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Mitochondrial targeting sequence of magnetoreceptor MagR:More than just targeting 被引量:2
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作者 Yanqi Zhang Peng Zhang +10 位作者 Junjun Wang Jing Zhang Tianyang Tong Xiujuan Zhou Yajie Zhou Mengke Wei Chuanlin Feng Jinqian Li Xin Zhang Can Xie Tiantian Cai 《Zoological Research》 SCIE CSCD 2024年第3期468-477,共10页
Iron-sulfur clusters(ISC)are essential cofactors for proteins involved in various biological processes,such as electron transport,biosynthetic reactions,DNA repair,and gene expression regulation.ISC assembly protein I... Iron-sulfur clusters(ISC)are essential cofactors for proteins involved in various biological processes,such as electron transport,biosynthetic reactions,DNA repair,and gene expression regulation.ISC assembly protein IscA1(or MagR)is found within the mitochondria of most eukaryotes.Magnetoreceptor(MagR)is a highly conserved A-type iron and iron-sulfur cluster-binding protein,characterized by two distinct types of iron-sulfur clusters,[2Fe-2S]and[3Fe-4S],each conferring unique magnetic properties.MagR forms a rod-like polymer structure in complex with photoreceptive cryptochrome(Cry)and serves as a putative magnetoreceptor for retrieving geomagnetic information in animal navigation.Although the N-terminal sequences of MagR vary among species,their specific function remains unknown.In the present study,we found that the N-terminal sequences of pigeon MagR,previously thought to serve as a mitochondrial targeting signal(MTS),were not cleaved following mitochondrial entry but instead modulated the efficiency with which iron-sulfur clusters and irons are bound.Moreover,the N-terminal region of MagR was required for the formation of a stable MagR/Cry complex.Thus,the N-terminal sequences in pigeon MagR fulfil more important functional roles than just mitochondrial targeting.These results further extend our understanding of the function of MagR and provide new insights into the origin of magnetoreception from an evolutionary perspective. 展开更多
关键词 Magnetoreceptor(MagR) N-terminal sequence mitochondrial targeting signal Iron-sulfur cluster
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Sequence Analysis of Mitochondrial DNA D-loop Region in Xinjiang Goose 被引量:1
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作者 邵勇钢 岳涛 +1 位作者 李建华 刘银凤 《Agricultural Science & Technology》 CAS 2012年第11期2290-2292,2337,共4页
[Objective] The sequences of mitochondrial DNA D-loop region of Xinjiang Goose with three different colors of plumage were analyzed in order to study the genetic diversity of Xinjiang Goose, as well as the phylogeny a... [Objective] The sequences of mitochondrial DNA D-loop region of Xinjiang Goose with three different colors of plumage were analyzed in order to study the genetic diversity of Xinjiang Goose, as well as the phylogeny and evolution. [Method] Ten geese were selected randomly from the core populations of grey-, mosaic- and white-plumaged Xinjiang Goose respectively with a total number of thirty as experi- mental materials, of which the blood samples were collected from the largest vein under the wing (brachial vein) for DNA extraction. Sequences of mitochondrial DNA D-loop regions were determined using DNA sequencing technology to analyze the polymorphism. In addition, the genetic distances among different populations were estimated through the comparison with the reference sequences. [Resull] The con- tents of A, G, C and T nucleotides in the D-loop region of Xinjiang Goose were 28.85%, 17.05%, 25.38% and 28.72%, respectively. The average haplotype diversity and nucleotide diversity of Xinjiang Goose were 0.583 and 0.056. Xinjiang Goose and Greylag Goose were clustered into the same group. [Conclusion] The results showed that Xinjiang Geese with three different colors of plumage all descend from Greylag Goose (Anser anser). 展开更多
关键词 Xinjiang Goose mitochondrial DNA d-loop region sequence analysis
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Complete Sequence and Gene Organization of the Mitochondrial Genome of Tokay (Gekko gecko) 被引量:8
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作者 韩德民 周开亚 《Zoological Research》 CAS CSCD 北大核心 2005年第2期123-128,共6页
Long-PCR amplification, clone and primer-walking sequencing methods were employed in determine the complete sequence of mitochondrial genome of tokay (Gekko gecko). The genome is 16 435 bp in size, contains 13 protein... Long-PCR amplification, clone and primer-walking sequencing methods were employed in determine the complete sequence of mitochondrial genome of tokay (Gekko gecko). The genome is 16 435 bp in size, contains 13 protein-coding, 2 ribosomal and 22 transfer RNA genes. The mt genome of Gekko is similar to most of the vertebrates in gene components, order, orientation, tRNA structures, low percentage of guanine and high percentage of thymine, and skews of base GC and AT. Base A was preferred at third codon positions for protein genes is similar to amphibians and fishes rather than amnion vertebrates. The standard stop codes (TAA) present only in three protein genes, less than those of most vertebrates. Transfer RNA genes range in length from 63 to 76 nt, their planar structure present characteristic clover leaf, except for tRNA-Cys and tRNA-Ser (AGY) because of lacking the D arm. 展开更多
关键词 Gekko gecko SQUAMATE Complete sequence of mitochondrial genome Gene organization
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Molecular Taxonomy of Conogethes punctiferalis and Conogethes pinicolalis(Lepidoptera: Crambidae) Based on Mitochondrial DNA Sequences 被引量:6
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作者 WANG Jing ZHANG Tian-tao +3 位作者 WANG Zhen-ying HE Kang-lai LIU Yong LI Jing 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2014年第9期1982-1989,共8页
Conogethes punctiferalis(Guenée)(Lepidoptera: Crambidae) was originally considered as one species with fruit-feeding type(FFT) and pinaceae-feeding type(PFT), but it has subsequently been divided into tw... Conogethes punctiferalis(Guenée)(Lepidoptera: Crambidae) was originally considered as one species with fruit-feeding type(FFT) and pinaceae-feeding type(PFT), but it has subsequently been divided into two different species of Conogethes punctiferalis and Conogethes pinicolalis. The relationship between the two species was investigated by phylogenetic reconstruction using maximum-likelihood(ML) parameter estimations. The phylogenetic tree and network were constructed based upon sequence data from concatenation of three genes of mitochondrial cytochrome c oxidase subunits I, II and cytochrome b which were derived from 118 samples of C. punctiferalis and 24 samples of C. pinicolalis. The phylogenetic tree and network showed that conspecific sequences were clustering together despite intraspecific variability. Here we report the results of a combined analysis of mitochondrial DNA sequences from three genes and morphological data representing powerful evidence that C. pinicolalisand C. punctiferalis are significantly different. 展开更多
关键词 yellow peach moth Conogethes punctiferalis Conogethes pinicolalis mitochondrial DNA sequence
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Sequence Divergence of Mitochondrial 12S rRNA Gene and Phylogenetic Relationship Between Rattus rattus Sladeni and Rattus rattus Hainanicus
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作者 JIANGQing-lan HeMiao +2 位作者 XINJing-xi OOIE.C.Vincent KWANHoi-shan 《中山大学学报(自然科学版)》 CAS CSCD 北大核心 2005年第3期82-85,共4页
The appearance and hair color between these two subspecies Rattus rattus Sladeni and R.r. Hainanicus are similar to each other. Their most major distinctive characteristic is the length ratio of tail to body. However,... The appearance and hair color between these two subspecies Rattus rattus Sladeni and R.r. Hainanicus are similar to each other. Their most major distinctive characteristic is the length ratio of tail to body. However, this characteristic was unstable in some measuring records. In Guangdong, R.r. Hainanicus is restrictedly distributed in the west region, and R.r. Sladeni is widely distributed in the other regions of this province. In this study, we detected the sequences of mitochondrial 12S rRNA gene fragments of 9 samples from R.r. Hainanicus and R.r. Sladeni (Longmen and Hong Kong populations). These 385 nucleotide positions of 12S rRNA gene fragment include 26 variable sites and 14 parsimony-informative sites. 3 insertion/deletion sites are observed. The phylogenetic relationships among these samples were constructed by Neighbor-joining and Maximum parsimony methods. The analysis shows that R.r. Hainanicus is more closely relative to the Longmen population of R.r. Sladeni than to the Hong Kong population of R.r. Sladeni. The sequencing analysis of 12S rRNA gene fragments is not agreement on the classification of subspecies R. r. Hainanicus inferred from the morphology and geographical distribution. The morphological variation of R.r. Hainanicus should result from the natural selection, which causes local adaptation and geographic isolation. 展开更多
关键词 RATTUS RATTUS Sladeni R.r. Hainannicus mitochondrial DNA sequence DIVERGENCE PHYLOGENETIC RELATIONSHIPS
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Comparative Analysis of Mitochondrial Control Region Sequence from Three Flatfish Species(Pleuronectidae)
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作者 YUJianzhong KONGXiaoyu +1 位作者 YUZiniu ZHOULishi 《Journal of Ocean University of China》 SCIE CAS 2005年第1期80-84,共5页
The 5’-end of the mitochondrial control region sequences of three flatfishes (Pleuronectiformes: Pleuronectidae) were amplified and sequenced. These sequences were compared with those of other three Pleuronectids spe... The 5’-end of the mitochondrial control region sequences of three flatfishes (Pleuronectiformes: Pleuronectidae) were amplified and sequenced. These sequences were compared with those of other three Pleuronectids species retrieved from GenBank. A phylogenetic tree was constructed based on the partial control region sequences. The results of phyloge- netic analysis are consistent with those of conventional systematics. Compared to previous studies, the structure of the 5’-end of mitochondrial control region was analyzed. The terminal associated sequence motif and its complementary motif were i- dentified at the 5’-end of the sequences. A conserved sequence block, named as CM5’d, was identified in the 5’-end of con- trol region sequences in all Pleuronectids. Another central conserved sequence block, named as CSB-F, was detected in the central conserved blocks. 展开更多
关键词 PLEURONECTIDAE FLATFISH mitochondrial control region terminal associatedsequence conserved sequence block
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Complete Nucleotide Sequence of the Mitochondrial DNA of <i>Halyomorpha halys</i>(Stal) (Hemiptera: Pentatomidae) Specimens Collected Across Georgia
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作者 Mari Gogniashvili Nana Kunelauri +2 位作者 Tamar Shanava Natia Tephnadze Tengiz Beridze 《Advances in Entomology》 2021年第3期113-121,共9页
The brown marmorated stink bug, <i><span style="font-family:Verdana;">Halyomorpha halys</span></i><span style="font-family:Verdana;"> (Stal) (Hemiptera: Pentatomidae) ... The brown marmorated stink bug, <i><span style="font-family:Verdana;">Halyomorpha halys</span></i><span style="font-family:Verdana;"> (Stal) (Hemiptera: Pentatomidae) is an invasive species native to East Asia that has spread across Asia, Europe</span><span style="font-family:Verdana;">,</span><span style="font-family:;" "=""><span style="font-family:Verdana;"> and North America. </span><i><span style="font-family:Verdana;">H. halys </span></i><span style="font-family:Verdana;">causes damages to various grains, fruits, and vegetables, which is exemplified by the significant damage to the hazelnut harvest in Georgia (during 2016). This report describes the first attempted genetic study of the spread of </span><i><span style="font-family:Verdana;">H. halys</span></i><span style="font-family:Verdana;"> in Georgia. The first main goal of this research was to identify the haplotype of an invasive population in Georgia. For this purpose, the mitochondrial cytochrome c oxidase I subunit (</span><i><span style="font-family:Verdana;">COI</span></i><span style="font-family:Verdana;">) gene fragment from 65 samples</span><i><span style="font-family:Verdana;"> of H. halys</span></i><span style="font-family:Verdana;"> collected from different regions across Georgia was sequenced on an Applied Biosystems 3100 or 3700 genetic analyzer. In all cases, only the H1 haplotype, which is native to China, was identified. The second goal of this research was to determine the complete mitochondrial DNA sequence of </span><i><span style="font-family:Verdana;">H. halys</span></i><span style="font-family:Verdana;"> (Stal) specimens collected </span><span style="font-family:Verdana;">across Georgia. The complete mitochondrial DNA of H1 haplotype s</span><span style="font-family:Verdana;">equenced on an Illumina MiSeq platform. The mitochondrial DNA of the Georgian H1 haplotype has a length of 15</span></span><span style="font-family:Verdana;">,</span><span style="font-family:;" "=""><span style="font-family:Verdana;">478 base pairs. Using the sequence of the H22 haplotype of </span><i><span style="font-family:Verdana;">H. halys </span></i><span style="font-family:Verdana;">(native to Korea) as a reference, 62 single nucleotide polymorphisms (SNPs), three inversions</span></span><span style="font-family:Verdana;">,</span><span style="font-family:;" "=""><span style="font-family:Verdana;"> and four single T insertions were identified. Furthermore, 60 SNPs and four insertions in two tRNA and one rRNA genes were identified among 18 mitochondrial genes from the Georgian H1 haplotype. Nine of these SNPs resulted in amino acid substitutions. Furthermore, the detection of SNPs revealed many other polymorphic sites beyond the </span><i><span style="font-family:Verdana;">COI</span></i><span style="font-family:Verdana;"> gene, which can be used to detect new haplotypes.</span></span> 展开更多
关键词 Halyomorpha halys mitochondrial DNA ILLUMINA sequencing Single Nucleotide Polymorphism
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Genetic Variation of Mitochondrial D-loop Region and Evolution Analysis in Some Chinese Cattle Breeds 被引量:13
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作者 贾善刚 陈宏 +4 位作者 张桂香 王志刚 雷初朝 姚茹 韩旭 《Journal of Genetics and Genomics》 SCIE CAS CSCD 北大核心 2007年第6期510-518,共9页
The complete mitochondrial D-loop region from 123 individuals in 12 Chinese cattle breeds and two individuals in Germany Yellow cattle breed was sequenced and analyzed. The results were shown as follows: 93 variation... The complete mitochondrial D-loop region from 123 individuals in 12 Chinese cattle breeds and two individuals in Germany Yellow cattle breed was sequenced and analyzed. The results were shown as follows: 93 variations and 57 haplotypes were detected, and the average number of nucleotide difference was 22.708, nucleotide diversity (π) was 0.0251 ± 0.00479, and haplotype diversity (Hd) was 0.888 ± 0.026, indicating very high genetic diversity in Chinese cattle breeds. In the Neighbor-Joining tree, 13 cattle breeds were divided into two main clades, Bos taurus and Bos indicus; new Clade Ill had only one sequence from Apeijiaza cattle breed in Tibet, which was similar to that of yak at a higher level than other cattle breeds, proving the introgression of genes from the yak. The proportions of Bos taurus and Bos indicus were 64.3 % and 35.7 % respectively in Xigaze Humped cattle breed, and 50.0% and 50.0% respectively in Apeijiaza cattle breed, which revealed that Tibet cattle included Bos indicus haplotypes. The importance of Yunnan cattle in the origin of Chinese cattle was also confirmed based on their abundant haplotypes. Then, a very special haplotype il discovered in 27 Chinese cattle breeds, including 11 breeds in this study and 16 breeds in the GenBank, played the role of a nucleus in Chinese zebu and was further discussed. At the same time, the construction of Chinese zebu core group based on haplotype il validated the distinct origin of Bos indicus in Tibet, which was different from that of the other cattle breeds with zebu haplotypes in China. 展开更多
关键词 ORIGIN evolution CATTLE mitochondrial d-loop genetic diversity
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Mutations in the D-loop region of mitochondrial DNA in gastric cancer
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作者 YibingZhao HongyuYang GuoyuChen 《Journal of Nanjing Medical University》 2005年第2期95-98,共4页
Objective: To investigate the mutati ons in the D-loop region of mitochondrial DNA (mtDNA) in gastric cancer. Methods: The mtDNA of D-loop region was amplified by PCR and sequence d in 20 samples from gastric cancer ... Objective: To investigate the mutati ons in the D-loop region of mitochondrial DNA (mtDNA) in gastric cancer. Methods: The mtDNA of D-loop region was amplified by PCR and sequence d in 20 samples from gastric cancer tissue and adjacent normal membrane. Results: There were 7/20(35%) mutations in the mtDNA of D-loop regio n in gastric cancer patients. There were four microsatellite instabilities among the 18 mutations. Nine new polymorphisms were identified in 20 patients. Conclusion: The mtDNA of D-loop region might be highly polymorphoric and the mutation rate is high in patients with gastric cancer. 展开更多
关键词 mitochondrial DNA d-loop MUTATION
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基于线粒体DNAD-loop全序列的麒麟鸡遗传多样性研究 被引量:2
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作者 李威娜 郭美慧 +4 位作者 温锦添 翁茁先 陈洁波 杜炳旺 黄勋和 《广东农业科学》 CAS 2023年第4期100-107,共8页
【目的】从线粒体DNA(mtDNA)D-loop全序列角度评估麒麟鸡的遗传多样性水平,以期阐明麒麟鸡的品种形成。【方法】通过PCR产物直接测序法对麒麟鸡保种群的黄羽、白羽和黑羽3个资源群及8个地方鸡品种进行mtDNA D-loop全序列测定,分析遗传变... 【目的】从线粒体DNA(mtDNA)D-loop全序列角度评估麒麟鸡的遗传多样性水平,以期阐明麒麟鸡的品种形成。【方法】通过PCR产物直接测序法对麒麟鸡保种群的黄羽、白羽和黑羽3个资源群及8个地方鸡品种进行mtDNA D-loop全序列测定,分析遗传变异,并进行中性检测,构建单倍型中介网络图,探究麒麟鸡的群体历史。【结果】麒麟鸡mtDNAD-loop全序列为1231~1232bp,C+G含量(39.8%)低于T+A含量(60.2%),总体核苷酸多样性为0.00630±0.00054,明显高于其他8个地方鸡品种。3个资源群黄羽、白羽和黑羽麒麟鸡的单倍型多样性分别为0.777±0.076、0.816±0.060、0.710±0.057,核苷酸多样性分别为0.00699±0.00115、0.00662±0.00090、0.00546±0.00062,遗传多样性水平基本上与群体规模呈正相关。麒麟鸡与8个地方鸡的双参数遗传距离为0.008~0.009,净遗传距离为0.003~0.005,均大于其他地方鸡之间的遗传距离。90份麒麟鸡样本共检测到45个突变位点,定义了17个单倍型,其中独享型单倍型9个,单倍型多样性为0.773±0.039。黄羽、白羽和黑羽麒麟鸡的单倍型数量分别为12、7、5个。8个地方鸡品种定义了19个单倍型,其中河田鸡的单倍型数量最多(8个),宁都黄鸡的最少(3个),没有与麒麟鸡共享的单倍型。中性检测结果显示,除了黑羽麒麟鸡外,供试鸡种在品种水平上近期均未经历明显的种群扩张。麒麟鸡单倍型类群主要分布在进化枝A、B、C和E,优势单倍型类群是B(30.0%)和E(64.4%);8个地方鸡单倍型类群主要为A和B。【结论】独特的单倍型提示麒麟鸡具有独立的品种形成历史,相对较高的遗传多样性水平将有利于其保护和利用工作的开展。 展开更多
关键词 麒麟鸡 线粒体DNA(mtDNA) d-loop全序列 遗传多样性 系统进化
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基于线粒体D-loop区序列的4个黄尾鲴养殖群体遗传多样性分析
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作者 刘士力 陈大伟 +5 位作者 郑建波 程顺 蒋文枰 迟美丽 夏冯博 李飞 《广东农业科学》 CAS 2023年第11期139-145,共7页
【目的】黄尾鲴(Xenocypris davidi)是以腐殖质、有机碎屑为饵料,兼食浮游生物和底栖动物的的淡水经济鱼类,是浙江省自然水域鱼类增殖放流的主要品种之一。了解人工繁育对黄尾鲴遗传多样性的影响,可为自然水域黄尾鲴的增殖放流策略设计... 【目的】黄尾鲴(Xenocypris davidi)是以腐殖质、有机碎屑为饵料,兼食浮游生物和底栖动物的的淡水经济鱼类,是浙江省自然水域鱼类增殖放流的主要品种之一。了解人工繁育对黄尾鲴遗传多样性的影响,可为自然水域黄尾鲴的增殖放流策略设计和实施提供参考。【方法】对浙江长兴、八里店、双浦和湖南醴陵4个黄尾鲴养殖群体的线粒体DNA(mtDNA)D-loop序列进行PCR扩增和测序,通过序列分析研究4个群体的遗传多样性。【结果】黄尾鲴线粒体D-loop序列长度为1038~1093 bp,碱基A+T含量(65.3%)显著高于C+G含量(34.7%),平均转换/颠换比值(TS/TV)为4.6。在128条黄尾鲴的D-loop序列中共检测到101个变异位点,包括97个简约信息位点;界定了19种单倍型,其中长兴、双浦、八里店和醴陵群体的单倍型数目分别为5、12、4和2;单倍型多样性(h)介于0.226~0.915之间,核苷酸多样性(π)介于0.00640~0.01433之间。4个黄尾鲴养殖群体的遗传多样性具有一定差异,不同养殖群体间遗传距离为0.03782~0.88756,遗传分化系数为0.78903(P<0.01),群体内变异占整个遗传变异的21.10%,其中长兴群体和八里店群体的遗传分化系数最低,双浦和醴陵群体的遗传分化系数最高,遗传变异主要发生在群体间。【结论】4个黄尾鲴养殖群体的遗传多样性具有一定差异。黄尾鲴遗传变异和种群结构的信息可为其遗传多样性变化的研究提供参考,有助于黄尾鲴的资源保护。 展开更多
关键词 黄尾鲴 线粒体DNA(mtDNA) d-loop序列 遗传多样性 遗传结构
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Comparative analysis of mitochondrial fragments transferred to the nucleus in vertebrate
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作者 Hongying Qu Fei Ma Qingwei Li 《Journal of Genetics and Genomics》 SCIE CAS CSCD 北大核心 2008年第8期485-490,共6页
Mitochondrial DNA sequences transferred to the nucleus give rise to the so-called nuclear mitochondrial DNA (numt). In the GenBank database, 244 numts have been found in six orders of birds (Anseriformes, Columbifo... Mitochondrial DNA sequences transferred to the nucleus give rise to the so-called nuclear mitochondrial DNA (numt). In the GenBank database, 244 numts have been found in six orders of birds (Anseriformes, Columbiformes, Falconiformes, Charadriiformes, Galliformes and Passeriformes). Sequences alignment (NCBI-BLASTN) was carded out with mitochondrial and corresponding nuclear genome sequences in nine vertebrate species. The sequences with high homology were considered as numts. The number of numts ranged from 15 in chicken to 159 in chimpanzee. The sequences of numts in macaque, chimpanzee, and human spanned 100% of the entire mammalian mitochondrial genome. The reconstructed frequency of the mitochondrial gene transferred to the nucleus demonstrated that the rRNA genes had high frequencies than other mitochondrial genes. Using the RepeatMasker program, the transposable elements were detected in the flanking regions of each numt. The results showed that less than 5% of the flanking sequences were made up of repetitive elements in chicken. The GC content of 5'- and 3'-flanking regions of numts in nine species was less than 44%. The analysis of the flanking sequences provided a valuable understanding for future study on mechanism of mitochondrial gene transfer to the nucleus and the site of numt integration. 展开更多
关键词 mitochondrial DNA NUMTS nuclear insertion flanking sequence VERTEBRATE
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Differential RNA Editing of Mitochondrial Genes in WA-Cytoplasmic Based Male Sterile Line Pusa 6A, and Its Maintainer and Restorer Lines
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作者 Umakanta NGANGKHAM Swarup Kumar PARIDA +1 位作者 Ashok Kumar SINGH Trilochan MOHAPATRA 《Rice science》 SCIE CSCD 2019年第5期282-289,共8页
RNA editing changes the nucleotides at the transcript level of mitochondrial genes which results in synthesis of functional proteins.This study was designed to find the editing sites which could be implicated in male ... RNA editing changes the nucleotides at the transcript level of mitochondrial genes which results in synthesis of functional proteins.This study was designed to find the editing sites which could be implicated in male fertility restoration and to develop editing based markers for differentiation of cytoplasmic male sterility and maintainer lines from each other.DNA and RNA from young panicles were isolated from three-line system of hybrid rice PRH10,wild abortive(WA)cytoplasm based male sterile(A line Pusa 6A),maintainer(B line Pusa 6B)and restorer(R line PRR78)lines.Pusa 6A and PRR78 having the same WA cytoplasm are allo-nuclear and iso-cytpolasmic lines.The genomic and cDNA amplicons for eight mitochondrial genes(18SrRNA,atp6,atp9,cobII,coxI,coxIII,nadI and rps3)were sequenced and compared.Differences in genomic and cDNA sequences were considered as editing.Two hundred and thirty editing sites having base substitution or insertion/deletion were identified with the highest in 18SrRNA(5.74%)and the lowest in coxI(0.60%).The highest editing sites were observed in fertile maintainer Pusa 6B followed by PRR78 and Pusa 6A,of which random five editing sites in five different rice mitochondrial transcripts namely atp9,cobII,coxIII,rps3 and 18SrRNA were chosen and validated through cleaved amplified polymorphism sequence(CAPS)analysis and found to be partially edited in four genes.The identical editing sites of different mitochondrial genes from maintainer and restorer lines might reflect their possible contribution to fertility restoration of sterile WA cytoplasm. 展开更多
关键词 cleaved amplified polymorphism sequence CYTOPLASMIC male STERILITY hybrid rice RNAediting mitochondrial gene WILD abortive NUCLEOTIDE
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The Genetic Structure and Diversity of Repomucenus curvicornis Inhabiting Liaoning Coast Based on Mitochondrial COⅠ Gene and Control Region
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作者 Li Yulong Liu Xiuze +3 位作者 Yu Xuguang Li Yiping Fu Jie Dong Jing 《Animal Husbandry and Feed Science》 CAS 2018年第1期12-17,共6页
[Object] This study was conducted to explore the genetic diversity and structure of the wild Repomucenus curvicornis inhabiting Liaoning Coast, China. [Method] The mitochondrial COⅠ gene and control region(CR) were... [Object] This study was conducted to explore the genetic diversity and structure of the wild Repomucenus curvicornis inhabiting Liaoning Coast, China. [Method] The mitochondrial COⅠ gene and control region(CR) were PCR amplified from the wild R. curvicornis populations from the Liaodong Bay(n=22) and the northern Yellow Sea(n=18), sequenced and analyzed for genetic diversity. [Result] The contents of A, T, C and G of 624 bp COⅠ gene were 24.09%, 31.04%, 25.28%, and 19.59%, and those of 460 bp CR fragment were 32.96%, 32.80%, 14.86% and 19.38%, respectively. The total number of variable sites, average number of nucleotide differences( k), haplotype diversity(H) and nucleotide diversity(π) based on COⅠ gene were 38, 4.67,(0.96±0.02) and(0.007 5±0.004 2), and those based on CR fragment were 26, 3.35,(0.97 ±0.02) and(0.007 3±0.004 3), respectively. Based on mitochondrial COⅠ gene and CR, the genetic diversity of Liaodong Bay population was lower than that of the northern Yellow Sea population. The AMOVA analysis based on CR fragments revealed almost significant genetic divergence between the Liaodong Bay and the northern Yellow Sea populations, while there was no significant genetic divergence based on COⅠ gene. The results showed that CR and COⅠ gene are effective molecular markers for detecting the genetic diversity of R. curvicornis population, while CR is more reliable than COⅠ gene in detecting the genetic structure. [Conclusion] CR is an appropriate marker for genetic analysis of marine fish population. 展开更多
关键词 Repomucenus curvicornis mitochondrial DNA COⅠ gene Control region sequence Genetic diversity Genetic differentiation
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Isolation and Purification of Carp Mitochondrial DNA and Structural Analysis of Its tRNA^(Cys) Gene and the Light Strand Origin
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作者 吴乃虎 周立伟 +2 位作者 王钢峰 阎景智 冯羽 《Developmental and Reproductive Biology》 1993年第2期1-9,共9页
A new method is presented with which we isolated milochondrial DNA from fresh carp liver usingdifferential centrifugation and DNase treatment that gave high yield of purified product with an easyand economical procedu... A new method is presented with which we isolated milochondrial DNA from fresh carp liver usingdifferential centrifugation and DNase treatment that gave high yield of purified product with an easyand economical procedure. Highly distinct bands were displayed in agarose gel electrophoresls ofthe product digested with restrictlon enzymes, which were successfully used in constructingrestriction map and molecular clone of mitochondrial genes. With DNAs thus obtained, we havecloned cysteine tRNA gene (tRNA^(Cys) gene) of carp mitochondria, determined the nucleotide sequenceof it and the light strand origin, and depicted the cloverleaf secondary structure of tDNA^(Cya) and thelight strand origin. Analysis of nucleotide sequences of tRNA^(Cy) genes of 5 vertebrates has revealedunusual features of carp mitochondrial tRNA^(Cy) gene as compared with their cytoplasmic counter-parts, Altogether 36 bases were found in the light strand origin of carp mitochondriaf: 11 pairs in thestem; and 14 bases in the loop. As compared with those of other 11 vertebrate species, the sequenceof the stem is very conservative while both sequence and length of the loop are quite variable. Thestructure of the stem-loop may play an important role in light strand replication. 展开更多
关键词 mitochondrial DNA (mtDNA) tRNA^(Cys) Gene Light Strand Origin sequence Analysis
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三角鲤线粒体基因组全序列测定及分析
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作者 李强 李文俊 +3 位作者 韩崇 鲁同富 龚剑 桂林 《安徽农业科学》 CAS 2024年第5期108-111,120,共5页
[目的]三角鲤(Cyprinus multitaeniata)是我国具有重要经济价值的鱼类之一,了解三角鲤线粒体基因的结构和特点,为三角鲤的种群遗传多样性研究提供基础资料。[方法]采用26对引物扩增三角鲤的线粒体全基因,通过生物软件识别和分析各基因... [目的]三角鲤(Cyprinus multitaeniata)是我国具有重要经济价值的鱼类之一,了解三角鲤线粒体基因的结构和特点,为三角鲤的种群遗传多样性研究提供基础资料。[方法]采用26对引物扩增三角鲤的线粒体全基因,通过生物软件识别和分析各基因和非编码序列的位置和特点,并通过与GeneBank数据库已发表鲤科鱼类序列进行比较和构建系统发育树进行分析。[结果]三角鲤线粒体全基因总长度为16 573 bp,碱基含量A为32.2%、T为24.9%、C为27.3%、G为15.6%;包括37个编码基因(编码蛋白基因13个、tRNA基因22个和rRNA基因2个)和2个非编码序列区(OL区和控制区)。13个蛋白编码基因中,COX1的起始密码子为GTG,其他均为ATG;终止密码子包括TAG(ATP8)、TA(COX3、ATP6)、T(ND2、COX2、ND3、ND4、Cty b)和TAA(ND1、COX1、ND4L、ND5、ND6)3种。22个tRNA基因中,除了tRNASer(AGC)外其余都能折叠成典型的三叶草结构;三角鲤控制区序列可以识别出3个典型保守区域;系统发育分析表明,三角鲤与大眼鲤(C.megalophthalmus)亲缘关系较近。[结论]三角鲤线粒体基因组成、长度和排列顺序与典型的脊椎动物相同,在亲缘关系上与大眼鲤最近;线粒体基因组序列适用于三角鲤的系统发育分析。 展开更多
关键词 三角鲤 线粒体基因组 全序列分析 系统发育
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1例伴局灶节段性肾小球硬化的MELAS综合征家系的遗传学分析
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作者 李苏一 曹隽 +7 位作者 王清冰 焦智慧 任淑敏 高旭 权松霞 张基伟 刘静静 陈义兵 《河南医学研究》 CAS 2024年第20期3661-3667,共7页
目的 对1例伴局性节段性肾小球硬化(FSGS)的线粒体脑肌病、乳酸酸中毒和卒中样发作(MELAS)综合征家系进行遗传学病因分析。方法 先证者,女,36岁,表现为典型的MELAS综合征伴FSGS。先证者女儿表现为癫痫发作,经临床分析考虑线粒体病的可... 目的 对1例伴局性节段性肾小球硬化(FSGS)的线粒体脑肌病、乳酸酸中毒和卒中样发作(MELAS)综合征家系进行遗传学病因分析。方法 先证者,女,36岁,表现为典型的MELAS综合征伴FSGS。先证者女儿表现为癫痫发作,经临床分析考虑线粒体病的可能。应用高通量测序技术对先证者进行致病基因变异检测,利用Sanger测序对先证者及其家系成员进行验证。结果 先证者线粒体DNA检测到m.3243A>G突变,其女儿携带同样突变,但先证者母亲未检测到该突变。结论 本研究认为m.3243A>G突变是先证者MELAS表现及FSGS的分子病因,也是其女儿癫痫发作的病因。 展开更多
关键词 MELAS综合征 线粒体病 线粒体DNA 局灶节段性肾小球硬化 癫痫 高通量测序
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根据mtDNAD-loop序列分析东海银鲳群体遗传多样性 被引量:15
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作者 彭士明 施兆鸿 +1 位作者 陈超 侯俊利 《海洋科学》 CAS CSCD 北大核心 2010年第2期28-32,共5页
根据线粒体D-loop序列对舟山群岛附近海域的银鲳(Pampus argenteus)群体(n=24)的遗传多样性进行了研究。通过PCR技术对线粒体D-loop序列进行扩增,获得大小约为500bp的扩增产物。PCR产物经纯化并进行序列测定后,得到了357bp的核苷酸片段... 根据线粒体D-loop序列对舟山群岛附近海域的银鲳(Pampus argenteus)群体(n=24)的遗传多样性进行了研究。通过PCR技术对线粒体D-loop序列进行扩增,获得大小约为500bp的扩增产物。PCR产物经纯化并进行序列测定后,得到了357bp的核苷酸片段。在24个个体中,共检测到14个变异位点,其中8个转换位点,5个颠换位点,1个转换与颠换同时存在的位点。运用MEGA软件计算出不同个体间的遗传距离,并根据其遗传距离构建了UPGMA和NJ系统树。DNASP软件计算出的单倍型多样性(h)、核苷酸多样性(π)及平均核苷酸差异数(k)分别为0.89、0.007与2.57。此外,岐点分布及中性检验显示,东海银鲳群体在历史上可能经历过种群扩张。研究结果表明,线粒体D-loop基因可用于银鲳群体内及群体间遗传多样性的分析。 展开更多
关键词 银鲳(Pampus argenteus) 东海 线粒体DNA d-loop序列
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9个地方绵羊品种mtDNA D-loop高变区序列分析 被引量:6
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作者 牛华锋 陈玉林 +1 位作者 任战军 张富全 《西北农业学报》 CSCD 北大核心 2008年第4期5-9,共5页
对中国9个绵羊品种的103个个体mtDNA D-loop高变区(763 bp)进行了研究,结果表明:获得的序列长度范围为522-683 bp,可归为21种分子类型,各分子类型在绵羊品种间分布趋于一致,不存在特异性,而在品种内却存在异质性;绵羊mtDNA D-loop区... 对中国9个绵羊品种的103个个体mtDNA D-loop高变区(763 bp)进行了研究,结果表明:获得的序列长度范围为522-683 bp,可归为21种分子类型,各分子类型在绵羊品种间分布趋于一致,不存在特异性,而在品种内却存在异质性;绵羊mtDNA D-loop区序列长度变异主要是由于75 bp基元重复序列重复次数的不同(2、3或4个)和少数碱基的插入或缺失造成的;103个个体mtDNA D-loop区序列中A+T碱基组成比例(64.7%)明显高于G+C碱基组成比例(35.3%),说明了绵羊mtDNA D-loop区是A、T碱基富集区,且为高突变区,碱基突变类型包括转换、颠换、插入和缺失,且碱基转换频率远高于碱基颠换频率。 展开更多
关键词 绵羊 MTDNA 单倍型 基因序列
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白纹象沫蝉线粒体基因组及系统发育分析
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作者 林兴雨 宋凡 +2 位作者 赵特 李虎 宋南 《福建农林大学学报(自然科学版)》 CAS CSCD 北大核心 2024年第3期298-306,共9页
【目的】分析白纹象沫蝉(半翅目:尖胸沫蝉科)的线粒体基因组结构和沫蝉总科的系统发育关系,为更好地理解沫蝉总科的进化关系提供依据。【方法】利用高通量测序技术分析了白纹象沫蝉的线粒体基因组结构,并基于沫蝉总科已有的线粒体基因... 【目的】分析白纹象沫蝉(半翅目:尖胸沫蝉科)的线粒体基因组结构和沫蝉总科的系统发育关系,为更好地理解沫蝉总科的进化关系提供依据。【方法】利用高通量测序技术分析了白纹象沫蝉的线粒体基因组结构,并基于沫蝉总科已有的线粒体基因组数据采用最大似然法和贝叶斯法构建了系统发育关系。【结果】白纹象沫蝉线粒体基因组全长为15 091 bp(GenBank序列号:OQ682615),包含37个基因(13个蛋白质编码基因、2个核糖体RNA基因和22个转运RNA基因)和一段非编码控制区;13个蛋白质编码基因的起始密码子均为ATN;3个蛋白质编码基因cox2、cox3和nad4具有不完整的终止密码子T,其余10个蛋白质编码基因具有完整的终止密码子TAA或TAG;除trnS1因缺少DHU臂而无法构成稳定的三叶草结构外,其余tRNA基因均能形成典型的三叶草结构;rrnL基因的全长为1 217 bp,AT含量为80.7%;rrnS基因的全长为775 bp,AT含量为80.5%。最大似然法和贝叶斯法构建的系统发育树基本一致,均显示尖胸沫蝉科为非单系群。【结论】本研究获得了象沫蝉属昆虫第一条线粒体基因组全序列;尖胸沫蝉科为非单系群。 展开更多
关键词 半翅目 尖胸沫蝉科 沫蝉科 白纹象沫蝉 高通量测序 线粒体基因组 系统发育
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