The Study of Diversities of Marine Microbes in China

The oceans account for 71% of the Earth’s surface and are rich in the most advantageous and characteristic resources of marine microbes. The research on diversity is the key point for exploring and exploiting marine microbial resources. Giving attention to species diversity and genetic diversity of marine microbes, discovering novel metabolites with multiple functions, revealing key secondary metabolic process and the main regulation mechanisms in marine microbes, and developing a new technology of biosynthesis, are the important foundation for discovering innovative drugs and developing functional products with characteristics. The present paper has reviewed the recent advances in the four research areas of marine microbial species diversity, genetic diversity, chemical diversity and metabolic diversity in China.

Effects of n-3 Fatty Acids Supplementation on Performance, Relative Organ Weight and Fatty Acid Composition of Thigh Meat in Broiler Chickens

This study was conducted to evaluate the effects of dietary supplementation with marine microbe accumulating n-3 fatty acids on growth performance, relative organ weight and fatty acid composition of thigh meat in broilers. A total of 480 broilers were randomly allotted to three treat-ments with eight replications per treatment and 20 chicks per pen. A corn-soybean meal-based diet was formulated as a control diet and the broilers were then provided with one of the following dietary treatments:(1) CON(basal diet);(2) N0.1(basal diet+0.10% marine microbe accumulating n-3 fatty acids);(3) N0.2(basal diet+0.20% marine microbe accumulating n-3 fatty acids). No significant differences were observed in the growth performance or the relative organ weight among treatments. However, the levels of saturated fatty acids(SFA) and monounsaturated fatty acids(MUFA)were significantly lower(P<0.05) in groups that received the n-3 fatty acids treatments, whereas polyunsaturated fatty acids(PUFA) were increased(P<0.05) significantly in these groups. Overall, these results indicate that dietary supplementation with marine microbe accumulating n-3 fatty acids can increase PUFA and decrease SFA and MUFA in thigh meat.

Antimicrobial metabolites from marine microorganisms

Marine ecological niches have recently been described as "particularly promising" sources for search of new antimicrobials to combat antibiotic-resistant strains of pathogenic microorganisms. Marine organisms are excellent sources for many industrial products, but they are partly explored. Over 30 000 compounds have been isolated from marine sources. Bacteria, fungi, and cyanobacteria obtained from various marine sources secret several industrially useful bioactive compounds, possessing antibacterial, antifungal, and antimycobacterial activities. Sustainable cultivation methods for promising marine organisms and biotechnological processes for selected compounds can be developed, along with the establishment of biosensors for monitoring the target compounds. The semisynthetic modifications of marine-based bioactive compounds produce their new derivatives, structural analogs and mimetics that could serve as novel lead compounds against resistant pathogens. The present review focuses on promising antimicrobial compounds isolated from marine microbes from 1991-2013.

Exploring the interaction patterns among taxa and environments from marine metagenomic data

The sequencing revolution driven by high-throughput technologies has generated a huge amount of marine microbial sequences which hide the interaction patterns among microbial species and environment factors. Exploring these patterns is helpful for exploiting the marine resources. In this paper, we use the complex network approach to mine and analyze the interaction patterns of marine taxa and environments in spring, summer, fall and winter seasons. With the 16S rRNA pyrosequencing data of 76 time point taken monthly over 6 years, we first use our MtHc clustering algorithm to generate the operational taxonomic units （OTUs）. Then, employ the k-means method to divide 76 time point samples into four seasonal groups, and utilize mutual information （MI） to construct the four correlation networks among microbial species and environment factors. Finally, we adopt the symmetrical non-negative matrix factorization method to detect the interaction patterns, and analysis the relationship between marine species and environment factors. The results show that the four seasonal microbial interaction networks have the characters of complex networks, and interaction patterns are related with the seasonal variability; the same environmental factor influences different species in the four seasons; the four environmental factors of day length, photosynthetically active radiation, NO2＋ NO3 and silicate may have stronger influences on microbes than other environment factors.

The research of typical microbial functional group reveals a new oceanic carbon sequestration mechanism——A case of innovative method promoting scientific discovery

Marine microbes are major drivers of marine biogeochemical cycles and play critical roles in the ecosystems. Aerobic anoxygenic phototrophic bacteria(AAPB) are an important bacterial functional group with capability of harvesting light energy and wide distribution, and appear to have a particular role in the ocean's carbon cycling. Yet the global pattern of AAPB distribution was controversial at the beginning of the 21 st century due to the defects of the AAPB enumeration methods. An advanced time-series observation-based infrared epifluorescence microscopy(TIREM) approach was established to amend the existing AAPB quantitative deviation and led to the accurate enumeration of AAPB in marine environments. The abundance of AAPB and AAPB% were higher in coastal and continental shelf waters than in oceanic waters, which does not support the idea that AAPB are specifically adapted to oligotrophic conditions due to photosynthesis in AAPB acting a supplement to their organic carbon respiration. Further investigation revealed that dependence of AAPB on dissolved organic carbon produced by phytoplankton(PDOC) may limit their competition and control AAPB distribution. So, the selection of carbon sources by AAPB indicated that they can effectively fractionate the carbon flow in the sea. Enlightened by these findings, the following studies on the interactions between marine microbes and DOC led to the discovery of a new mechanism of marine carbon sequestration—the Microbial Carbon Pump(MCP). The conceptual framework of MCP addresses the sources and mechanism of the vast DOC reservoir in the ocean and represents a breakthrough in the theory of ocean carbon sequestration.