Population genomic data reveal low genetic diversity,divergence and local adaptation among threatened Reeves's Pheasant(Syrmaticus reevesii)

Population genomic data could provide valuable information for conservation efforts;however,limited studies have been conducted to investigate the genetic status of threatened pheasants.Reeves’s Pheasant(Syrmaticus reevesii)is facing population decline,attributed to increases in habitat loss.There is a knowledge gap in understanding the genomic status and genetic basis underlying the local adaptation of this threatened bird.Here,we used population genomic data to assess population structure,genetic diversity,inbreeding patterns,and genetic divergence.Furthermore,we identified candidate genes linked with adaptation across the current distribution of Reeves’s Pheasant.The present study assembled the first de novo genome sequence of Reeves’s Pheasant and annotated 19,458 genes.We also sequenced 30 individuals from three populations(Dabie Mountain,Shennongjia,Qinling Mountain)and found that there was clear population structure among those populations.By comparing with other threatened species,we found that Reeves’s Pheasants have low genetic diversity.Runs of homozygosity suggest that the Shennongjia population has experienced serious inbreeding.The demographic history results indicated that three populations experienced several declines during the glacial period.Local adaptative analysis among the populations identified 241 candidate genes under directional selection.They are involved in a large variety of processes,including the immune response and pigmentation.Our results suggest that the three populations should be considered as three different conservation units.The current study provides genetic evidence for conserving the threatened Reeves’s Pheasant and provides genomic resources for global biodiversity management.

Adaptive Cascaded High-Resolution Source Localization Based on Collaboration of Multi-UAVs

Effective information fusion is very important in hybrid source localization. In this paper, the performance analysis of conventional joint direction of arrival(DOA) and time difference of arrival(TDOA) system is derived and it is shown that this hybrid system may inferior to the single system when the ratio of angular measurements error to distance measurements error exceeds a threshold. To avoid this problem, an effective DOA/TDOA adaptive cascaded(DTAC) technique is presented. The rotation feature of UAVs and spatial filtering technique are applied to gain the signal-to-noise ratio(SNR), which leads to more accurate estimation of time delay by using DOAs. Nevertheless, the time delay estimation precision is still limited by the sampling frequency, which is constrained by the finite load of UAV. To break through the limitation, an enhanced self-delay-compensation(SDC) method is proposed, which aims at detecting the overlooked time delay within the sampling interval by adding a tiny time delay. Finally, the position of the source is estimated by the Chan algorithm. Compared to DOA-only algorithm, TDOA-only algorithm and joint DOA/TDOA(JDT) algorithm, the proposed method shows better localization accuracy regardless of different SNRs and sampling frequencies. Numerical simulations are presented to validate the effectiveness and robustness of the proposed algorithm.

ADAPTIVE MESHLESS METHOD BASED ON LOCAL FIT TECHNOLOGY

An h-adaptive meshless method is proposed in this paper. The error estimation is based on local fit technology, usually confined to Voronoi Cells. The error is achieved by comparison of the computational results with smoothed ones, which are projected with Taylor series. Voronoi Cells are introduced not only for integration of potential energy but also for guidance of refinement. New nodes are placed within those cells with high estimated error. At the end of the paper, two numerical examples with severe stress gradient are analyzed. Through adaptive analysis accurate results are obtained at critical subdomains, which validates the efficiency of the method.

Global minimization of adaptive local image fitting energy for image segmentation

The active contour model based on local image fitting （LIF） energy is an effective method to deal with intensity inhomo- geneities, but it always conflicts with the local minimum problem because LIF has a nonconvex energy function form. At the same time, the parameters of LIF are hard to be chosen for better per- formance. A global minimization of the adaptive LIF energy model is proposed. The regularized length term which constrains the zero level set is introduced to improve the accuracy of the bound- aries, and a global minimization of the active contour model is presented, in addition, based on the statistical information of the intensity histogram, the standard deviation σ with respect to the truncated Gaussian window is automatically computed according to images. Consequently, the proposed method improves the performance and adaptivity to deal with the intensity inhomo- geneities. Experimental results for synthetic and real images show desirable performance and efficiency of the proposed method.

h-ADAPTIVE ANALYSIS BASED ON MESHLESS LOCAL PETROV-G ALERKIN METHOD WITH B SPLINE WAVELET FOR PLATES AND SHELLS

Using the two-scale decomposition technique, the h-adaptive meshless local Petrov- Galerkin method for solving Mindlin plate and shell problems is presented. The scaling functions of B spline wavelet are employed as the basis of the moving least square method to construct the meshless interpolation function. Multi-resolution analysis is used to decompose the field variables into high and low scales and the high scale component can commonly represent the gradient of the solution according to inherent characteristics of wavelets. The high scale component in the present method can directly detect high gradient regions of the field variables. The developed adaptive refinement scheme has been applied to simulate actual examples, and the effectiveness of the present adaptive refinement scheme has been verified.

Supervised local and non-local structure preserving projections with application to just-in-time learning for adaptive soft sensor

In soft sensor field, just-in-time learning(JITL) is an effective approach to model nonlinear and time varying processes. However, most similarity criterions in JITL are computed in the input space only while ignoring important output information, which may lead to inaccurate construction of relevant sample set. To solve this problem, we propose a novel supervised feature extraction method suitable for the regression problem called supervised local and non-local structure preserving projections(SLNSPP), in which both input and output information can be easily and effectively incorporated through a newly defined similarity index. The SLNSPP can not only retain the virtue of locality preserving projections but also prevent faraway points from nearing after projection,which endues SLNSPP with powerful discriminating ability. Such two good properties of SLNSPP are desirable for JITL as they are expected to enhance the accuracy of similar sample selection. Consequently, we present a SLNSPP-JITL framework for developing adaptive soft sensor, including a sparse learning strategy to limit the scale and update the frequency of database. Finally, two case studies are conducted with benchmark datasets to evaluate the performance of the proposed schemes. The results demonstrate the effectiveness of LNSPP and SLNSPP.

New Immersed Boundary Method on the Adaptive Cartesian Grid Applied to the Local Discontinuous Galerkin Method

Currently, many studies on the local discontinuous Galerkin method focus on the Cartesian grid with low computational e ciency and poor adaptability to complex shapes. A new immersed boundary method is presented, and this method employs the adaptive Cartesian grid to improve the adaptability to complex shapes and the immersed boundary to increase computational e ciency. The new immersed boundary method employs different boundary cells(the physical cell and ghost cell) to impose the boundary condition and the reconstruction algorithm of the ghost cell is the key for this method. The classical model elliptic equation is used to test the method. This method is tested and analyzed from the viewpoints of boundary cell type, error distribution and accuracy. The numerical result shows that the presented method has low error and a good rate of the convergence and works well in complex geometries. The method has good prospect for practical application research of the numerical calculation research.

Defocus Blur Segmentation Using Local Binary Patterns with Adaptive Threshold

Enormousmethods have been proposed for the detection and segmentation of blur and non-blur regions of the images.Due to the limited available information about blur type,scenario and the level of blurriness,detection and segmentation is a challenging task.Hence,the performance of the blur measure operator is an essential factor and needs improvement to attain perfection.In this paper,we propose an effective blur measure based on local binary pattern(LBP)with adaptive threshold for blur detection.The sharpness metric developed based on LBP used a fixed threshold irrespective of the type and level of blur,that may not be suitable for images with variations in imaging conditions,blur amount and type.Contrarily,the proposed measure uses an adaptive threshold for each input image based on the image and blur properties to generate improved sharpness metric.The adaptive threshold is computed based on the model learned through support vector machine(SVM).The performance of the proposed method is evaluated using two different datasets and is compared with five state-of-the-art methods.Comparative analysis reveals that the proposed method performs significantly better qualitatively and quantitatively against all of the compared methods.

Epidemic propagation on adaptive coevolutionary networks with preferential local-world reconnecting strategy

In the propagation of an epidemic in a population, individuals adaptively adjust their behavior to avoid the risk of an epidemic. Differently from existing studies where new links are established randomly, a local link is established preferentially in this paper. We propose a new preferentially reconnecting edge strategy depending on spatial distance （PR- SD）. For the PR-SD strategy, the new link is established at random with probability p and in a shortest distance with the probability 1 p. We establish the epidemic model on an adaptive network using Cellular Automata, and demonstrate the effectiveness of the proposed model by numerical simulations. The results show that the smaller the value of parameter p, the more difficult the epidemic spread is. The PR-SD strategy breaks long-range links and establishes as many short-range links as possible, which causes the network efficiency to decrease quickly and the propagation of the epidemic is restrained effectively.

Ideal Case Study of Adaptive Localization in Storm-scale Ensemble Kalman Filter Assimilation

This study explores the use of the hierarchical ensemble filter to determine the localized influence of observations in the Weather Research and Forecasting ensemble square root filtering(WRF-EnSRF)assimilation system.With error correlations between observations and background field state variables considered,the adaptive localization approach is applied to conduct a series of ideal storm-scale data assimilation experiments using simulated Doppler radar data.Comparisons between adaptive and empirical localization methods are made,and the feasibility of adaptive localization for storm-scale ensemble Kalman filter assimilation is demonstrated.Unlike empirical localization,which relies on prior knowledge of distance between observations and background field,the hierarchical ensemble filter provides continuously updating localization influence weights adaptively.The adaptive scheme improves assimilation quality during rapid storm development and enhances assimilation of reflectivity observations.The characteristics of both the observation type and the storm development stage should be considered when identifying the most appropriate localization method.Ultimately,combining empirical and adaptive methods can optimize assimilation quality.

Feature extraction of gear-localized defect using adaptive lifting scheme and local gradient maps

In this paper,the adaptive lifting scheme (ALS) and local gradient maps (LGM) are proposed to isolate the transient feature components from the gearbox vibration signals. Based on entropy minimization rule,the ALS is employed to change properties of an initial wavelet and design adaptive wavelet. Then LGM is applied to characterize the transient feature components in detail signal of decomposition results using ALS. In the present studies, the orthogonal Daubechies 4 (Db 4) wavelet is used as the initial wavelet. The proposed method is applied to both simulated signals and vibration signals acquired from a gearbox for periodic impulses detection. The two conventional methods (cepstrum analysis and Hilbert envelope analysis) and the orthogonal Db4 wavelet are also used to analyze the same signals for comparison. The results demonstrate that the proposed method is more effective in extracting transient components from noisy signals.

Adaptive and local analysis of climate data

This paper focuses on how to extract physically meaningful information from climate data,with emphases placed on adaptive and local analysis. It is argued that many traditional statistical analysis methods with rigorous mathematical footing may not be efficient in extracting essential physical information from climate data;rather,adaptive and local analysis methods that agree well with fundamental physical principles are more capable of capturing key information of climate data. To illustrate the improved power of adaptive and local analysis of climate data,we also introduce briefly the empirical mode decomposition and its later developments.

MESH FREE ADAPTIVE ALGORITHM FOR SOLVING EULER EQUATIONS ON STRUCTURED GRID POINTS

A complete mesh free adaptive algorithm （MFAA）, with solution adaptation and geometric adaptation, is developed to improve the resolution of flow features and to replace traditional global refinement techniques in structured grids. Unnecessary redundant points and elements are avoided by using the mesh free local clouds refinement technology in shock influencing regions and regions near large curvature places on the boundary. Inviscid compressible flows over NACA0012 and RAE2822 airfoils are computed. Finally numerical results validate the accuracy of the above method.

基于Adaptive Sigma-Point滤波的智能导弹对目标协同定位方法研究

在对智能导弹协同作战过程详细描述的基础上,提出了一种利用多枚智能导弹协同对目标定位的方法。考虑目标运动模型为静止模型和运动模型两种情况,将Sigma-Point滤波方法与过程噪声的自适应估计方法相结合,融合目标运动状态和目标到达角信息,克服了常规Sigma-Point滤波性能依赖于目标运动模型的先验统计信息的缺点。通过比较目标可能存在区域面积的大小,确定了参与协同定位的智能导弹数目和编队构型。仿真研究表明,多枚智能导弹协同对目标定位可以显著提高定位精度和速度。

Novel adaptive Hatch filter to mitigate the effects of ionosphere and multipath on LAAS

It has been proven that carrier smoothing and differential global positioning system （DGPS） are effective to improve the accuracy of pseudorange by reducing the noise in it and eliminating almost all the common mode errors between the ground station and user. However, another issue coming with local area augmentation system （LAAS） is how to find an adaptive smoothing window width to minimize the error on account of ionosphere delay and multipath. Based on the errors analysis in carrier smoothing process, a novel algorithm is formulated to design adaptive Hatch filter whose smoothing window width flexibly varies with the characteristic of ionosphere delay and multipath in the differential carrier smoothing process. By conducting the simulation in LAAS and after compared with traditional Hatch filers, it reveals that not only the accuracy of differential correction, but also the accuracy and the robustness of positioning results are significantly improved by using the designed adaptive Hatch filter.

Genome sequencing and population genomics modeling provide insights into the local adaptation of weeping forsythia

Understanding the genetic basis underlying the local adaptation of nonmodel species is a fundamental goal in evolutionary biology.In this study,we explored the genetic mechanisms of the local adaptation of Forsythia suspensa using genome sequence and population genomics data obtained from specific-locus amplified fragment sequencing.We assembled a high-quality reference genome of weeping forsythia(Scaffold N50=7.3 Mb)using ultralong Nanopore reads.Then,genome-wide comparative analysis was performed for 15 natural populations of weeping forsythia across its current distribution range.Our results revealed that candidate genes associated with local adaptation are functionally correlated with solar radiation,temperature and water variables across heterogeneous environmental scenarios.In particular,solar radiation during the period of fruit development and seed drying after ripening,cold,and drought significantly contributed to the adaptive differentiation of F.suspensa.Natural selection exerted by environmental factors contributed substantially to the population genetic structure of F.suspensa.Our results supported the hypothesis that adaptive differentiation should be highly pronounced in the genes involved in signal crosstalk between different environmental variables.Our population genomics study of F.suspensa provides insights into the fundamental genetic mechanisms of the local adaptation of plant species to climatic gradients.

Heterosis in locally adapted sorghum genotypes and potential of hybrids for increased productivity in contrasting environments in Ethiopia

Increased productivity in sorghum has been achieved in the developed world using hybrids.Despite their yield advantage,introduced hybrids have not been adopted in Ethiopia due to the lack of adaptive traits,their short plant stature and small grain size.This study was conducted to investigate hybrid performance and the magnitude of heterosis of locally adapted genotypes in addition to introduced hybrids in three contrasting environments in Ethiopia.In total,139 hybrids,derived from introduced seed parents crossed with locally adapted genotypes and introduced R lines,were evaluated.Overall,the hybrids matured earlier than the adapted parents,but had higher grain yield,plant height,grain number and grain weight in all environments.The lowland adapted hybrids displayed a mean better parent heterosis(BPH) of19%,equating to 1160 kg ha-1and a 29% mean increase in grain yield,in addition to increased plant height and grain weight,in comparison to the hybrids derived from the introduced R lines.The mean BPH for grain yield for the highland adapted hybrids was 16% in the highland and 52%in the intermediate environment equating to 698 kg ha-1and 2031 kg ha-1,respectively,in addition to increased grain weight.The magnitude of heterosis observed for each hybrid group was related to the genetic distance between the parental lines.The majority of hybrids also showed superiority over the standard check varieties.In general,hybrids from locally adapted genotypes were superior in grain yield,plant height and grain weight compared to the high parents and introduced hybrids indicating the potential for hybrids to increase productivity while addressing farmers' required traits.

An adaptive joint source and channel coding scheme for H.264 video multicasting over wireless LAN

This paper proposes an adaptive joint source and channel coding scheme for H.264 video multicast over wireless LAN which takes into account the user topology changes and varying channel conditions of multiple users, and dynamically allocates available bandwidth between source coding and channel coding, with the goal to optimize the overall system performance. In particular, source resilience and error correction are considered jointly in the scheme to achieve the optimal performance. And a channel estimation algorithm based on the average packet loss rate and the variance of packet loss rate is proposed also. Two overall performance criteria for video multicast are investigated and experimental results are presented to show the improvement obtained by the scheme.

Whole-genome resequencing of Japanese whiting(Sillago japonica) provide insights into local adaptations

The genetic adaptations of various organisms to heterogeneous environments in the northwestern Pacific remain poorly understood.Heterogeneous genomic divergence among populations may reflect environmentalselection.Advancingour understanding of the mechanisms by which organisms adapt to different temperatures in response to climate change and predicting the adaptive potential and ecological consequences of anthropogenic global warming are critical.We sequenced the whole genomes of Japanese whiting(Sillago japonica)specimens collected from different latitudinal locations along the coastal waters of China and Japan to detect possible thermal adaptations.Using population genomics,a total of 5.48 million single nucleotide polymorphisms(SNPs)from five populations revealed a complete genetic break between the Chinese and Japanese groups,which was attributed to both geographic distance and local adaptation.The shared natural selection genes between two isolated populations(i.e.,Zhoushan and Ise Bay/Tokyo Bay)indicated possible parallel evolution at the genetic level induced by temperature.These genes also indicated that the process of temperature selection on isolated populations is repeatable.Moreover,we observed natural candidate genes related to membrane fluidity,possibly underlying adaptation to cold environmental stress.These findings advance our understanding of the genetic mechanisms underlying the rapid adaptations of fish species.Species distribution projection models suggested that the Chinese and Japanese groups may have different responses to future climate change,with the former expanding and the latter contracting.The findings of this study enhance our understanding of genetic differentiation and adaptation to changing environments.

Novel Adaptive Binarization Method for Degraded Document Images

Achieving a good recognition rate for degraded document images is difficult as degraded document images suffer from low contrast,bleedthrough,and nonuniform illumination effects.Unlike the existing baseline thresholding techniques that use fixed thresholds and windows,the proposed method introduces a concept for obtaining dynamic windows according to the image content to achieve better binarization.To enhance a low-contrast image,we proposed a new mean histogram stretching method for suppressing noisy pixels in the background and,simultaneously,increasing pixel contrast at edges or near edges,which results in an enhanced image.For the enhanced image,we propose a new method for deriving adaptive local thresholds for dynamic windows.The dynamic window is derived by exploiting the advantage of Otsu thresholding.To assess the performance of the proposed method,we have used standard databases,namely,document image binarization contest(DIBCO),for experimentation.The comparative study on well-known existing methods indicates that the proposed method outperforms the existing methods in terms of quality and recognition rate.