With the rapid development of big data, the scale of realistic networks is increasing continually. In order to reduce the network scale, some coarse-graining methods are proposed to transform large-scale networks into...With the rapid development of big data, the scale of realistic networks is increasing continually. In order to reduce the network scale, some coarse-graining methods are proposed to transform large-scale networks into mesoscale networks. In this paper, a new coarse-graining method based on hierarchical clustering (HCCG) on complex networks is proposed. The network nodes are grouped by using the hierarchical clustering method, then updating the weights of edges between clusters extract the coarse-grained networks. A large number of simulation experiments on several typical complex networks show that the HCCG method can effectively reduce the network scale, meanwhile maintaining the synchronizability of the original network well. Furthermore, this method is more suitable for these networks with obvious clustering structure, and we can choose freely the size of the coarse-grained networks in the proposed method.展开更多
Investigation of genetic diversity of geographically distant wheat genotypes is </span><span style="font-family:Verdana;">a </span><span style="font-family:Verdana;">useful ...Investigation of genetic diversity of geographically distant wheat genotypes is </span><span style="font-family:Verdana;">a </span><span style="font-family:Verdana;">useful approach in wheat breeding providing efficient crop varieties. This article presents multivariate cluster and principal component analyses (PCA) of some yield traits of wheat, such as thousand-kernel weight (TKW), grain number, grain yield and plant height. Based on the results, an evaluation of economically valuable attributes by eigenvalues made it possible to determine the components that significantly contribute to the yield of common wheat genotypes. Twenty-five genotypes were grouped into four clusters on the basis of average linkage. The PCA showed four principal components (PC) with eigenvalues ></span><span style="font-family:""> </span><span style="font-family:Verdana;">1, explaining approximately 90.8% of the total variability. According to PC analysis, the variance in the eigenvalues was </span><span style="font-family:Verdana;">the </span><span style="font-family:Verdana;">greatest (4.33) for PC-1, PC-2 (1.86) and PC-3 (1.01). The cluster analysis revealed the classification of 25 accessions into four diverse groups. Averages, standard deviations and variances for clusters based on morpho-physiological traits showed that the maximum average values for grain yield (742.2), biomass (1756.7), grains square meter (18</span><span style="font-family:Verdana;">,</span><span style="font-family:Verdana;">373.7), and grains per spike (45.3) were higher in cluster C compared to other clusters. Cluster D exhibited the maximum thousand-kernel weight (TKW) (46.6).展开更多
Heatmap cluster figures are often used to represent data sets in the?omic sciences. The default option of the frequently used R heatmap function is to cluster data according to Euclidean distance, which groups data ma...Heatmap cluster figures are often used to represent data sets in the?omic sciences. The default option of the frequently used R heatmap function is to cluster data according to Euclidean distance, which groups data mainly to their numerical value and not to its relative behaviour. The disadvantage of using the default clustering?dendrograms of R is demonstrated. Instead, a script is provided that uses correlation as distance function, which better reveals biologically meaningful information. This optimized script was used to detect heterotic groups in Vitamaize hybrids (purple maize with high nutraceutical value). A field trial with different genetic combinations was performed through an agricultural phenomics approach (holistic evaluation of the phenotype). The grain yield data and other phenotypic variables were represented through heatmap figures. In the data set of Mexican tropical maize germplasm, at least three heterotic groups were detected, in contrast to only two heterotic groups reported earlier in temperate yellow maize from USA and Europe. This optimized script for heatmap correlation bicluster can also be used to better represent metabolomic fingerprints and transcriptomic data sets.展开更多
研究晶界工程处理过程中的冷轧变形量和再结晶退火对白铜B10合金晶界特征分布的影响,采用电子背散射衍射(EBSD)技术表征分析晶界网络的变化。结果表明:白铜B10合金经冷轧7%后在800℃退火10 min可使低ΣCSL(Coincidence site lattice,Σ...研究晶界工程处理过程中的冷轧变形量和再结晶退火对白铜B10合金晶界特征分布的影响,采用电子背散射衍射(EBSD)技术表征分析晶界网络的变化。结果表明:白铜B10合金经冷轧7%后在800℃退火10 min可使低ΣCSL(Coincidence site lattice,Σ≤29)晶界比例提高到75%以上,同时形成尺寸较大的"互有Σ3n取向关系晶粒的团簇"显微组织。当变形量小于7%时,经800℃退火后没有完全再结晶;当变形量大于7%时,低ΣCSL晶界比例和平均晶粒团簇的尺寸随冷轧变形量的增加而下降。展开更多
文摘With the rapid development of big data, the scale of realistic networks is increasing continually. In order to reduce the network scale, some coarse-graining methods are proposed to transform large-scale networks into mesoscale networks. In this paper, a new coarse-graining method based on hierarchical clustering (HCCG) on complex networks is proposed. The network nodes are grouped by using the hierarchical clustering method, then updating the weights of edges between clusters extract the coarse-grained networks. A large number of simulation experiments on several typical complex networks show that the HCCG method can effectively reduce the network scale, meanwhile maintaining the synchronizability of the original network well. Furthermore, this method is more suitable for these networks with obvious clustering structure, and we can choose freely the size of the coarse-grained networks in the proposed method.
文摘Investigation of genetic diversity of geographically distant wheat genotypes is </span><span style="font-family:Verdana;">a </span><span style="font-family:Verdana;">useful approach in wheat breeding providing efficient crop varieties. This article presents multivariate cluster and principal component analyses (PCA) of some yield traits of wheat, such as thousand-kernel weight (TKW), grain number, grain yield and plant height. Based on the results, an evaluation of economically valuable attributes by eigenvalues made it possible to determine the components that significantly contribute to the yield of common wheat genotypes. Twenty-five genotypes were grouped into four clusters on the basis of average linkage. The PCA showed four principal components (PC) with eigenvalues ></span><span style="font-family:""> </span><span style="font-family:Verdana;">1, explaining approximately 90.8% of the total variability. According to PC analysis, the variance in the eigenvalues was </span><span style="font-family:Verdana;">the </span><span style="font-family:Verdana;">greatest (4.33) for PC-1, PC-2 (1.86) and PC-3 (1.01). The cluster analysis revealed the classification of 25 accessions into four diverse groups. Averages, standard deviations and variances for clusters based on morpho-physiological traits showed that the maximum average values for grain yield (742.2), biomass (1756.7), grains square meter (18</span><span style="font-family:Verdana;">,</span><span style="font-family:Verdana;">373.7), and grains per spike (45.3) were higher in cluster C compared to other clusters. Cluster D exhibited the maximum thousand-kernel weight (TKW) (46.6).
文摘Heatmap cluster figures are often used to represent data sets in the?omic sciences. The default option of the frequently used R heatmap function is to cluster data according to Euclidean distance, which groups data mainly to their numerical value and not to its relative behaviour. The disadvantage of using the default clustering?dendrograms of R is demonstrated. Instead, a script is provided that uses correlation as distance function, which better reveals biologically meaningful information. This optimized script was used to detect heterotic groups in Vitamaize hybrids (purple maize with high nutraceutical value). A field trial with different genetic combinations was performed through an agricultural phenomics approach (holistic evaluation of the phenotype). The grain yield data and other phenotypic variables were represented through heatmap figures. In the data set of Mexican tropical maize germplasm, at least three heterotic groups were detected, in contrast to only two heterotic groups reported earlier in temperate yellow maize from USA and Europe. This optimized script for heatmap correlation bicluster can also be used to better represent metabolomic fingerprints and transcriptomic data sets.
文摘研究晶界工程处理过程中的冷轧变形量和再结晶退火对白铜B10合金晶界特征分布的影响,采用电子背散射衍射(EBSD)技术表征分析晶界网络的变化。结果表明:白铜B10合金经冷轧7%后在800℃退火10 min可使低ΣCSL(Coincidence site lattice,Σ≤29)晶界比例提高到75%以上,同时形成尺寸较大的"互有Σ3n取向关系晶粒的团簇"显微组织。当变形量小于7%时,经800℃退火后没有完全再结晶;当变形量大于7%时,低ΣCSL晶界比例和平均晶粒团簇的尺寸随冷轧变形量的增加而下降。
