Analysis of Plant Diversity Characteristics in Jiangxia Wetland

[Objectives]This study was conducted to explore the characteristics of plant diversity of Jiangxia Wetland in Lhasa River basin.[Methods]Based on the survey data of 37 plant community in three types of sample plots of Jiangxia Wetland in the Lhasa River basin,this study analyzed the diversity of plant community in different habitats of Jiangxia Wetland from Pielou evenness,Margalef richness,Simpson and Shannon Wiener diversity indexes of different types and levels.[Results]The Pielou index,Shannon-Wiener index and Simpson diversity index of dry land was higher than those of other plots,while the Margalef species richness index of the ecotone of seasonally flooded and dry land was higher than that of other plots.The Pielou index,Shannon-Wiener index,Simpson diversity index and Margalef species richness index of composite plants were higher than those of other herbaceous plants.The Shannon-Wiener index,Simpson diversity index and Margalef species richness index of hygrophytes were higher than those of other plants,while the Pielou index evenness index of aquatic plants was higher than that of other plants.Annual or perennial herbaceous plants occupied the primary position in the study area,and shrub plants occupied a secondary position,and floating plants took the lowest position.[Conclusions]The results of this study can provide theoretical support or reference basis for the scientific management of comprehensive wetland systems such as wetland ecosystem restoration and plant diversity protection in Jiangxia Wetland.

Quantifyingα-diversity as a continuous function of location——a case study of a temperate forest

α-diversity describes species diversity at local scales.The Simpson’s and Shannon-Wiener indices are widely used to characterizeα-diversity based on species abundances within a fixed study site(e.g.,a quadrat or plot).Although such indices provide overall diversity estimates that can be analyzed,their values are not spatially continuous nor applicable in theory to any point within the study region,and thus they cannot be treated as spatial covariates for analyses of other variables.Herein,we extended the Simpson’s and Shannon-Wiener indices to create point estimates ofα-diversity for any location based on spatially explicit species occurrences within different bandwidths(i.e.,radii,with the location of interest as the center).For an arbitrary point in the study region,species occurrences within the circle plotting the bandwidth were weighted according to their distance from the center using a tri-cube kernel function,with occurrences closer to the center having greater weight than more distant ones.These novel kernel-basedα-diversity indices were tested using a tree dataset from a 400 m×400 m study region comprising a 200 m×200 m core region surrounded by a 100-m width buffer zone.Our newly extendedα-diversity indices did not disagree qualitatively with the traditional indices,and the former were slightly lower than the latter by<2%at medium and large band widths.The present work demonstrates the feasibility of using kernel-basedα-diversity indices to estimate diversity at any location in the study region and allows them to be used as quantifiable spatial covariates or predictors for other dependent variables of interest in future ecological studies.Spatially continuousα-diversity indices are useful to compare and monitor species trends in space and time,which is valuable for conservation practitioners.

Taxonomic diversity of fish assemblages in the Changjiang Estuary and its adjacent waters

Taxonomic diversity of fish assemblages in the Changjiang Estuary （Yangtze River Estuary） and its adjacent waters was analyzed based on bottom trawl surveys carried out by R/V Beidou in June, August and October 2006. Four groups of fishes were identified for each survey by the twoway indicator species analysis （TWIA）. Taxonomic distinctness, species richness and phylogenetic diversity were used to detect changes in taxonomic structure of fish assemblages. Most dominant fish species mainly belonged to Perciformes, Pleuronectiformes, Clupeiformes, Scorpaeniformes and Tetraodontiformes. Species richness in offshore waters of the survey area was higher than that in the other area. The average taxonomic distinctness value （AvTD,△^＋） of each fish assemblage was close to the average taxonomic distinctness of master list in the Changjiang Estuary （79.9）, and had a positive correlation with species richness and Shannon diversity index （H′）. A negative correlation was found between variations in taxonomic distinctness （VarTD, A^＋） and traditional diversity indices, which were caused by fish species component that led to longer average path lengths among species. Taxonomic diversity index （△） had the similar results with species richness, Ht, Simpson diversity index （D） and Pielou＇s evenness index （J′）. VarTD also kept stable, which further certificated that fish assemblages and ecological environment were in equilibrium. Taxonomic distinctness index （△^＋） was relatively stable in most of fish assemblages, and had higher values in some fish assemblages for a few absolutely dominant species. The present study showed that fish community formed new equilibrium stability in 2006 in the Changjiang Estuary when compared with those in the corresponding months of annual survey from 1985 to 1986. And AvTD in each sampling station was lower than AvTD of master list in the Changjiang Estuary, so some ecological niches were absent in each sampling stations from taxonomic or phylogenetic relationships, these would be helpful to stock natural resource and maintain ecological equilibruim of fish assemblages.

Fish species diversity in the Huanghe Estuary

This paper lists 50 fish specs in the Huanghe Estuary, which belong to 9 orders, 22 families and 37 genera. The paper describes the seasonal distributions of these fish species and the succession of the important fish species during the past 50 a. The authors discuss the main factors that have resulted in the changes in fish species diversity and the fishery resources. These include the overexploitation of the fishery and the sharp reduction in the fresh water discharges from the Huanghe River.

Species composition and diversity of pelagic fishes based on a longline fishery catch in the North Pacific Ocean

Evaluation of spatial-temporal variability of species composition and diversity in oceanic ecosystems is not easy because it is usually difficult to obtain sufficient data quantifying such variability.In this study,we examined pelagic species diversity indicators,species richness,Shannon-Wiener index of diversity and Hurlbert's species evenness,for fish assemblages from two areas(north and south) in the North Pacific Ocean(2°±12°N,178°E±165°W) during May±July 2008.The assemblages were based on data collected by an onboard scientific observer during a commercial longline fishing trip.The species richness and Shannon-Wiener diversity index of fish assemblages in the northern area were slightly higher than those in the southern area,although these differences were not significant(t test,P.0.05).Non-parametric multidimensional scaling and analysis of similarities indicated that there were significant differences in fish assemblages between the two areas(P,0.01).

Spatio-seasonal patterns of fish diversity,Haizhou Bay,China

Spatial-seasonal patterns in fish diversity in Haizhou Bay were studied based on stratified random surveys conducted in 2011.Principal component analysis was conducted to distinguish different diversity components,and the relationships among 11 diversity indices were explored.Generalized additive models were constructed to examine the environmental effects on diversity indices.Eleven diversity indices were grouped into four components:(1) species numbers and richness,(2) heterogeneous indices,(3) evenness,and(4) taxonomic relatedness.The results show that diversity indices among different components are complementary.Spatial patterns show that fish diversity was higher in coastal areas,which was affected by complex bottom topography and spatial variations of water mass and currents.Seasonal trends could be best explained by the seasonal migration of dominant fish species.Fish diversity generally declined with increasing depth except for taxonomic distinctness,which increased with latitude.In addition,bottom temperature had a significant effect on diversity index of richness.These results indicate that substrate complexity and environmental gradients had important influences on fish diversity patterns,and these factors should be considered in fishery resource management and conservation.Furthermore,diversity in two functional groups(demersal/pelagic fishes) was influenced by different environmental factors.Therefore,the distribution of individual species or new indicators in diversity should be applied to examine spatio-seasonal variations in fish diversity.

Fish community diversity in the middle continental shelf of the East China Sea

The status of fishery stocks in the coastal waters of China is far from ideal, mainly due to climate change and the impacts of human activities （e.g., pollution and overfishing）. Thus, the restoration and protection of fishery resources have become critical and complex. The stability and balanced structure of the fish community is a basic foundation for the protection of fishery resources. Based on data collected from bottom trawls by the R/V Beidou in continental shelf of the East China Sea in November 2006 and February 2007, changes in the composition and diversity of fish species and functional groups were analyzed. The research area was divided into offshore waters and inshore waters by the two-way indicator species analysis （TWIA）. The results showed that the dominant species were different between offshore waters and inshore waters and also varied with the survey time. The most abundant family was Sciaenidae and Teraponidae in November 2006, Sciaenidae, Engraulidae and Triglidae were most abundant in February 2007. The species belonged mainly to mobile piscivores （G6）, benthivores/piscivores （G4）, benthivores （G3） and planktivores （G1）, and the dominant species in November 2006 were commercial species （e.g. Larimichthys polyactis and Trichiurusjaponicus）, but small-sized species were dominant in February 2007 （e.g., Harpadon nehereus, Benthosema pterotum, Champsodon capensis, and Acropoma japonieum）. The species diversity showed a similar trend as the functional group diversity. Stations with higher diversity were mainly distributed in inshore waters in February 2007, whereas higher diversity was found in offshore waters in November 2006. The highest biomass and species number were found in G6 group, followed by the G4, G5 and GI groups. The distribution of the number of individuals of each functional group showed the opposite trend as that of the biomass distribution. In addition, the size spectra were mainly concentrated around 3-29 cm, and the individual number of fish species gradually decreased with the increase in body size, but the relative biomass showed a moderate fluctuation in each size class. These changes showed that species with faster growth rate and earlier maturity age became dominant in continental shelf of the East China Sea. So the variations in biological characteristics of fish should be fully considered in maintaining sustainable utilization of fishery resource.

Diversity Analysis of Chlorophyll, Flavonoid, Anthocyanin, and Nitrogen Balance Index of Tea Based on Dualex

The chemical compositions of tea(Camellia sinensis)are affected by numerous factors,such as cultivar,climate,leaf position,and cultivation pattern.However,under the same conditions,the chemical compositions are mainly determined by varieties.Therefore,we investigated the genetic diversity of chemical compositions of tea tree resources in China to screen excellent germplasm resources.Three chemical compositions index(including chlorophyll index,flavonoid index,and anthocyanin index)and the nitrogen balance index of tea leaves were measured in 102 tea germplasms planted in Chinese Tea Plants Improved Variety Germplasm Resources Nursery(CTPIVGRN)by Dualex on April 152019.Results showed that the chlorophyll,flavonoid,and anthocyanin contents and the nitrogen balance index significantly differed between the 102 tea germplasms.The genetic diversity index values were 2.005,2.246,1.599,and 1.838,and the average genetic diversity was 1.922.The 102 tea germplasms can be divided into four categories by cluster analysis under the genetic distance threshold of 11.These results suggest that the genetic diversity of tea germplasm resources in China is rich.This study’s results can serve as a basis for the diversified development and utilization of tea plant.

ANALYSIS OF HABITAT PATTERN CHANGE OF RED-CROWNED CRANES IN THE LIAO HE DELTA USING SPATIAL DIVERSITY INDEX

Habitat pattern change of red-crowned cranes (Grus japonensis) in t he Liaohe Delta between 1988 and 1998 was analyzed with the help of Spatial Dive rsity Index based on remote sensing data and field investigation. The result sho wed that the influence from human activities on the wetland habitat of red-crow ned cranes was prominent with the development of oil and agricultural exploitati on, and the habitat pattern of red-crowned cranes had been obviously changed by the human disturbance during the ten years. The areas with high Spatial Diversi ty values (SD≥0.65) and that with mid-high values (0.5≤SD< 0.65), which const ituted the main part of suitable habitat of red-crowned cranes,had reduced to 9142ha and 5576ha respectively, with the shrinking of natural land cover, such a s reed and Suaeda community. The habitat pattern became more fragmented, which w as caused by roads and wells during oil exploration. It was indicated that the s uitability and quality of habitat for red-crowned cranes in the Liaohe Delta we re degraded in the last decade. The results also showed that diversity index cou ld reflect the habitat suitability of red-crowned cranes quantitatively and des cribe the spatial pattern of the habitat explicitly. This study will provide a s cientific basis for habitat protection of red-crowned cranes and other rare spe cies in wetlands.

Effects of sampling strategies and DNA extraction methods on eDNA metabarcoding: A case study of estuarine fish diversity monitoring

Environmental DNA(eDNA)integrated with metabarcoding is a promising and powerful tool for species composition and biodiversity assessment in aquatic ecosystems and is increasingly applied to evaluate fish diversity.To date,however,no standardized eDNA-based protocol has been established to monitor fish diversity.In this study,we investigated and compared two filtration methods and three DNA extraction methods using three filtration water volumes to determine a suitable approach for eDNA-based fish diversity monitoring in the Pearl River Estuary(PRE),a highly anthropogenically disturbed estuarine ecosystem.Compared to filtration-based precipitation,direct filtration was a more suitable method for eDNA metabarcoding in the PRE.The combined use of DNeasy Blood and Tissue Kit(BT)and traditional phenol/chloroform(PC)extraction produced higher DNA yields,amplicon sequence variants(ASVs),and Shannon diversity indices,and generated more homogeneous and consistent community composition among replicates.Compared to the other combined protocols,the PC and BT methods obtained better species detection,higher fish diversity,and greater consistency for the filtration water volumes of 1000 and 2000 mL,respectively.All eDNA metabarcoding protocols were more sensitive than bottom trawling in the PRE fish surveys and combining two techniques yielded greater taxonomic diversity.Furthermore,combining traditional methods with eDNA analysis enhanced accuracy.These results indicate that methodological decisions related to eDNA metabarcoding should be made with caution for fish community monitoring in estuarine ecosystems.

The Rich-Gini-Simpson quadratic index of biodiversity

The Gini-Simpson quadratic index is a classic measure of diversity, widely used by ecologists. As shown recently, however, this index is not suitable for the measurement of beta diversity when the number of species is very large. The objective of this paper is to introduce the Rich- Gini-Simpson quadratic index which preserves all the qualities of the classic Gini-Simpson index but behaves very well even when the number of species is very large. The additive partitioning of species diversity using the Rich-Gini- Simpson quadratic index and an application from island biogeography are analyzed.

The weighted quadratic index of biodiversity for pairs of species: a generalization of Rao’s index

The distribution of biodiversity at multiple sites of a region has been traditionally investigated through the additive partitioning of the regional biodiversity, called γ-diversity, into the average within-site biodiversity or α-diversity, and the biodiversity among sites, or β-diversity. The standard additive partitioning of diversity requires the use of a measure of diversity which is a concave function of the relative abundance of species, like the Shannon entropy or the Gini- Simpson index, for instance. When a phylogenetic distance between species is also taken into account, Rao’s quadratic index has been used as a measure of dissimilarity. Rao’s index, however, is not a concave function of the distribution of relative abundance of either individual species or pairs of species and, consequently, only some nonstandard additive partitionings of diversity have been given using this index. The objective of this paper is to show that the weighted quadratic index of biodiversity, a generalization of the weighted Gini-Simpson index to the pairs of species, is a concave function of the joint distribution of the relative abundance of pairs of species and, therefore, may be used in the standard additive partitioning of diversity instead of Rao’s index. The replication property of this new measure is also discussed.

Genetic Diversity in Cultivated Groundnut Based on SSR Markers

Peanut （Arachis hypogaea L.） is an important source crop for edible oil and protein. It is important to identify the genetic diversity of peanut genetic resources for cultivar development and evaluation of peanut accessions. Thirty-four SSR markers were used to assess the genetic variation of four sets of twenty-four accessions each from the four botanical varieties of the cultivated peanut. Among the tested accessions, ten to sixteen pairs of SSR primers showed polymorphisms. The maximum differentiation index, which was defined as the degree of genetic differentiation, was as high as 0.992 in the tested accessions. Each accession could be discriminated by a specific set of polymorphic SSR primers, and the intra-variety genetic distance was determined among accessions, with an average of 0.59 in var. fastigiata, 0.46 in var. hypogaea, 0.38 in var. vulgaris, and 0.17 in var. hirsuta. Dendrogrames based on genetic distances were constructed for the four botanical varieties, which revealed the existence of different clusters. It was concluded that there was abundant intra-variety SSR polymorphism, and with more and more SSR markers being developed, the intrinsic genetic diversity would be detected and the development of genetic map and marker-assisted selection for cultivated peanut would be feasible.

Fish Diversity and Fish Assemblage Structure in Seagrass Meadows at Sikao Bay, Trang Province, Thailand

We investigated the relationship between environmental variables as descriptors of the fish community, in terms of species diversity indices and fish assemblage patterns, in seagrass meadows at Sikao Bay, Trang Province, Thailand. Fish data and water quality parameters were collected from January to December 2012. A total of 10,596 fish specimens of 97 taxa in 48 families from four stations, Kham Bay (7°30'9.21''N, 99°18'7.67''E), Boonkong Bay (7°31'2.49''N, 99°17'40.09''E), Ban Pak Klong (7°36'17.67''N, 99°16'32.89''E) and Sai Cape (7°38'30.19''N, 99°14'49.85''E), were collected using gillnets of three different mesh sizes. The three most diverse families were Leiognathidae, Carangidae and Tetraodontidae, respectively. The dominant species were Atherinomorus duodecimalis, Sillago sihama and Pelates quadrilineatus. Specimens were highly abundant in July and less so in January and species richness was high in July and less so in March. Fish assemblages were classified into two patterns and the average of the Shannon index was 2.7. The environmental parameters in each month were analyzed by one-way ANOVA which did not show significant difference (P > 0.05) of pH, orthophosphate, wind speed and rainfall. Fish diversity and assemblage, and environmental parameters, were categorized into four groups. These could be promoted to local fisheries so that conservation programs cpuld be set up to ensure the ecological sustainability of seagrass meadows.

Functional Diversity of the Fish Community Associated to Soft-Bottoms in the Lagoon of La Paz B.C.S., México

There has been an increase of community studies that incorporate the use of functional diversity indices. The incorporation of these indices in the analysis of marine communities is recent, however, could contribute with relevant information about the health of those communities. The lagoon of La Paz is a body of water located in La Paz, B.C.S., México. Despite its regional importance, there are not recent studies about its fish communities. Therefore, the aim of the present study was to analyze the temporal and spatial structure of the functional diversity of fish communities associated to soft bottoms, from August 2016 to July 2017, as well as important environmental variables. Functional diversity indices showed significant differences between months. Spatial analysis did not show significant differences perhaps due to low variability of the type of substrate. Temperature showed temporal differences as well. Therefore, temperature may be a limiting environmental variable for many fish species inhabiting coastal lagoons.

A Study on the Fish Diversity of Sanhuanpao Wetland in Heilongjiang Province

The current situation of fish in Sanhuanpao Wetland was investigated for the first time in this paper. In May( Spring),July( summer),September( autumn) 2016,it was sampled three times for investigation,and based on the investigation data about the fish caught by net45 times in 9 sampling points,the species composition of fish community in the water was analyzed. The results showed that a total of 12 fish species were caught in this investigation,belonging to 4 orders,6 families and 12 genera. There were five fish species for Cyprinidae,accounting for 41. 7% of total species,followed by Cobitidae with three species,accounting for 25% of total species; Siluridae,Esocidae,Eleotridae and Channidae each had 1 species,accounting for 8. 3% of total species. The fish with index of relative importance( IRI) greater than 1000 is the dominant species,and it was calculated that the dominant species were Carassius auratus gibelio,Rhynchocypris percnurus,Misgurnus mohoity,Cobitis taenia Linnaeus,and Perccottus glenii. In this paper,based on the number of individuals,by calculating Margalcf abundance index( D),Shannon-Wiener diversity index( H') and Pielou evenness index( J') for the fish in the water,the current situation of fish resources in Sanhuanpao Wetland was analyzed and the corresponding protection recommendations were put forward.

Fish Species Diversity in Upstream and Downstream of Sittaung River,Bago Region,Myanmar

This research was conducted to generate a primary database on ichthyofauna,distribution and diversities in the upstream and downstream segments of Sittaung River in Bago Region of Myanmar.This study contributes to the information needed on the distribution of river fish in Myanmar.Fish diversities are assessed by calculating the various diversities indices between December,2018 and November,2019.A total of 65 fish species belonging to 9 orders,23 families and 49 genera were recorded.All 65 fish species were found in upstream segment but only 60 species of them were found in downstream segment of the river.In all study sites,Shannon diversity index had value above 3 indicating that the structure of habitat was stable and balanced.Simpson’s index values were close to 1 in all sites indicating that the species richness in the region was satisfactory.The abundance all of above 5%of total catch of Mystus vittatus,M.pulcher,M.cavasius and Erethistes pusillus in their feeding habitat suggested that their upstream and downstream habitats provided suitable feeding conditions.Anguilla bengalensis,Tenualosa ilisha,Mystus gulio,Rita rita and Silonia silondia were least abundant all below 0.1%of total catch showing they could be impacted by unwise anthropogenic activities.Assessing fish species diversity is thus very important to conserve and manage and promote the health of river ecosystem that is necessary for the migration of fish species.

Landscape pattern and diversity of natural secondary forests in the eastern mountainous region, northeast China:A case study of Mao'ershan region in Heilongjiang Province

Mao抏rshan region is a representative natural secondary forested region in the eastern mountainous region, north-east of China. Under the support of ARC/INFO, the landscape pattern and landscape diversity of Maoerhshan region were studied by combining the forest type map (1:10000), which was drawn from the aerial photographs (1999), field investigation and land utilization map (1:10000). The selected indices included patch number, patch size, patch density index, richness index, dominance index, evenness index and diversity index. The results showed that the landscape dominant forest type in Mao抏rshan region was softwood broad-leaved forest. In all landscape types, the average patch area of natural secondary for-ests was bigger than that of artificial forest. The patch density index of each landscape formed in artificial forest was higher than that of natural secondary forest. The landscape diversity index and landscape evenness index of natural forest were highest, the landscape heterogeneity was also, but the landscape dominance was lower. In natural forest, the control effects of landscape elements on landscape-structure, function and its change were weakened. The artificial forest was on the contrary.

Diversity and Dynamics of Soil Free-Living Nematode Populations in a Mediterranean Agroecosystem

To determine the effect of agricultural management on the dynamics and functional diversity of soil nematode communities in a carrot field at Kibbutz Ramat Hakovesh, Israel, soil samples from 0-10 cm and 10-20 cm depths were collected during the growing season of carrot. Indices were used to compare and assess the response of soil free-living nernatode communities to agricultural management. Eighteen nematode families and 20 genera were observed during the growing period, with Cephalobus, Rhabditidae, Aphelenchus, Tylenchus, and Dorylaimus being the dominant genera/families. During the planting, mid-season and post-harvest periods the total number of nematodes at both depths was significantly lower (P < 0.01) in the carrot treatment than in the control plots, while during the harvest period at both depths total nematodes and bacterivores were significantly higher in the treatment plots (P < 0.01). The values of the maturity index (MI) at both depths were found to be significantly lower in the treatment plots than in the control plots during the pre-planting period (P < 0.05). Overall, WI, MI and PPI were found to be more sensitive indicators than other ecological indices for assessing the response of nematode communities to agricultural management in a Mediterranean agroecosystem

Thinning intensity affects microbial functional diversity and enzymatic activities associated with litter decomposition in a Chinese fir plantation

Microbial functional diversity and enzymatic activities are critical to maintaining material circulation during litter decomposition in forests.Thinning,an important and widely used silvicultural treatment,changes the microclimate and promotes forest renewal.However,how thinning affects microbial functional diversity and enzymatic activities during litter decomposition remains poorly understood.We conducted thinning treatments in a Chinese fir plantation in a subtropical region of China with four levels of tree stem removal（0,30,50,and 70%）,each with three replicates,and the effects of thinning on microbial functional diversity and enzymatic activities were studied 7 years after treatment by collecting litter samples four times over a 1-year period.Microbial functional diversity and enzymatic activities were analyzed using Biolog Ecoplates（Biolog Inc.,Hayward,CA,USA）based on the utilization of 31 carbon substrates.Total microbial abundance during litter decomposition was lower after the thinning treatments than without thinning.Microbial functional diversity did not differ significantly during litter decomposition,but the types of microbial carbon-source utilization did differ significantly with the thinning treatments.Microbial cellulase and invertase activities during litter decomposition were significantly higher under the thinning treatments due to changes in the litter carbon concentration and the ratios of carbon and lignin to nitrogen.The present study demonstrated the important influence of thinning on microbial activities during litter decomposition.Moderate-intensity thinning may maximize vegetation diversity and,in turn,increase the available substrate sources for microbial organisms in litter and promote nutrient cycling in forest ecosystems.