Coffee Leaf Rust(Hemileia vastatrix)Disease in Coffee Plants and Perspectives by the Disease Control

Coffee Leaf Rust(CLR)is caused by Hemileia vastatrix in Coffea spp.It is one of the most dangerous phytopathogens for coffee plantations in terms of coffee productivity and coffee cup quality.In this review,we resume the problem of CLR in Mexico and the pathogenesis of H.vastatrix.The review abord plant-pathogen interactions which lead a compatible or incompatible interactions and result in CLR disease or resistance,respectively.The review abord Coffea spp.defense response pathways involved in H.vastatrix pathogenicity.Additionally,current measures to control H.vastatrix proliferation and germination were aborded focused on phytosanitary actions,and biological and chemical control.Finally,new trendlines to reduce the impact of CLR as nanoparticles and nanotechnology were analyzed.

Identification of Hyperparasitic Fungal Species Associated with Coffee Leaf Rust

[Objectives]The paper was to elucidate the specific hyperparasitic fungal species that are associated with coffee leaf rust.[Methods]Tissue isolation,sample humidification,and three-point inoculation techniques were employed to isolate,culture,and purify the hyperparasitic fungi responsible for coffee leaf rust.The purified strains were identified using traditional morphological techniques and molecular biology methods.[Results]Four strains were isolated,specifically BS21(Cladosporium cladosporioides),BS34(C.tenuissimum),BS62(C.cladosporioides),and BS75(C.colombiae).[Conclusions]The findings of this research will contribute novel insights into the biological control of coffee leaf rust.

Integrated Prevention and Control Technology for Coffee Leaf Rust in Yunnan Province

This paper investigates the damage symptoms and occurrence regularity related to coffee leaf rust,and proposes a comprehensive prevention and control strategy grounded in the principle of prioritizing prevention and implementing integrated prevention and control.This strategy encompasses the cultivation of rust-resistant varieties,the implementation of agricultural practices,the application of chemical interventions,the utilization of hyperparasitic fungi,and the protection and utilization of natural enemies.The paper further outlines the necessary requirements for effective prevention and control,emphasizing the importance of enhancing responsibility implementation,fostering systematic prevention and control measures,enhancing guidance services,and increasing publicity and guidance.The aim is to offer technical guidance for the integrated prevention and control of coffee leaf rust in Yunnan Province.

Postulation of seedling leaf rust resistance genes in 84 Chinese winter wheat cultivars

Wheat leaf rust（caused by Puccinia triticina） is one of the most important fungal diseases in China. There are tens of winter wheat cultivars which are approved to be released by the government at a national level and more than 100 wheat cultivars at the provincial level. But there is no information about leaf rust（Lr） genes in these cultivars, which makes it difficult for farmers and breeders to select which cultivars they should plant in their fields and use in their breeding programs. The objective of this paper was to identify the leaf rust resistant genes at seedling stage present in the 84 commercial wheat cultivars from China that have been released in the past few years. A set of 20 near isogenic lines with Thatcher background and 6 lines with known Lr genes were used to test the virulence of 12 races of P. triticina（Pt）. By comparing the infection types（ITs） produced on the 84 cultivars by the 12 Pt races with the ITs on the differential sets, the Lr genes were postulated. In addition, 8 molecular markers of Lr genes such as Lr9, Lr10, Lr19, Lr20, Lr21, Lr24, Lr26 and Lr29, which are closely linked to or co-segregated with the Lr gene, were used for further validation of the genes in the 84 Chinese winter wheat cultivars. Twelve Lr genes, including Lr1, Lr3,（Lr3bg）,（Lr3ka）, Lr11, Lr13, Lr14 a, Lr16, Lr26, Lr27, Lr30 and Lr31 were postulated to be present either singly or in combinations in these Chinese wheat cultivars. Lr3 and Lr26 were detected most often in the tested cultivars, with frequencies of 51.2 and 38.1%, respectively. No wheat Lr genes were detected in 16 cultivars, and 4 cultivars may carry unknown Lr genes other than those used in this study. Lr9, Lr20, Lr21, Lr24, Lr25 and Lr29 were not present in any of the 84 tested accessions.

Identification and Molecular Tagging of Leaf Rust Resistance Gene (Lr24) in Wheat

This research was aimed to develop AFLP markers co-segregated with gene Lr24 and validate the using for marker assisted selection （MAS）. An F2 population developed from the cross between the resistant line TcLr24 and the susceptible line Thatcher was tested for resistance to the Puccinia triticina races BGQQ and SHRT using for genetic analysis and molecular marker. A total of 224 AFLP primer combinations were used to test the resistant and susceptible parents, as well as the resistant bulk and the susceptible bulk. Four AFLP markers, P-AGA/M-CTT289 bp, P-AGC/M-CAC1ss bp, P-AGC/M- CAC162 bp, and P-ACG/M-CGC239 bp, were co-segregated with Lr24. The AFLP fragment from the primer combination P- ACG/M-CGC was cloned, sequenced and converted into a STS marker named as ASTS212. Thatcher backgrounded NILs and 115 varieties were examined by using this STS marker and the marker SCS13026oz developed by Gupta. 5R615, 5R616, IR13, and 1R17 were identified and validated to contain gene Lr24. The marker is dominant and may be useful in identification the resistance gene Lr24 in wheat and wheat breeding programs.

A SSR Marker for Leaf Rust Resistance Gene Lr19 in Wheat

Microsatellite was carded out in Thatcher, six near-isogenic lines and F2 progeny of TcLr19xThatcher to develop molecular markers for leaf rust resistance gene Lr19. Thirteen primer pairs were screened, of which one primer pair Xgwm44 displayed polymorphsim in the population of TcLr 19, Thatcher, and their F2 generations. One marker closed linked to Lr19 resistance trait was obtained, and was named Xgwm44139bp with the genetic distance 0.9 cM. The research shows that Lr19 has more potential in marker-assisted breeding programs in wheat and provides a step stone for mapping genetic map, physical map and the eventual cloning.

Molecular mapping of leaf rust resistance genes in the wheat line Yu 356-9

The Chinese wheat line Yu 356-9 exhibits a high level of resistance to leaf rust. In order to decipher the genetic base of resistance in Yu 356-9, gene postulation, inheritance analyses, and chromosome linkage mapping were carried out. Gene postulation completed using 15 leaf rust pathotypes and 36 isogenic lines indicated that Yu 356-9 was resistant to all pathotypes tested. F1 and F2 plants from the cross Yu 356-9 （resistant）/Zhengzhou 5389 （susceptible） were tested with leaf rust pathotype ＂FHNQ＂ in the greenhouse. Results indicated a 3：1 segregation ratio, indicative of the presence of a single dominant leaf rust resistance gene in Yu 356-9 which was temporarily designated as LrYu. Bulk segregant analysis and molecular marker assays were used to map LrYu. Five simple sequence repeat （SSR） markers on chromosome 2BS were found closely linked to LrYu. Among these markers, Xwmc770 is the most closely linked, with a genetic distance of 5.7 cM.

Molecular Markers for Leaf Rust Resistance Gene Lr45 in Wheat Based on AFLP Analysis

Amplified fragment length polymorphism （AFLP） analysis was carried out in Thatcher, near isogenic lines （NILs） canting different genes conferring resistance against wheat leaf rust, and TcLr45 × Thatcher F2 progenies were used to develop markers for Lr45 gene. Sixty AFLP primer combinations were screened and most of them provided clear amplification products, 31 primer combinations displayed polymorphism of TcLr45 in 23 NILs. Two AFLP markers closely linked to the gene Lr45 were acquired： P-AGG/M-GAG261bp, which was found closely linked to the Lr45 locus at a distance of 0.6 cM on one side, and P-ACA/M-GGT105bp, which was found at a distance of 1.3 cM on the other side. The specific hands were cloned and subsequently sequenced. The 261-bp fragment produced by P-AGG/M-GAG showed 86% similarity with the sequence of Vulgate Hort I gene; the 105-bp fragment produced by P-ACA/M-GGT showed 96% similarity with the phosphatidylserine decarboxylase gene of the Triticum monococcum. Both included an open reading frame （ORF）.

Advances in Localization and Molecular Markers of Wheat Leaf Rust Resistance Genes

Genetic resistance is the most economical method of reducing yield losses caused by wheat leaf rust. To identify the leaf rust resistance genes in commonly used parental germplasm and released cultivars become very important for utilizing the genetic resistance to wheat leaf rust fully. Up to date, about 90 leaf rust resistance genes have been found, of which 51 genes have been located and mapped to special chromosomes, and 56 genes have been designated officially according to the standards set forth in the Catalogue of Gene Symbols for wheat. Twenty-four wheat leaf rust resistance genes have been developed for their molecular markers. It is very important to isolate, characterize, and map leaf rust resistance genes due to the resistance losses of the genes caused by the pathogen continuously.

Wheat Yield Response to Foliar Fungicide Application against Leaf Rust Caused by Puccinia triticina

A study was conducted on reducing the yield loss of wheat due to leaf rust caused by Puccinia triticina with foliar application of fungicides during the 2014-2015 and 2015-2016 growing seasons at the Wheat Research Institute in Faisalabad, Pakistan. Three fungicides： Folicur （tebuconazole） at 300 mL/ha, Nativo （tebuconazole ＋ trifloxystrobin） at 300 g/ha and Tilt （propiconazole） at 500 mL/ha were applied single or two times to Morocco and Sehar-06 wheat varieties used in the trial. The trial plots were first sprayed at the Zadok＇s scale （ZS） 3 stage and second sprayed between ZS 4.3 and 5.4 stages. The greenness of the trial crop was measured using GreenSeeker. Foliar application of fungicides significantly reduced the loss of grain yield and 1,000-grain weight （TGW） of wheat due to leaf rust in comparison to the control without fungicides application. Of the three fungicides, two times spray of Nativo reduced the grain yield loss of leaf rust susceptible mega wheat variety Sehar-06 by 45%-56% and the loss of TGW by 42%, also giving the highest marginal return in the trial. Single application of Nativo was equally effective as two times spray of Folicur in reducing the loss of wheat grain yield. Two times spray of Folicur was found to be the second choice of fungicide for reducing the yield loss of wheat. The research identified suitable fungicides for reducing the yield loss of wheat due to leaf rust and also generated important scientific knowledge required to manage a sudden outbreak of leaf rust to ensure food security.

Seedling and adult plant resistance to leaf rust in 46 Chinese bread wheat landraces and 39 wheat lines with known Lr genes

Wheat leaf rust,caused by Puccinia triticina(Pt),is an important foliar disease that has an important influence on wheat yield.The most economic,safe and effective way to control the disease is growing resistant cultivars.In the present study,a total of 46 wheat landraces and 34 wheat lines with known Lr(leaf rust resistance)genes were inoculated with 16Pt pathotypes for postulating seedling resistance gene(s)in the greenhouse.These cultivars and five wheat differential lines with adult plant resistance(APR)genes(Lr12,Lr22b,Lr34,Lr35 and Lr37)were also evaluated for identification of slow rusting resistance in the field trials in Baoding,Hebei Province of China in the 2014–2015 and 2015–2016 cropping seasons.Furthermore,10 functional molecular markers closely linked to 10 known Lr genes were used to detect all the wheat genotypes.Results showed that most of the landraces were susceptible to most of the Pt pathotypes at seedling stage.Nonetheless,Lr1 was detected only in Hongtangliangmai.The field experimental test of the two environments showed that 38 landraces showed slow rusting resistance.Seven cultivars possessed Lr34 but none of the landraces contained Lr37 and Lr46.Lr genes namely,Lr9,Lr19,Lr24,Lr28,Lr29,Lr47,Lr51 and Lr53 were effective at the whole plant stage.Lr18,Lr36 and Lr45 had lost resistance to part of pathotypes at the seedling stage but showed high resistance at the adult plant stage.Lr34 as a slowing rusting gene showed good resistance in the field.Four race-specific APR genes Lr12,Lr13,Lr35 and Lr37 conferred good resistance in the field experiments.Seven race-specific genes,Lr2b,Lr2c,Lr11,Lr16,Lr26,Lr33 and LrB had lost resistance.The 38 landraces showed slow rusting resistance to wheat leaf rust can be used as resistance resources for wheat resistance breeding in China.

Identification of AFLP Markers Linked to Leaf Rust Resistance Genes Using Near Isogenic Lines of Wheat

The present investigation was undertaken to find molecular markers linked to leaf rust resistance genes, Lr9 and Kharchia local mutant KLM4-3B. Preliminary AFLP analysis was carried out with different stocks, a survey of primer combinations with different selective nucleotide indicated that for each primer combination, the number of scorable loci ranged from 34 to 123. Only a limited primer combination used in the set of parental and near isogenic lines showed a high level of polymorphism for AFLP marker. Putative AFLP marker were found to be linked to Lr9, Lr19 and KLM4-3B. The alien genes were readily identified.

Molecular Genetic Diversity in Iranian Populations of <i>Puccinia triticina</i>, the Causal Agent of Wheat Leaf Rust

Wheat leaf rust caused by Puccinia triticina, is the most common and widely distributed wheat rust in the world. In order to study the genetic structure of leaf rust population 14 pairs of AFLP and 6 pairs of FAFLP primers evaluated on 86 isolates samples collected in Iran during spring of 2009. Results showed that almost all investigated isolates were genetically different and special pattern of AFLP allele’s that confirm high genetic diversity within leaf rust population was observed. Analyses showed, all provinces were classified into three major groups particularly similar clusters were found between then neighboring provinces. Rust spore can follow the migration pattern in short and long distances to neighbor in provinces. Results indicated that the greatest variability was revealed by 97% of genetic differentiation within leaf rust populations and the lesser variation of 3% was observed between the rust populations. These results suggested that each population was not completely identical and high gene flow has occurred among the leaf rust population of different provinces. The highest differentiation and genetic distance among the Iranian leaf rust populations was detected between leaf rust population in Sistan and Baluchistan and highest similarity was observed between in Ardabil provinces. The high pathogenic variability of leaf rust races in Ardabil and Northern Khorasan may be an indication that these two regions are the center of origin of pathogenic arability. Present study shows that leaf rust population in Iran is highly dynamic and variable.

PCR-based molecular markers linked to the leaf rust resistance gene Lr19 in different bread wheat cultivars

61 varieties of wheat collected in the gene fund of the Research Institute of Crop Husbandry were screened using SCAR-markers associated with the gene of resistance to brown leaf rust, Lr19. As a result of PCR analysis using SCS123 marker the 737 bp locus was detected in 48 genotypes. The expected fragment of the 688 bp was detected in 53 genotypes using the SCS253 marker. The results obtained using both markers indicate that the Lr19 gene is present on 7D chromosomes of 45 genotypes. The existence of the Lr19 gene has not been proven only for 5 from the 61 analyzed wheat genotypes.

Phenotypic and Molecular Characterization of Wheat Leaf Rust Resistance Gene <i>Lr34</i>in Iranian Wheat Cultivars and Advanced Lines

Lr34 is a vital gene in developing resistance to leaf rust, stripe rust, and powdery mildew of wheat. Providing simultaneous resistance to various pathogens has made this gene valuable in breeding for wheat resistance to many diseases. The present study investigates the csLV34 marker’s capability in diagnosing this locus in130 wheat commercial cultivars and advanced wheat lines from Iran, and assesses the impact of this gene on disease severity in field conditions. To assess the reactions of cultivars and lines which contained Lr34 under epidemic conditions of leaf rust, these cultivars were cultivated during the 2009 and 2010 cropping season. Of the 130 studied cultivars, 43 contained Lr34. Cultivars that were selected and studied in stress conditions had the most frequent presence of Lr34. It can be concluded that this gene plays a vital role in increasing the tolerance of cultivars under stress conditions. Lr34 seems to cause active transition of materials out of the cell. In addition to being resistant to several important diseases of wheat, Lr34 can increase tolerance to stresses such as salinity. Considering the calculated value for AUDPC (3%-440%/d) in cultivars containing Lr34, it seems that some cultivars contained additional resistance genes. The rate of infection in all cultivars, when presence of Lr34 was detected through the molecular marker, was lower than in other cultivars. Field results confirmed the results of the analysis using the csLV34b molecular marker.

Phenotypic and Molecular Assessment of Wheat Genotypes Tolerant to Leaf Blight,Rust and Blast Diseases

Globally among biotic stresses,diseases like blight,rust and blast constitute prime constraints for reducing wheat productivity especially in Bangladesh.For sustainable productivity,the development of disease-resistant lines and high yielding varieties is vital and necessary.This study was conducted using 122 advanced breeding lines of wheat including 21 varieties developed by Bangladesh Wheat and Maize Research Institute with aims to identify genotypes having high yield potential and resistant to leaf blight,leaf rust and blast diseases.These genotypes were evaluated for resistance against leaf blight and leaf rust at Dinajpur and wheat blast at Jashore under field condition.Out of 122 genotypes tested,20 lines were selected as resistant to leaf blight based on the area under the diseases progress curve under both irrigated timely sown and irrigated late sown conditions.Forty-two genotypes were found completely free from leaf rust infection,59 genotypes were identified as resistant,and 13 genotypes were identified as moderately resistant to leaf rust.Eighteen genotypes were immune against wheat blast,42 genotypes were categorized as resistant,and 26 genotypes were identified as moderately resistant to wheat blast.Molecular data revealed that the 16 genotypes showed a positive 2NS segment among the 18 immune genotypes selected against wheat blast under field conditions.The genotypes BAW 1322,BAW 1295,and BAW 1203 can be used as earlier maturing genotypes and the genotypes BAW 1372,BAW 1373,BAW 1297 and BAW 1364 can be used for lodging tolerant due to short plant height.The genotypes WMRI Gom 1,BAW 1349 and BAW 1350 can be selected for bold grain and the genotypes WMRI Gom 1,BAW 1297,BAW 1377 can be used as high yielder for optimum seeding condition but genotypes BAW 1377 and BAW 1366 can be used for late sown condition.The selected resistant genotypes against specific diseases can be used in the further breeding program to develop wheat varieties having higher disease resistance and yield potential.

A combination of leaf rust resistance gene Lr34 and lesion mimic gene lm significantly enhances adult plant resistance to Puccinia triticina in wheat

Leaf rust caused by Puccinia triticina is an economically-important disease in wheat worldwide.A combination of different types of resistance genes may significantly enhance rust resistance under rust-favorable conditions.To investigate the interactions between the rust resistance gene Lr34 and the lesion mimic gene lm on 1BL in Ning 7840,a segregating F8-10 population of 180 recombinant inbred lines was developed from Ning 7840/Chokwang and evaluated for both lesion mimic expression and leaf rust response at the adult plant stage in a greenhouse.A major quantitative trait locus(QTL),derived from Sumai 3,was co-localized with Lr34 on chromosome 7D and explained 41.5% of phenotypic variations for rust severity and 22.1% for leaf tip necrosis(LTN).The presence of Lr34 was confirmed by Lr34-specific markers cssfr1 and cssfr2 in Ning 7840 and Sumai 3.Unlike Lr34,lm conditioned a spontaneous lesion mimic phenotype and had a significant effect on reducing uredinial size,and a smaller effect on severity.Additive effects were observed between lm and Lr34 for severity and LTN,and an epistatic effect was observed for infection type.Single marker analysis also identified several other QTL with minor effects on severity,infection type,or LTN.

Infrared Spectroscopic Study of Fistular Onion (Allium fistulosum) and Garlic (Allium sativum) Rust Leaves

[ Objective] Fourier transform infrared spectroscopy was used to study fistular onion （Alliumfistulosum） and garlic （Allium sativum） rust leaves, so as to explore the application potential of mid-infrared spectroscopy in the diagnosis of crop disease. [ Method] The normal green leaves and rust leaves of fistular onion and garlic were tested using fourier transform infrared spectroscopy, and their spectral differences were analyzed. [ Result] The infrared spectra of green leaves of fistular onion and garlic are mainly composed of the vibrational bands of polysaccharides, protein and ester. Normal and rust leaves exhibited differences in the fin- gerprint interval of 1 800 -900 cm-1 , in which the band at 1 640 cm-1 in the spectrum of flstular onion rust leaf became stronger, and the band at 1 103 cm-1 was not obvious compared with the spectrum of normal leaf. The absorbance ratios A1640/A1063, A1640/A1736, A1640/A2924, and A1063/A2924 of onion rust leaf were larger than the corresponding ratios A1638/A1 059, A1738/A1 38, A2921/A1638, and A2 92l/A1059 in the spectrum of normal leaf. The band of polysaccharides at 1 056 cm-1 in the spectrmn of garlic normal leaf was the strongest in fingerprint area, while the band at 1 634 cm-1 in the spectrum of garlic rust leaf was the strongest in that are- a. The absorbance ratios A1634/A1069 , A1634/A1099 , A1409/A2923 , and A1634/A737 of garlic rust leaf were larger than the corresponding ratios A1627/A1056 , A1623/A1104 , A1411/A2920 and A1627/A1740 of normal leaves. While the ratios A1634/A2923, A1059/A2923, and A1737/A2923 of garlic rust leaf were less than the corresponding values of A1627/A2920, A1056/A2920, and A1 740/A2920 of normal leaf. [ Conclusion] Rust leaf and normal leaf could be distinguished according to the differences in infrared spectra, and infrared spectroscopy could be developed as the detection method for crop diseases.

Status and strategies in breeding for rust resistance in wheat

Wheat along with rice and maize is fulfilling half of the calories demands of the world. Global Wheat production has increased tremendously since green revolution in 1960’s and helped in minimizing hunger and malnutrition. Developing countries, which consume 60% of the global wheat production, have shown a higher yield increase than the developed countries in the past [1]. It was driven by the hunger prevalence in these countries and was attributable to the introduction of high yielding and rusted resistant semi dwarf varieties developed under the collaborative efforts of International and National research systems during the last 50 years. Whereas, climate change and the emergence of new pests and diseases are threatening the food sustainability. The evolution of new races of disease pathogens like stem rust (Ug 99) is of serious concern. In order to feed the ever increasing population we have to increase wheat production at the rate 1.6% which can be achieved by developing high yielding varieties having a good tolerance level for biotic and abiotic stresses.

基于轻量级密集多尺度注意力网络的小麦叶部锈病识别方法

人工诊断小麦锈病成本高、效率低,已无法满足现代农业生产的需要。本文提出了一种轻量级密集多尺度注意力网络模型(Mobile-Dense multi-scale attention net,Mobile-DMSANet),用于自动识别田间自然场景中的小麦叶部锈病(条锈病和叶锈病)。该模型在输入层设计了一个快速下采样模块(Fast subsampling block,FSB),它在不增加计算成本的前提下提高模型的特征表达能力。模型的特征提取层使用3个轻量级特征提取模块(Dense multiscale attention,DMS A)来提取小麦叶部锈病的特征。DMS A模块设计了一个多尺度的3路卷积层(Multi-scale threeway convolution,MSTC)用于获得不同尺度感受野,以提高模型的表达能力和对不同尺寸锈病的感知能力。DMSA模块中6个MSTC层通过密集连接实现特征重用,不仅大大减少了模型的参数量,而且提高了对这两种相似的小麦叶部锈病的特征提取能力。在DMSA模块中还引入了协调注意力机制(Coordinated attention,CA),来提高对病害信息的敏感性,并抑制图像中的背景信息。模型的输出层使用Softmax函数实现小麦叶部锈病识别。结果表明,Mobile-DMSANet模型在测试数据集上的识别准确率为96.4%,高于经典CNN模型(如ResNet50、AlexNet)和轻量级CNN模型(如ShufflenetV2、DenseNet系列)。Mobile-DMSANet参数量为4.54×10^(5),与其他轻量级模型相比大幅下降。本文所设计模型可用于移动端小麦叶部锈病的自动识别。