Evaluation of genetic response of mesenchymal stem cells to nanosecond pulsed electric fields by whole transcriptome sequencing

BACKGROUND Mesenchymal stem cells(MSCs)modulated by various exogenous signals have been applied extensively in regenerative medicine research.Notably,nanosecond pulsed electric fields(nsPEFs),characterized by short duration and high strength,significantly influence cell phenotypes and regulate MSCs differentiation via multiple pathways.Consequently,we used transcriptomics to study changes in messenger RNA(mRNA),long noncoding RNA(lncRNA),microRNA(miRNA),and circular RNA expression during nsPEFs application.AIM To explore gene expression profiles and potential transcriptional regulatory mechanisms in MSCs pretreated with nsPEFs.METHODS The impact of nsPEFs on the MSCs transcriptome was investigated through whole transcriptome sequencing.MSCs were pretreated with 5-pulse nsPEFs(100 ns at 10 kV/cm,1 Hz),followed by total RNA isolation.Each transcript was normalized by fragments per kilobase per million.Fold change and difference significance were applied to screen the differentially expressed genes(DEGs).Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses were performed to elucidate gene functions,complemented by quantitative polymerase chain reaction verification.RESULTS In total,263 DEGs were discovered,with 92 upregulated and 171 downregulated.DEGs were predominantly enriched in epithelial cell proliferation,osteoblast differentiation,mesenchymal cell differentiation,nuclear division,and wound healing.Regarding cellular components,DEGs are primarily involved in condensed chromosome,chromosomal region,actin cytoskeleton,and kinetochore.From aspect of molecular functions,DEGs are mainly involved in glycosaminoglycan binding,integrin binding,nuclear steroid receptor activity,cytoskeletal motor activity,and steroid binding.Quantitative real-time polymerase chain reaction confirmed targeted transcript regulation.CONCLUSION Our systematic investigation of the wide-ranging transcriptional pattern modulated by nsPEFs revealed the differential expression of 263 mRNAs,2 miRNAs,and 65 lncRNAs.Our study demonstrates that nsPEFs may affect stem cells through several signaling pathways,which are involved in vesicular transport,calcium ion transport,cytoskeleton,and cell differentiation.

Response of rice to inoculation with genetic engineered strains of associative diazotrophs

Enhancement of nitrogen fixation in the rhizo-sphere of cereals has attracted a wide interestin biological and agricultural research,insteadof chemicals,for supplying higher plants withcombined nitrogen.Bacteria in association withrice plant.s were sensitive to the surroundingfactors in the soil,such as NH~+ or O,whichrepressed associative nitrogen fixation between

Design optimization of transonic compressor stage using CFD and response surface model

In order to shorten the design period, the paper describes a new optimization strategy for computationally expensive design optimization of turbomachinery, combined with design of experiment (DOE), response surface models (RSM), genetic algorithm (GA) and a 3-D Navier-Stokes solver(Numeca Fine). Data points for response evaluations were selected by improved distributed hypercube sampling (IHS) and the 3-D Navier-Stokes analysis was carried out at these sample points. The quadratic response surface model was used to approximate the relationships between the design variables and flow parameters. To maximize the adiabatic efficiency, the genetic algorithm was applied to the response surface model to perform global optimization to achieve the optimum design of NASA Stage 35. An optimum leading edge line was found, which produced a new 3-D rotor blade combined with sweep and lean, and a new stator one with skew. It is concluded that the proposed strategy can provide a reliable method for design optimization of turbomachinery blades at reasonable computing cost.

Optimization of press bend forming path of aircraft integral panel

In order to design the press bend forming path of aircraft integral panels,a novel optimization method was proposed, which integrates FEM equivalent model based on previous study,the artificial neural network response surface,and the genetic algorithm.First,a multi-step press bend forming FEM equivalent model was established,with which the FEM experiments designed with Taguchi method were performed.Then,the BP neural network response surface was developed with the sample data from the FEM experiments.Furthermore,genetic algorithm was applied with the neural network response surface as the objective function. Finally,verification was carried out on a simple curvature grid-type stiffened panel.The forming error of the panel formed with the optimal path is only 0.098 39 and the calculating efficiency has been improved by 77%.Therefore,this novel optimization method is quite efficient and indispensable for the press bend forming path designing.

Genetic and Epigenetic Effects of Plant-Pathogen Interactions： An Evolutionary Perspective

Recent reports suggest that exposure to stress is capable of influencing the frequency and pattern of inherited changes in various parts of the genome. In this review, we will discuss the influence of viral pathogens on somatic and meiotic genome stability of Nicotiana tabacum and Arabidopsis thaliana. Plants infected with a compatible pathogen generate a systemic recombination signal that precedes the spread of pathogens and results in changes in the somatic and meiotic recombination frequency. The progeny of infected plants exhibit changes in global and locusspecific DNA methylation patterns, genomic rearrangements at transgenic reporter loci and resistance gene-like-loci, and even tolerance to pathogen infection and abiotic stress. Here, we will discuss the contribution of environmental stresses to genome evolution and will focus on the role of heritable epigenetic changes in response to pathogen infection.