Bimolecular interactions play crucial roles in lignin pyrolysis.The tautomerization of key intermediates has a significant impact on the formation of stable products,whereas bimolecular tautomerization has been rarely...Bimolecular interactions play crucial roles in lignin pyrolysis.The tautomerization of key intermediates has a significant impact on the formation of stable products,whereas bimolecular tautomerization has been rarely clarified.In the present work,the bimolecular tautomerization mechanism induced by both concerted and radical interactions was proposed and carefully confirmed.A characteristicβ-O-4 lignin dimer,2-phenoxy-1-phenylethanol(α-OH-PPE),was used as the model compound to reveal two representative keto-phenol and enol-keto tautomerism mechanisms,based on theoretical calculations combined with pyrolysis experiments.The results indicate that the unimolecular tautomerism as the rate-determining step limits product generation,due to fairly high energy barriers.While the free hydroxy compounds and radicals derived from initial pyrolysis can further initiate bimolecular tautomerism reactions through the one-step concerted hydroxyl-assisted hydrogen transfer(hydroxylAHT)and two-step radical hydrogen abstraction interactions,respectively.By alleviating and even avoiding the large ring tension of tautomerism,the unstable tautomers(2,4-cyclohexadienone and1-hydroxy styrene)can be rapidly tautomerized into stable phenol and acetophenone with the help of intermolecular interaction.Benefitting from the significant advantage of retro-ene fragmentation in breaking theβ-O-4 bond to form tautomers,a large amount of stable phenolic and ketone products can be generated following bimolecular tautomerization in the pyrolysis ofβ-O-4 linked lignin.展开更多
Introduction Organic compounds usually have labile bonds. It is well known that thousands of reactions are carried out in solutions, only a few in the gas-phase. Most chemists are now familiar with the fact that solve...Introduction Organic compounds usually have labile bonds. It is well known that thousands of reactions are carried out in solutions, only a few in the gas-phase. Most chemists are now familiar with the fact that solvent may have a strong influence on reaction rate and equilibrium, so in the last decade, resarching the influence of solvent effects on reaction rate and reaction equilibrium was a very important and展开更多
The hybrid calculations with ONIOM(B3LYP/6-31G*:AM1) method were carried out on the tautomerization reaction of formamide to formamidic acid in the microcontainer-encapsulated state. The free-state tautomerization...The hybrid calculations with ONIOM(B3LYP/6-31G*:AM1) method were carried out on the tautomerization reaction of formamide to formamidic acid in the microcontainer-encapsulated state. The free-state tautomerization process was also investigated with B3LYP/6-31G**//B3LYP/6-31G* method for the purpose of comparison. Bare tautomerization, H20-assisted(single-H20 or multiple-HaO) and self-assisted mechanisms were all taken into consideration for the encapsulated state. The results show that only bare tautomerization and single-H2O catalysis mechanisms are possible to the encapsulated formamide tautomerization owing to the container's size confinement effect. Geometrical changes in the complexed container and guest molecules are discussed to deeply understand the complex's structural properties. The bare tautomerization barrier in the encapsulated state increases by 23.826 kJ/mol, accounting for 12% of the corresponding total energy barrier in the free state, and the increased values for the single-H2O catalysis process are 12.958 kJ/mol, accounting for 16% of the corresponding total energy barrier, respectively. This finding suggests that the encapsulation can make the tautomerization process slightly difficult.展开更多
It is important to study the solvent effect on keto-enol tautomerism that has applications in many areas of chemical engineering.In this work,we use a multiscale reaction density functional theory(Rx DFT)to study the ...It is important to study the solvent effect on keto-enol tautomerism that has applications in many areas of chemical engineering.In this work,we use a multiscale reaction density functional theory(Rx DFT)to study the keto-enol tautomerism and isomerization of pyruvic acid.The results show that both effects of solvation and water assistance could reduce the reaction barriers.The water molecule participates the reaction as a catalyst to accept/give the protons with forming a hexagonal ring in the transition state.As a result of this temporary and intermediate hexagonal ring,the solute configuration undergoes a small variation during the reaction,giving a diminished contribution to the intrinsic reaction free energy.The solvent distribution shows a local ordering behavior near the solute that also reduces the contribution of solvation effect to the reaction barrier.Water assistance plays a major role in both pre-reaction and postreaction process.In terms of the driving force for the reaction,the effects of both solvation and water assistance are important.展开更多
The formation of humins hampers the large-scale production of 5-hydroxymethylfurfural(HMF)in biorefinery.Here,a detailed reaction network of humin formation at the initial stage of fructose-to-HMF dehydration in water...The formation of humins hampers the large-scale production of 5-hydroxymethylfurfural(HMF)in biorefinery.Here,a detailed reaction network of humin formation at the initial stage of fructose-to-HMF dehydration in water is delineated by combined experimental,spectroscopic,and theoretical studies.Three bimolecular reaction pathways to build up soluble humins are demonstrated.That is,the intermolecular etherification of β-furanose at room temperature initiates the C12 path,whereas the C-C cleavage of a-furanose at 130-150℃ leads to C11 path,and that of open-chain fructose at 180℃ to C11' path.The successive intramolecular dehydrations and condensations of the as-formed bimolecular intermediates lead to three types of soluble humins.We show that the C12 path could be restrained by using HCl or AlCl_(3) catalyst,and both the C12 and C110 paths could be effectively inhibited by adding THF as a co-solvent or accelerating heating rate via microwave heating.展开更多
The enamines, iminium ions, and oxazolidinones are thought to be the key intermediates in the proline-catalyzed reactions of aldehydes or ketones, but there is an extensive contro- versy about their roles. Here, the c...The enamines, iminium ions, and oxazolidinones are thought to be the key intermediates in the proline-catalyzed reactions of aldehydes or ketones, but there is an extensive contro- versy about their roles. Here, the corresponding transition states connecting any two of the three kinds of species are located at the wB97XD/6-311++G** level of theory. The calcula- tions demonstrate that the oxazolidinones are the predominant species in both the gas phase and solvents; there exists tautomeric equilibrium among these species and the equilibriums are controlled by the employed solvents and temperature in the reaction. These results demonstrate that the concentration and role of the mentioned species are controlled by the employed solvent and temperature. A new reaction pathway is presented herein for the trans- formation between iminium ions and oxazolidinones through iminium ion-water complex and oxazolidinone-water complex. The calculations demonstrate that the rate-limiting step in proline-catalyzed Mannich reaction between acetaldehyde/keteones and N-Boc imines is the formation of the C-C bond rather than the intermediates tautomerization. These calculations rationalize the available experimental observations and can be valuable in optimizing the experimental conditions of asymmetric organic-catalyzed reactions of aldehydes or ketones.展开更多
The ground state hydrogen conformations and vibrational analysis of 3-deazauracil(3DAU)and 6-azauracil(6AU)tautomers(4-enol and 2,4-diol forms)have been calculated using ab initio Hartree-Fock(HF)and density functiona...The ground state hydrogen conformations and vibrational analysis of 3-deazauracil(3DAU)and 6-azauracil(6AU)tautomers(4-enol and 2,4-diol forms)have been calculated using ab initio Hartree-Fock(HF)and density functional theory(B3LYP)methods with 6-311++G(d,p)basis set level.The calculations have shown that the most probably preferential tautomer of 3DAU and 6AU are the 4-enol form,which gives best fit to the corresponding experimental data.The ground state conformer of the 2,4-diol form has two O—H bonds which are oriented externally and internally(to the N—H bond).The vibrational analyses of the ground state conformer of each tautomeric form of 3DAU and 6AU were done and their optimized geometry parameters(bond lengths and bond angles)were given.Furthermore,from the correlations values it was concluded that the B3LYP method is superior to the HF method for both the vibrational frequencies and the geometric parameters.展开更多
Thermodynamic and kinetic properties of the tautomerism of an indoline spiropyran in compressed CO2-ethanol mixture were studied by UV-Vis spectroscopy at 298.15 K, 303. 15 K, and 308.15 K. It was found that the compo...Thermodynamic and kinetic properties of the tautomerism of an indoline spiropyran in compressed CO2-ethanol mixture were studied by UV-Vis spectroscopy at 298.15 K, 303. 15 K, and 308.15 K. It was found that the composition of the mixture affects the equilibrium constant and the rate constant significantly.展开更多
Introduction Thioformamide plays an important role in the organic and biochemical processes. Up to now, there are some reports on the static state study of its thione and thiol form tautumors, but few papes on the mec...Introduction Thioformamide plays an important role in the organic and biochemical processes. Up to now, there are some reports on the static state study of its thione and thiol form tautumors, but few papes on the mechanism of tautomerism between these two tautomors. Since this tautomerism equilibrium may model the proton shift isomerization of thionucleic acid bases approximately, the theoretical study on the mechanism and dynamics of such a process has important significance.展开更多
The effect of cosolvent cyclohexane, chloroform, and acetonitrile on the keto-enol tautomeric equilibrium of ethyl acetoacetate in supercritical CO2 was studied by UV-Vis spectroscopy over the pressure range from 76 t...The effect of cosolvent cyclohexane, chloroform, and acetonitrile on the keto-enol tautomeric equilibrium of ethyl acetoacetate in supercritical CO2 was studied by UV-Vis spectroscopy over the pressure range from 76 to 110 bar at 308.15 K. It was found that the equilibrium constant decreases with increasing polarity of the cosolvents.展开更多
Tautomeric forms of Thiosemicarbazones have been investigated by spectrometric methods, their chemical reactivity and theoretical calculations of the relative tautomers stabilities. The mass spectral fragmentation of ...Tautomeric forms of Thiosemicarbazones have been investigated by spectrometric methods, their chemical reactivity and theoretical calculations of the relative tautomers stabilities. The mass spectral fragmentation of thiosemicarbazones synthesized from acetophenones has been studied by CG/MS. The analysis of the corresponding spectra shows not only the regular fragmentation mechanisms but homolytic ruptures from even-electron species. 1H NMR spectra exhibit signals for the most intense open thioketo tautomeric structure, although when using TFA a ring structure is observed in the corresponding tautomeric equilibrium. Density Functional Theory calculations (DFT) also provide evidence to support the experimental observations by GC-MS and 1H NMR. Methylation reactions give support to the occurrence of the thioenol tautomeric form which would be the second most abundant according to the Density Functional Theoretical calculations.展开更多
The potential energy surface of H(13) proton in base cytosine of the DNA molecules is calculated at the Caussian 98 MP2/6-311C(d,p) level. Two potential wells are found. One corresponds to the normal cytosine, whi...The potential energy surface of H(13) proton in base cytosine of the DNA molecules is calculated at the Caussian 98 MP2/6-311C(d,p) level. Two potential wells are found. One corresponds to the normal cytosine, while the other corresponds to its trans-imino tautomer. The estimated tunneling probability of the H(13) proton from one well to another well shows that the life time of the proton staying in one of these wells is about 600 yrs. It is too long to let tautomers of cytosine be in thermodynamical equilibrium in a room temperature gas phase experiment.展开更多
To elucidate the reaction mechanism from wobble Guanine-Thymine (wG-T) to tautomeric G-T base-pairs, we investigate its transition state (TS) by density functional theory (DFT) calculations, in vacuum and in water app...To elucidate the reaction mechanism from wobble Guanine-Thymine (wG-T) to tautomeric G-T base-pairs, we investigate its transition state (TS) by density functional theory (DFT) calculations, in vacuum and in water approximated by continuum solvation model. From the comparison of these results, we attempt to elucidate the effect of solvation on the tautomeric reaction for wG-T. In addition, the same DFT calculations are performed for the canonical G-C base-pair, in order to reveal the difference in the activation energy for the reactions involving wG-T and G-C. The obtained TS structures between wG-T and G*-T/G-T* (asterisk is an enol-form of base) are almost the same in vacuum and in water. However, the activation energy is 16.6 and 19.1 kcal/mol in vacuum and in water, respectively, indicating that the effect of solvation enlarges the energy barrier for the reactions from wG-T to G-T*/G*-T. The activation energy for the tautomeric reaction from G-C to G*-C* is also evaluated to be 15.8 and 12.9 kcal/mol in vacuum and in water, respectively. Therefore, it is expected that the tautomeric reaction from wG-T to G*-T/G-T* can occur in vacuum with a similar probability as that from G-C to G*-C*. We furthermore investigate the TS structure for wG-BrU to reveal the effect of the BrU introduction into wG-T. The activation energy is 14.5 and 16.7 kcal/mol in vacuum and in water, respectively. Accordingly, the BrU introduction is found to increase the probability of the tautomeric reaction producing the enol-form G* and T* bases. Because G* prefers to bind to T rather than to C, and T* to G not A, our calculated results reveal that the spontaneous mutation from C to T or from A to G bases is accelerated by the introduction of wG-BrU base-pair.展开更多
Tautomers are structural isomers that readily interconvert and may exhibit diff erent properties.The eff ect of solvent on tautomeric equilibria in solution has been a subject of some research.Tautomer solvate is less...Tautomers are structural isomers that readily interconvert and may exhibit diff erent properties.The eff ect of solvent on tautomeric equilibria in solution has been a subject of some research.Tautomer solvate is less common,and the role of solvent in the crystallization of tautomer solvate remains an interesting topic.In this work,we used 6-amino-1,3-dimethyl-5-nitrosouracil(NAU)as the tautomeric model material,which can present in nitrone–enamine form(Tautomer A)or oxime–imine form(Tautomer B).A solvate with NAU/DMSO ratio of 1:1 was discovered and characterized using single/powder X-ray diff raction and thermogravimetry.The crystal structure of NAU·DMSO was determined for the fi rst time,where only Tautomer A was formed in the tautomeric crystal.Quantum chemical calculation and molecular dynamics simulation were conducted to determine the tautomeric form in DMSO solution.Electrostatic potential analysis,radial distribution function analysis,and binding energy suggested possible DMSO–NAU interaction modes and stable tautomer complexes in solution.Tautomer A-containing complexes were found to dominate in solution,as verifi ed by comparing predicted and experimental 1 H NMR spectra.Findings reveal that the hydrogen bonding between DMSO and NAU is similar in solution and in NAU–DMSO solvate crystal,which helps preserve the form of Tautomer A during solvate crystallization.展开更多
Benzoxazoline ring substituted ketene N,O-acetals 3 were synthesized by the reaction of ketene S,S-acetals 2 with 2-aminophenol.The tautomeric equilibrium of some 3 was also observed.
A study of the influence of magnetic field on the tautomerism, the authors proposed a new method for predicting possible new intra- and intermolecular rearrangements due to tautomerism. The authors have proposed a gen...A study of the influence of magnetic field on the tautomerism, the authors proposed a new method for predicting possible new intra- and intermolecular rearrangements due to tautomerism. The authors have proposed a general mechanism of possible rearrangements and tautomerism.展开更多
Substituent, temperature and solvent effects on tautomeric equilibria in several β-ketoamides have been investigated by means of nuclear magnetic resonance spectroscopy (NMR). Keto-enol equilibrium predominates over ...Substituent, temperature and solvent effects on tautomeric equilibria in several β-ketoamides have been investigated by means of nuclear magnetic resonance spectroscopy (NMR). Keto-enol equilibrium predominates over the amide-imidol one. The relative stability of the individual tautomers and the corresponding equilibrium shifts are explained considering electronic and steric effects and tautomer stabilization via internal hydrogen bonds. In solution, these compounds exist mainly as ketoamide and Z-enolamide tautomers, both presenting intramolecular hydrogen bonds.展开更多
基金the National Natural Science Foundation of China(52276189,52106241)Natural Science Foundation of Jiangsu Province(BK20221248)for financial support。
文摘Bimolecular interactions play crucial roles in lignin pyrolysis.The tautomerization of key intermediates has a significant impact on the formation of stable products,whereas bimolecular tautomerization has been rarely clarified.In the present work,the bimolecular tautomerization mechanism induced by both concerted and radical interactions was proposed and carefully confirmed.A characteristicβ-O-4 lignin dimer,2-phenoxy-1-phenylethanol(α-OH-PPE),was used as the model compound to reveal two representative keto-phenol and enol-keto tautomerism mechanisms,based on theoretical calculations combined with pyrolysis experiments.The results indicate that the unimolecular tautomerism as the rate-determining step limits product generation,due to fairly high energy barriers.While the free hydroxy compounds and radicals derived from initial pyrolysis can further initiate bimolecular tautomerism reactions through the one-step concerted hydroxyl-assisted hydrogen transfer(hydroxylAHT)and two-step radical hydrogen abstraction interactions,respectively.By alleviating and even avoiding the large ring tension of tautomerism,the unstable tautomers(2,4-cyclohexadienone and1-hydroxy styrene)can be rapidly tautomerized into stable phenol and acetophenone with the help of intermolecular interaction.Benefitting from the significant advantage of retro-ene fragmentation in breaking theβ-O-4 bond to form tautomers,a large amount of stable phenolic and ketone products can be generated following bimolecular tautomerization in the pyrolysis ofβ-O-4 linked lignin.
文摘Introduction Organic compounds usually have labile bonds. It is well known that thousands of reactions are carried out in solutions, only a few in the gas-phase. Most chemists are now familiar with the fact that solvent may have a strong influence on reaction rate and equilibrium, so in the last decade, resarching the influence of solvent effects on reaction rate and reaction equilibrium was a very important and
基金Supported by the Special Research Fund for the Doctoral Program of Higher Education of China(No.20040010008)the Scientific Research Fund of Beijing University of Chemical Technology, China(No.QN0411).
文摘The hybrid calculations with ONIOM(B3LYP/6-31G*:AM1) method were carried out on the tautomerization reaction of formamide to formamidic acid in the microcontainer-encapsulated state. The free-state tautomerization process was also investigated with B3LYP/6-31G**//B3LYP/6-31G* method for the purpose of comparison. Bare tautomerization, H20-assisted(single-H20 or multiple-HaO) and self-assisted mechanisms were all taken into consideration for the encapsulated state. The results show that only bare tautomerization and single-H2O catalysis mechanisms are possible to the encapsulated formamide tautomerization owing to the container's size confinement effect. Geometrical changes in the complexed container and guest molecules are discussed to deeply understand the complex's structural properties. The bare tautomerization barrier in the encapsulated state increases by 23.826 kJ/mol, accounting for 12% of the corresponding total energy barrier in the free state, and the increased values for the single-H2O catalysis process are 12.958 kJ/mol, accounting for 16% of the corresponding total energy barrier, respectively. This finding suggests that the encapsulation can make the tautomerization process slightly difficult.
基金National Natural Science Foundation of China(Nos.21978079,and 21878078).
文摘It is important to study the solvent effect on keto-enol tautomerism that has applications in many areas of chemical engineering.In this work,we use a multiscale reaction density functional theory(Rx DFT)to study the keto-enol tautomerism and isomerization of pyruvic acid.The results show that both effects of solvation and water assistance could reduce the reaction barriers.The water molecule participates the reaction as a catalyst to accept/give the protons with forming a hexagonal ring in the transition state.As a result of this temporary and intermediate hexagonal ring,the solute configuration undergoes a small variation during the reaction,giving a diminished contribution to the intrinsic reaction free energy.The solvent distribution shows a local ordering behavior near the solute that also reduces the contribution of solvation effect to the reaction barrier.Water assistance plays a major role in both pre-reaction and postreaction process.In terms of the driving force for the reaction,the effects of both solvation and water assistance are important.
基金the National Natural Science Foundation of China(No.21875149)111 project(B17030)the Basal Research Fund of the Central University.
文摘The formation of humins hampers the large-scale production of 5-hydroxymethylfurfural(HMF)in biorefinery.Here,a detailed reaction network of humin formation at the initial stage of fructose-to-HMF dehydration in water is delineated by combined experimental,spectroscopic,and theoretical studies.Three bimolecular reaction pathways to build up soluble humins are demonstrated.That is,the intermolecular etherification of β-furanose at room temperature initiates the C12 path,whereas the C-C cleavage of a-furanose at 130-150℃ leads to C11 path,and that of open-chain fructose at 180℃ to C11' path.The successive intramolecular dehydrations and condensations of the as-formed bimolecular intermediates lead to three types of soluble humins.We show that the C12 path could be restrained by using HCl or AlCl_(3) catalyst,and both the C12 and C110 paths could be effectively inhibited by adding THF as a co-solvent or accelerating heating rate via microwave heating.
文摘The enamines, iminium ions, and oxazolidinones are thought to be the key intermediates in the proline-catalyzed reactions of aldehydes or ketones, but there is an extensive contro- versy about their roles. Here, the corresponding transition states connecting any two of the three kinds of species are located at the wB97XD/6-311++G** level of theory. The calcula- tions demonstrate that the oxazolidinones are the predominant species in both the gas phase and solvents; there exists tautomeric equilibrium among these species and the equilibriums are controlled by the employed solvents and temperature in the reaction. These results demonstrate that the concentration and role of the mentioned species are controlled by the employed solvent and temperature. A new reaction pathway is presented herein for the trans- formation between iminium ions and oxazolidinones through iminium ion-water complex and oxazolidinone-water complex. The calculations demonstrate that the rate-limiting step in proline-catalyzed Mannich reaction between acetaldehyde/keteones and N-Boc imines is the formation of the C-C bond rather than the intermediates tautomerization. These calculations rationalize the available experimental observations and can be valuable in optimizing the experimental conditions of asymmetric organic-catalyzed reactions of aldehydes or ketones.
基金supported by Research Fund of the Erzincan University(Project no:FEN-A-150615-0149)
文摘The ground state hydrogen conformations and vibrational analysis of 3-deazauracil(3DAU)and 6-azauracil(6AU)tautomers(4-enol and 2,4-diol forms)have been calculated using ab initio Hartree-Fock(HF)and density functional theory(B3LYP)methods with 6-311++G(d,p)basis set level.The calculations have shown that the most probably preferential tautomer of 3DAU and 6AU are the 4-enol form,which gives best fit to the corresponding experimental data.The ground state conformer of the 2,4-diol form has two O—H bonds which are oriented externally and internally(to the N—H bond).The vibrational analyses of the ground state conformer of each tautomeric form of 3DAU and 6AU were done and their optimized geometry parameters(bond lengths and bond angles)were given.Furthermore,from the correlations values it was concluded that the B3LYP method is superior to the HF method for both the vibrational frequencies and the geometric parameters.
文摘Thermodynamic and kinetic properties of the tautomerism of an indoline spiropyran in compressed CO2-ethanol mixture were studied by UV-Vis spectroscopy at 298.15 K, 303. 15 K, and 308.15 K. It was found that the composition of the mixture affects the equilibrium constant and the rate constant significantly.
基金Supported by the National Natural Science Foundation of China
文摘Introduction Thioformamide plays an important role in the organic and biochemical processes. Up to now, there are some reports on the static state study of its thione and thiol form tautumors, but few papes on the mechanism of tautomerism between these two tautomors. Since this tautomerism equilibrium may model the proton shift isomerization of thionucleic acid bases approximately, the theoretical study on the mechanism and dynamics of such a process has important significance.
基金This work was financially support by National Basic Research Project(G2000048010).
文摘The effect of cosolvent cyclohexane, chloroform, and acetonitrile on the keto-enol tautomeric equilibrium of ethyl acetoacetate in supercritical CO2 was studied by UV-Vis spectroscopy over the pressure range from 76 to 110 bar at 308.15 K. It was found that the equilibrium constant decreases with increasing polarity of the cosolvents.
文摘Tautomeric forms of Thiosemicarbazones have been investigated by spectrometric methods, their chemical reactivity and theoretical calculations of the relative tautomers stabilities. The mass spectral fragmentation of thiosemicarbazones synthesized from acetophenones has been studied by CG/MS. The analysis of the corresponding spectra shows not only the regular fragmentation mechanisms but homolytic ruptures from even-electron species. 1H NMR spectra exhibit signals for the most intense open thioketo tautomeric structure, although when using TFA a ring structure is observed in the corresponding tautomeric equilibrium. Density Functional Theory calculations (DFT) also provide evidence to support the experimental observations by GC-MS and 1H NMR. Methylation reactions give support to the occurrence of the thioenol tautomeric form which would be the second most abundant according to the Density Functional Theoretical calculations.
基金The project supported by National Natural Science Foundation of China under Grant Nos. 10305001 and 10475002 with the calculations supported by the High Performance Computing Center of China (Beijing)
文摘The potential energy surface of H(13) proton in base cytosine of the DNA molecules is calculated at the Caussian 98 MP2/6-311C(d,p) level. Two potential wells are found. One corresponds to the normal cytosine, while the other corresponds to its trans-imino tautomer. The estimated tunneling probability of the H(13) proton from one well to another well shows that the life time of the proton staying in one of these wells is about 600 yrs. It is too long to let tautomers of cytosine be in thermodynamical equilibrium in a room temperature gas phase experiment.
文摘To elucidate the reaction mechanism from wobble Guanine-Thymine (wG-T) to tautomeric G-T base-pairs, we investigate its transition state (TS) by density functional theory (DFT) calculations, in vacuum and in water approximated by continuum solvation model. From the comparison of these results, we attempt to elucidate the effect of solvation on the tautomeric reaction for wG-T. In addition, the same DFT calculations are performed for the canonical G-C base-pair, in order to reveal the difference in the activation energy for the reactions involving wG-T and G-C. The obtained TS structures between wG-T and G*-T/G-T* (asterisk is an enol-form of base) are almost the same in vacuum and in water. However, the activation energy is 16.6 and 19.1 kcal/mol in vacuum and in water, respectively, indicating that the effect of solvation enlarges the energy barrier for the reactions from wG-T to G-T*/G*-T. The activation energy for the tautomeric reaction from G-C to G*-C* is also evaluated to be 15.8 and 12.9 kcal/mol in vacuum and in water, respectively. Therefore, it is expected that the tautomeric reaction from wG-T to G*-T/G-T* can occur in vacuum with a similar probability as that from G-C to G*-C*. We furthermore investigate the TS structure for wG-BrU to reveal the effect of the BrU introduction into wG-T. The activation energy is 14.5 and 16.7 kcal/mol in vacuum and in water, respectively. Accordingly, the BrU introduction is found to increase the probability of the tautomeric reaction producing the enol-form G* and T* bases. Because G* prefers to bind to T rather than to C, and T* to G not A, our calculated results reveal that the spontaneous mutation from C to T or from A to G bases is accelerated by the introduction of wG-BrU base-pair.
基金The authors thank the fi nancial support from the National Natural Science Foundation of China(No.21776204).
文摘Tautomers are structural isomers that readily interconvert and may exhibit diff erent properties.The eff ect of solvent on tautomeric equilibria in solution has been a subject of some research.Tautomer solvate is less common,and the role of solvent in the crystallization of tautomer solvate remains an interesting topic.In this work,we used 6-amino-1,3-dimethyl-5-nitrosouracil(NAU)as the tautomeric model material,which can present in nitrone–enamine form(Tautomer A)or oxime–imine form(Tautomer B).A solvate with NAU/DMSO ratio of 1:1 was discovered and characterized using single/powder X-ray diff raction and thermogravimetry.The crystal structure of NAU·DMSO was determined for the fi rst time,where only Tautomer A was formed in the tautomeric crystal.Quantum chemical calculation and molecular dynamics simulation were conducted to determine the tautomeric form in DMSO solution.Electrostatic potential analysis,radial distribution function analysis,and binding energy suggested possible DMSO–NAU interaction modes and stable tautomer complexes in solution.Tautomer A-containing complexes were found to dominate in solution,as verifi ed by comparing predicted and experimental 1 H NMR spectra.Findings reveal that the hydrogen bonding between DMSO and NAU is similar in solution and in NAU–DMSO solvate crystal,which helps preserve the form of Tautomer A during solvate crystallization.
基金This work was supported by the National Natural Science Foundation of China
文摘Benzoxazoline ring substituted ketene N,O-acetals 3 were synthesized by the reaction of ketene S,S-acetals 2 with 2-aminophenol.The tautomeric equilibrium of some 3 was also observed.
文摘A study of the influence of magnetic field on the tautomerism, the authors proposed a new method for predicting possible new intra- and intermolecular rearrangements due to tautomerism. The authors have proposed a general mechanism of possible rearrangements and tautomerism.
文摘Substituent, temperature and solvent effects on tautomeric equilibria in several β-ketoamides have been investigated by means of nuclear magnetic resonance spectroscopy (NMR). Keto-enol equilibrium predominates over the amide-imidol one. The relative stability of the individual tautomers and the corresponding equilibrium shifts are explained considering electronic and steric effects and tautomer stabilization via internal hydrogen bonds. In solution, these compounds exist mainly as ketoamide and Z-enolamide tautomers, both presenting intramolecular hydrogen bonds.