Multiple omics datasets reveal significant physical and physiological dormancy in alfalfa hard seeds identified by multispectral imaging analysis

Physical dormancy(PY) commonly present in the seeds of higher plants is believed to be responsible for the germination failure by impermeable seed coat in hard seeds of legume species, instead of physiological dormancy(PD). In this study, a non-destructive approach involving multispectral imaging was used to successfully identify hard seeds from non-hard seeds in Medicago sativa, with accuracy as high as96.8%–99.0%. We further adopted multiple-omics strategies to investigate the differences of physiology,metabolomics, methylomics, and transcriptomics in alfalfa hard seeds, with non-hard seeds as control.The hard seeds showed dramatically increased antioxidants and 125 metabolites of significant differences in non-targeted metabolomics analysis, which are enriched in the biosynthesis pathways of flavonoids, lipids and hormones, especially with significantly higher ABA, a hormone known to induce dormancy. In our transcriptomics results, the enrichment pathway of “response to abscisic acid” of differential expressed genes(DEG) supported the key role of ABA in metabolomics results. The methylome analysis identified 54,899, 46,216 and 54,452 differential methylation regions for contexts of CpG, CHG and CHH, and 344 DEGs might be regulated by hypermethylation and hypomethylation of promoter and exon regions, including four ABA-and JA-responsive genes. Among 8% hard seeds in seed lots,24.5% still did not germinate after scarifying seed coat, and were named as non-PY hard seeds.Compared to hard seeds, significantly higher contents of ABA/IAA and ABA/JA were identified in nonPY hard seeds, which indicated the potential presence of PD. In summary, the significantly changed metabolites, gene expressions, and methylations all suggested involvement of ABA responses in hard seeds, and germination failure of alfalfa hard seeds was caused by combinational dormancy(PY + PD),rather than PY alone.

Conditions and Stimulation for Germination in Glycyrrhiza uralensis Fisch Seeds

Evaluation of seed quality is the key to seed distributing and seeding of Glycyrrhiza uralensis Fisch, as an important species for pharmacy and soil conservation. Here, we study the effects of light and temperature on seed germination and mechanical and chemical scarification on breaking the seed coat. Seeds were collected in 2004, 2005, and 2006, placed in Petri dishes, and incubated at constant temperature 20, 25, and 30℃, and alternating temperature 15-25, 20-30, 15-30, and 20-35℃ under either an 8h photoperiod or total darkness for 28 consecutive days. Different methods were used to break the dormancy owing to hard seededness in this species such as chemical scarification by immersing in concentrated sulphuric acid for 5, 10, 15, 20, 25, 30, 45, and 60 min, in 0.2% KNO3 solution to saturate the seedbed, and prechilling for 7 d at 7℃ and mechanical scarification by cutting. The results showed that alternating temperature at 20-30℃ with 8 h photoperiod and 16 h darkness was optimum for G. uralensis seed germinating in the laboratory. Hard seeds were broken by concentrated sulphuric acid soaking or mechanical scarification by cutting. Germination of seeds harvested in two different years was both promoted by immersing for 30-45 min in concentrated sulphuric acid. KNO3 solution was ineffective for reducing hard seeds. During seed germinating, the first count was on the 7th day and the last count was on the 14th day.