DGGE
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Spatiotemporal variation in community structure of marine benthic ciliates in the Yellow Sea during and after macroalgal and giant jellyfish blooms 被引量:5
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作者 周百灵 徐奎栋 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2016年第4期629-641,共13页
The annual bloom of the green macroalgal Ulva prolifera from May through July since 2008 and another of giant jellyfi sh Nemopilema nomurai from June through September have been frequent events in the Yellow Sea. Howe... The annual bloom of the green macroalgal Ulva prolifera from May through July since 2008 and another of giant jellyfi sh Nemopilema nomurai from June through September have been frequent events in the Yellow Sea. However, the patterns of benthic ciliate communities during and after the blooms are still not known. In combination with analyses of benthic environmental factors, we investigated the distribution and community composition of benthic ciliates in the Yellow Sea in July and November 2011. In July, ciliates had high standing crops and diversity in the northern Yellow Sea, and in the inshore area off the southern Shandong Peninsula, where large numbers of green macroalgae accumulated. In November, the abundance, biomass and diversity of ciliates were high in the sea areas off the Shandong Peninsula and Changjiang estuary, where a large quantity of jellyfi sh occurred in August. Neither the abundance nor the biomass had signifi cant diff erence between seasons, or between diff erent compartments of the Yellow Sea. The species number, and both Margalef and Shannon-Wiener indices of ciliates were all signifi cantly higher in November than in July. In both seasons, prostomateans and karyorelicteans consistently constituted the fi rst and second most important ciliate groups in biomass; and carnivorous ciliates constituted the primary feeding type in terms of biomass as well as species richness, followed by bacterivores, algivores and omnivores. Compared with that in June 2007 when no macroalgae occurred, the percentage of small-sized bacterivores(e.g. Metacystis spp., Euplotes spp. and scuticociliates) increased in July 2011. The proportion of carnivorous ciliates increased in November, and this increased dominance of carnivorous ciliates may be a response to the increase in predominance of heterotrophic nanofl agellates, which might in turn be ascribed to an eff ect of green macroalgal and giant jellyfi sh blooms in the Yellow Sea. 展开更多
关键词 benthic ciliates diversity community structure feeding types Yellow Sea
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Bacterial community succession in response to dissolved organic matter released from live jellyfish 被引量:1
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作者 HAO Wenjin WICHELS Antje +2 位作者 FUCHS Bernhardt TANG Xuexi GERDTS Gunnar 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2019年第4期1229-1244,共16页
Jellyfish blooms have increased worldwide, and the outbreaks of jellyfish population not only affect the food web structures via voracious predation but also play an important role in the dynamics of nutrients and oxy... Jellyfish blooms have increased worldwide, and the outbreaks of jellyfish population not only affect the food web structures via voracious predation but also play an important role in the dynamics of nutrients and oxygen in planktonic food webs. However, it remains unclear whether specific carbon compounds released through jellyfish metabolic processes have the potential to shape bacterial community composition. Therefore, in this study, we aimed to investigate the compositional succession of the bacterioplankton community in response to the dissolved organic matter (DOM) released by the live Scyphomedusae Cyanea lamarckii and Chrysaora hysoscella collected from Helgoland Roads of the North Sea. The bacterial community was significantly stimulated by the DOM released form live jellyfish and different dominant phylotypes were observed for these two Scyphomedusae species. Furthermore, the bacterial community structures in the different DOM sources, jellyfish-incubated media, Kabeltonne seawater, and artificial seawater (DOM-free) were significantly different, as revealed by automated ribosomal intergenic spacer analysis fingerprints. Catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH) revealed a rapid species-specific shift in bacterial community composition. Gammaproteobacteria dominated the community instead of the Bacteroidetes community for C. lamarckii, whereas Gammaproteobacteria and Bacteroidetes dominated the community for C. hysoscella. The significant differences in the bacterial community composition and succession indicate that the components of the DOM released by jellyfish might differ with jellyfish species. 展开更多
关键词 BACTERIAL community structure BACTERIAL community composition dissolved organic matter JELLYfish automated rRNA INTERGENIC spacer analysis (ARISA) catalyzed REPORTER deposition fluorescence in situ hybridization (CARD-fish)
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Temporal Distribution of Fish Community Structure in Dongting Lake Estuary 被引量:1
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作者 Xiping Yuan Xin Yang +2 位作者 Hongzi Ge Hong Li Daqing Deng 《Agricultural Sciences》 2019年第3期294-301,共8页
The Dongting Lake Estuary is migration pathways for some river-lake migratory and semi-migratory fishes. In the present study, an annual survey of fish was conducted from January to November 2018 covering a total of 6... The Dongting Lake Estuary is migration pathways for some river-lake migratory and semi-migratory fishes. In the present study, an annual survey of fish was conducted from January to November 2018 covering a total of 6 sites in Dongting Lake Estuary. A total of 57 freshwater species and subspecies belonging to 5 orders and 10 families were recorded. The catches at the Dongting Lake Estuary were mainly composed of Lake settled fish. The biomass of Cyprinus (Cyprinus) carpio Linnaeus was the highest, accounting for 25.53% of the total catches, followed by Hypophthalmichthys molitrixs, Culter alburnus Basilewsky and Ctenopharyngodon idellus, accounting for 10.41%, 8.99% and 7.10% of the total catches, respectively. The four major domestic carps accounted for 26.13% of the total catch. The range of richness of species varied between 40 and 51 species. The trend was fewer species in spring, with the arrival of summer and autumn gradually increasing, peaking at the turn of summer and autumn, and then gradually decreasing with the arrival of winter, to the lowest in spring. The Shannon, Simpson, Pielou and Margalef indices showed the consistent trends with richness of species. 展开更多
关键词 BIODIVERSITY Dongting LAKE ESTUARY FRESHWATER fish
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A Comparative Study of Fish Community in Four Main Estuaries of China Southeastern Coastal Areas and Their Adjacent Waters 被引量:1
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作者 HUANG Liangmin ZHANG Yazhi +1 位作者 JIN Xianshi SHAN Xiujuan 《Journal of Ocean University of China》 SCIE CAS 2010年第2期169-177,共9页
Based on literature and survery data of fish composition collected by bottom trawl investigation from 2006 to 2007 infour main estuaries of China southeastern coastal areas and their adjacent waters,changes of the tax... Based on literature and survery data of fish composition collected by bottom trawl investigation from 2006 to 2007 infour main estuaries of China southeastern coastal areas and their adjacent waters,changes of the taxonomic diversity across spatialand temporal scales of fish community were analyzed by taxonomic diversity indices.The results are as follows:a total number of1397 fish species(including some freshwater species),belonging to 2 classes,42 orders,186 families and 593 genera,were collected inthe studied sea areas.The species richness increased with lower latitudes,particularly so with Perciformes.There were 339 fish spe-cies in the Yangtze River Estuary and adjacent waters,belonging to 2 classes,31 orders,101 families and 231 genera.There were 535fish species in the Minjiang River Estuary and adjacent waters,belonging to 2 classes,33 orders,133 families and 323 genera.A totalnumber of 803 fish species were collected in the Jiulongjiang River Estuary and adjacent waters,which belonged to 2 classes,35 orders,155 families and 419 genera.And 1021 fish species which belonged to 2 classes,32 orders,153 families,and 466 genera were collectedin the Pearl River Estuary and adjacent waters.The numbers of orders and families of fish species from the northern to the southern wa-ters first increased and then decreased.The average variation in taxonomic distinctness(Λ+)gradually decreased with lower latitudes inthe four estuaries and adjacent waters.There were no significant differences in the average taxonomic distinctness(△+)among the fourestuaries and adjacent waters,and fish fauna were closely related with each other,and all of them belonged to the same zoogeographicalfauna(Indian-Malaysia fauna).Fish composition in the Minjiang River Estuary and adjacent waters was more similar to that in the Jiu-longjiang River Estuary and adjacent waters among the four estuaries.Compared with the historical data,the average taxonomic dis-tinctness of fish community showed a great decrease in the Minjiang River Estuary and the Jiulongjiang River Estuary and their adjacentwaters. 展开更多
关键词 the Minjiang River Estuary the Jiulongiiang River Estuary the Yangtze River Estuary the Pearl River Estuary taxonomic diversity fish fauna
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Characterization of Bacterial Community,Ammonia-Oxidizing Bacteria,and Nitrospira During the Operation of a Commercial-Scale Recirculating Aquaculture System for Culturing Pufferfish Takifugu rubripes 被引量:1
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作者 MA Yuexin YU Zichao +3 位作者 DU Xin ZHANG Tao WANG Ning TAO Wei 《Journal of Ocean University of China》 SCIE CAS CSCD 2020年第6期1399-1408,共10页
We investigated the changes in communities of bacteria,ammonia-oxidizing bacteria,and Nitrospira during the operation of a pufferfish Takifugu rubripes recirculating aquaculture system by using high-throughput DNA seq... We investigated the changes in communities of bacteria,ammonia-oxidizing bacteria,and Nitrospira during the operation of a pufferfish Takifugu rubripes recirculating aquaculture system by using high-throughput DNA sequencing.Differences in bacterial communities were observed at days 1-32,47-62 and 78-93 of biofilm development by using 16S rRNA gene pyrosequencing.The relative abundance of Proteobacteria(Gammaproteobacteria)increased,while that of Bacteroidetes(Flavobacteria)decreased.The proportions of Nitrosomonas and Nitrospina ranged from 0.02%to 0.30%and from 0.02%to 0.83%,respectively.Ammonia monooxygenase gene pyrosequencing revealed that the top three operational taxonomic units were related to Nitrosomonas aestuarii(17.5%-61.1%),uncultured beta proteobacterium clone B67S-54(1.9%-45.2%),and uncultured bacterium clone AZPa8(3.6%-24.7%).Nitrite oxidoreductase gene pyrosequencing revealed that the relative abundance of the dominant strain Nitrospira sp.Ecomares 2.1 increased,but that of the abundant species Nitrospira marina decreased.Our results demonstrated that the communities of bacteria,ammonia-oxidizing bacteria,and Nitrospira were changing during the operation of the pufferfish recirculating aquaculture system. 展开更多
关键词 BIOFILTER bacterial community ammonia-oxidizing bacteria NITROSPIRA recirculating aquaculture system
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Functional Diversity of the Fish Community Associated to Soft-Bottoms in the Lagoon of La Paz B.C.S., México
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作者 Hernandez-Villasana Carlos Samuel Barjau-González Emelio +2 位作者 López-Vivas Juan Manuel Armenta-Quintana José Angel Suárez-Villavicencio Jaime 《Open Journal of Marine Science》 2020年第4期233-244,共12页
There has been an increase of community studies that incorporate the use of functional diversity indices. The incorporation of these indices in the analysis of marine communities is recent, however, could contribute w... There has been an increase of community studies that incorporate the use of functional diversity indices. The incorporation of these indices in the analysis of marine communities is recent, however, could contribute with relevant information about the health of those communities. The lagoon of La Paz is a body of water located in La Paz, B.C.S., México. Despite its regional importance, there are not recent studies about its fish communities. Therefore, the aim of the present study was to analyze the temporal and spatial structure of the functional diversity of fish communities associated to soft bottoms, from August 2016 to July 2017, as well as important environmental variables. Functional diversity indices showed significant differences between months. Spatial analysis did not show significant differences perhaps due to low variability of the type of substrate. Temperature showed temporal differences as well. Therefore, temperature may be a limiting environmental variable for many fish species inhabiting coastal lagoons. 展开更多
关键词 Coastal Lagoon Functional Diversity Functional Traits fish community
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