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DNA plasticity and damage in amyotrophic lateral sclerosis 被引量:1
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作者 Diane Penndorf Otto W.Witte Alexandra Kretz 《Neural Regeneration Research》 SCIE CAS CSCD 2018年第2期173-180,共8页
The pathophysiology of amyotrophic lateral sclerosis (ALS) is particularly challenging due to the heteroge- neity of its clinical presentation and the diversity of cellular, molecular and genetic peculiarities invol... The pathophysiology of amyotrophic lateral sclerosis (ALS) is particularly challenging due to the heteroge- neity of its clinical presentation and the diversity of cellular, molecular and genetic peculiarities involved. Molecular insights unveiled several novel genetic factors to be inherent in both familial and sporadic dis- ease entities, whose characterizations in terms of phenotype prediction, pathophysiological impact and putative prognostic value are a topic of current researches. However, apart from genetically well-defined high-confidence and other susceptibility loci, the role of DNA damage and repair strategies of the genome as a whole, either elicited as a direct consequence of the underlying genetic mutation or seen as an autono- mous parameter, in the initiation and progression of ALS, and the different cues involved in either process are still incompletely understood. This mini review summarizes current knowledge on DNA alterations and counteracting DNA repair strategies in ALS pathology and discusses the putative role of unconventional DNA entities including transposable elements and extrachromosomal circular DNA in the disease process. Focus is set on SODl-related pathophysiology, with extension to FUS, TDP-43 and C90RF72 mutations. Advancing our knowledge in the field will contribute to an improved understanding of this relentless dis- ease, for which therapeutic options others than symptomatic approaches are almost unavailable. 展开更多
关键词 amyotrophic lateral sclerosis DNA damage and repair extrachromosomal circular DNA microdna nuclear pore complex SOD1 mutations TDP-43 pathology transposable elements
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基于高通量测序技术对染色体外环状DNA研究的最新进展 被引量:1
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作者 郭志涛 武慧慧 +4 位作者 耿淑慧 陈晨 孟祥宁 孙文靖 朱静 《生命科学》 CSCD 北大核心 2023年第6期824-832,共9页
染色体外环状DNA (extrachromosomal circular DNA, eccDNA)是一种真核生物染色体外的闭合环状DNA结构,长度和染色体起源具有较高异质性。ecc DNA这一名称目前主要指大小在数百kb以内的小分子染色体外环状DNA,包括micro DNA、小多分散环... 染色体外环状DNA (extrachromosomal circular DNA, eccDNA)是一种真核生物染色体外的闭合环状DNA结构,长度和染色体起源具有较高异质性。ecc DNA这一名称目前主要指大小在数百kb以内的小分子染色体外环状DNA,包括micro DNA、小多分散环状DNA (small polydispersed circular DNA, spcDNA)以及其他未分类的小分子eccDNA等。高通量测序技术(high-throughput sequencing, HTS)是一种可以同时对百万条DNA分子进行序列测定的技术,又名新一代测序技术(next generation sequencing, NGS),具有高通量、高灵敏度、高准确度等优势。近年来高通量测序结合生物信息学分析技术不仅在揭示eccDNA染色体起源、分子结构、发生机制和潜在功能以及循环系统中的eccDNA分子特征研究等方面发挥了重要作用,而且推动了eccDNA在甲基化等表观遗传学方面的研究。生物信息学软件的发展和eccDNA分析算法的开发也对其研究提供了重要帮助。血浆以及尿液等液体活检常用体液样本中也鉴定出eccDNA的广泛存在,并且表现出与组织、生理状态以及疾病相关的生物学特征。eccDNA可能是重要的液体活检候选标志物。本综述旨在阐述利用高通量测序技术在研究eccDNA的结构、发生机制和功能上取得的最新成果,并讨论eccDNA在液体活检等方面的潜在应用。 展开更多
关键词 染色体外环状DNA microdna 高通量测序技术 液体活检
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