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基于In Silicon模拟消化的北极虾DPP-Ⅳ抑制肽活性分析
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作者 刘浩思 徐春明 +3 位作者 田源 韩爱萍 刘孝飞 李振华 《中国食品添加剂》 CAS 2024年第1期127-135,共9页
北极虾具有很高的营养价值,在食品领域已引起越来越多的关注。对北极虾蛋白进行In Silicon模拟消化获得寡肽,通过PeptideRanker活性评分及理化性质分析,从中筛选出具有潜在生物活性的寡肽。使用ToxinPred分析和BIOPEP-UWM生物活性预测,... 北极虾具有很高的营养价值,在食品领域已引起越来越多的关注。对北极虾蛋白进行In Silicon模拟消化获得寡肽,通过PeptideRanker活性评分及理化性质分析,从中筛选出具有潜在生物活性的寡肽。使用ToxinPred分析和BIOPEP-UWM生物活性预测,发现部分寡肽具有二肽基肽酶-Ⅳ(dipeptidyl peptidase-Ⅳ,DPP-Ⅳ)抑制活性,最终确定WFP(一种三肽,Trp-Phe-Pro)具有最优的DPP-Ⅳ抑制活性肽。分子对接表明,WFP和DPP-Ⅳ能够形成稳定的复合物,其结合能为-6.93 kcal/mol,进一步研究表明,WFP通过与DPP-Ⅳ S1、S2、S3三个活性口袋中的9个氨基酸残基发生相互作用而抑制其活性。本研究为阐释北极虾营养价值及生物活性肽的开发提供了理论依据。 展开更多
关键词 in Silicon 分子对接 DPP-Ⅳ 细胞色素c氧化酶亚基Ⅰ 寡肽
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Epiphytic zooplankton community profiles in a typical urban wetland as revealed by DNA metabarcoding
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作者 Diwen LIANG Chunrong HUANG +3 位作者 Senjie LIN Jiahua DONG Mingyi LIANG Hailin LUO 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2024年第5期1571-1585,共15页
Zooplankton,a crucial component of urban wetland,are one of the effective bioindicators for monitoring the feeding stocks of organisms at higher trophic levels and assessing the ecological quality of ecosystems.Howeve... Zooplankton,a crucial component of urban wetland,are one of the effective bioindicators for monitoring the feeding stocks of organisms at higher trophic levels and assessing the ecological quality of ecosystems.However,information about the characteristics of epiphytic zooplankton community structure resulted from traditional methods is limited and hindered by the large amount of detritus and sludge attached to the macrophytes.We investigated the epiphytic zooplankton communities associated with macrophytes(Vallisneria,Nymphaea,and Thalia dealbata)in a subtropical wetland using as DNA markers of the 18 S rRNA gene and the mitochondrial cytochrome c oxidase subunit I(COI)gene.A total of 241 OTUs of zooplankton were obtained from COI amplicons,including 194 OTUs of Rotifera,22 of Cladocera,and 25 of Copepoda,while only 62 OTUs of zooplankton were obtained from 18 S rDNA amplicons including 34 OTUs of Rotifera and 28 of Copepoda.The zooplankton communities associated with the three macrophytes were similar,but they differed significantly from those in the open waters.However,there were no significant temporal differences among the zooplankton communities.Epiphytic zooplankton communities were dominated by littoral zooplankton such as Testudinella,Lecane,and Philodina.Microzooplankton,especially littoral species,utilize macrophytes as food sources and as refuges against predation.This further led to an increase inαandβdiversity of zooplankton communities in urban wetlands.Our result suggests that the joint use of multiple molecular markers could improve the taxonomic resolution and generate a comprehensive biodiversity profile of zooplankton. 展开更多
关键词 environmental DNA metabarcoding DiVERSiTY MAcROPHYTE cytochrome c oxidase subunit i(cOi) 18 S rRNA
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DNA barcoding of fishes from Zhoushan coastal waters using mitochondrial COI and 12S rRNA genes 被引量:1
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作者 Yehui WANG Na SONG +3 位作者 Shude LIU Zhi CHEN Anle XU Tianxiang GAO 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2023年第5期1997-2009,共13页
Accurate species identification is a key component of biodiversity research.DNA barcoding is an effective molecular method used for fish species identification.We aimed to study the DNA barcoding of fish in Zhoushan c... Accurate species identification is a key component of biodiversity research.DNA barcoding is an effective molecular method used for fish species identification.We aimed to study the DNA barcoding of fish in Zhoushan coastal waters,explore the differences and applicability of two gene fragments(12S rRNA and COI)of DNA barcoding in fish species identification,and established a comprehensive fish barcoding reference database.Two hundred and eighty-seven captured fish samples from Zhoushan coastal waters were identified using morphological characteristics and DNA barcoding.A total of 26412S rRNA sequences(belonging to eight orders,31 families,55 genera,and 66 species)and 188 COI sequences(belonging to seven orders,30 families,48 genera,and 58 species)were obtained.The lengths of the 12S rRNA sequences ranged from 165 to 178 bp,and the guanine-cytosine(GC)content was 45.37%.The average 12S rRNA interspecific and intraspecific genetic distances(K2P)were 0.10%and 26.66%,respectively.The length of the COI sequence ranged 574–655 bp,and the content of GC was 45.97%.The average 12S rRNA interspecific and intraspecific genetic distances(K2P)were 0.16%and 27.45%,respectively.The minimum interspecific genetic distances of 12S rRNA and COI(1.23%and 1.86%)were both greater than their maximum intraspecific genetic distances(2.42%and 8.66%).Three molecular analyses(NJ tree,ABGD,and GMYC)were performed to accurately identify and delineate species.Clustering errors occurred when the 12S rRNA sequences were delimited using the NJ tree method,and the delimitation results of ABGD and GMYC are consistent with the final species identification results.Our results demonstrate that DNA barcoding based on 12S rRNA and COI can be used as an effective tool for fish species identification,and 12S rRNA has good application prospects in the environmental DNA(eDNA)metabarcoding of marine fish. 展开更多
关键词 DNA barcoding cytochrome c oxidase subunit i(cOi) 12S rRNA fish identification species delimitation Zhoushan coastal waters
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MitochondrialtRNA^(leu(UUR)) Gene Mutation and the DecreasedActivity of Cytochrom e c Oxidase in Preeclam psia
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作者 WANG Zehua ZHANG Guanglan , LIN Meihua Department of Gynecology and Obstetrics, Xiehe Hospital, Tongji Medical University, Wuhan 430030 《Journal of Huazhong University of Science and Technology(Medical Sciences)》 SCIE CAS 1999年第3期209-211,共3页
To explore the roles of mitochondria tRNA leu(UUR) gene mutation at nucleotide 3243 and the activity of cytochrome c oxidase in pathogenesis of preeclampsia, 57 patients with preeclampsia and 60 normotension ... To explore the roles of mitochondria tRNA leu(UUR) gene mutation at nucleotide 3243 and the activity of cytochrome c oxidase in pathogenesis of preeclampsia, 57 patients with preeclampsia and 60 normotension pregnancy women were screened for tRNA leu(UUR) nt3243 A→G mutation with the method of polymers chain reaction (PCR) and restriction fragment length polymorphism. Cytochrome c oxidase activity was determined by measuring the rate of cyanide sensitive oxidation of reduced cytochrome c using luminosity photographer. The results showed that cytochrome c oxidase activity was significantly lower in the preeclampsia group (0.30±0.39/min, n = 32) than that in the controls (0.73±0.54/min, n = 26, P <0.01). The mitochondria DNA mutation at position 3243 was not found in our series. The results suggested that the decreased activity of cytochrome c oxidase might impair the energy production, leading to the mitochondria dysfunction and placenta dysfunction in preeclampsia patients. Mitochondria dysfunction may be involved in the pathogenesis of preeclampsia. The mutation of mitochondria DNA may not be the common contributor of preeclampsia in our series. 展开更多
关键词 pregnancy complications cardiovascular hypertension cytochrome c oxidase mitochondrial tRNA mutation PcR luminosity photographer
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基于线粒体COⅠ基因序列的梭鲈野生群体遗传结构
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作者 鲁翠云 孙志鹏 +4 位作者 曹顶臣 耿龙武 那荣滨 吴学工 郑先虎 《水产学报》 CSCD 北大核心 2024年第1期82-92,共11页
为了解梭鲈种群的遗传结构,实验利用线粒体细胞色素c氧化酶Ⅰ亚基(COⅠ)基因部分序列分析了中国6个和中亚2个群体的遗传差异,并与欧洲群体的单倍型序列进行了比较。结果在640 bp的COⅠ基因序列中检测到5个变异位点,定义了7种单倍型,发现... 为了解梭鲈种群的遗传结构,实验利用线粒体细胞色素c氧化酶Ⅰ亚基(COⅠ)基因部分序列分析了中国6个和中亚2个群体的遗传差异,并与欧洲群体的单倍型序列进行了比较。结果在640 bp的COⅠ基因序列中检测到5个变异位点,定义了7种单倍型,发现Hap1为8个梭鲈群体的共享单倍型,且与欧洲群体的HapA相同,在中国群体所占比例(93.36%)高于中亚群体(72.58%)和欧洲群体(53.85%);Hap2和Hap3是中国群体的特异单倍型,而Hap4~Hap7为中亚群体的特异单倍型。单倍型序列的聚类图和网络图均显示Hap1/A为梭鲈群体的原始单倍型,中国和中亚群体的特异单倍型相对于原始单倍型仅有1~2个位点的变异,属于Hap1/A的亚型,与欧洲群体的特异单倍型具有较大的差异。每个群体检测到1~4种单倍型,斋桑湖(ZS)群体单倍型最多,而中国的腾格里湖(NX)、兴凯湖(XK)和鸭绿江(YJ)群体仅有1个单倍型(Hap1);塔什干(TS)群体的单倍型多样性(Hd)和核苷酸多样性(π)最高(Hd=0.514±0.069;π=0.00079±0.00011),其次是ZS群体,而中国梭鲈群体的多样性参数较低。AMOVA分析结果显示,梭鲈群体间遗传变异占20.74%,群体间遗传分化程度较高(0.15≤F_(st)=0.20736<0.25),TS群体与ZS群体和中国群体间的遗传分化极大(F_(st)>0.25),中国群体中仅黑河(HH)群体与其他群体的遗传分化较大,而中国其他5个群体间无遗传分化。基于群体间遗传距离的系统进化树显示,来自中国的6个梭鲈群体与哈萨克斯坦的ZS群体聚为一支,而乌兹别克斯坦的TS群体独立为一支。研究结果为梭鲈群体的繁殖及放流管理提供了参考。 展开更多
关键词 梭鲈 线粒体cOⅠ基因 野生群体 遗传结构
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Genetic diversity and population structure of the sea star Asterias amurensis in the northern coast of China
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作者 Quanchao WANG Ying LIU +2 位作者 Zirui PENG Linlin CHEN Baoquan LI 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2023年第4期1593-1601,共9页
The sea star Asterias amurensis is widely viewed as a severe“marine pest”because of its broad feeding habits.Over the past few decades,A.amurensis undergoes massive and sporadic population outbreaks worldwide,causin... The sea star Asterias amurensis is widely viewed as a severe“marine pest”because of its broad feeding habits.Over the past few decades,A.amurensis undergoes massive and sporadic population outbreaks worldwide,causing extensive economic and ecological losses to the local aquaculture industry and marine ecosystem.Understanding the genetic diversity and population structure of A.amurensis can provide vital information for resource management.By analyzing the polymorphism of the mitochondrial cytochrome C oxidase subunit I(COI)gene and ten simple sequence repeat(SSR)microsatellites markers,the genetic diversity and population structure of A.amurensis of four populations along the northern coast of China was uncovered.A total of 36 haplotypes were identified,and a main haplotype was found in four populations.The Qingdao(QD)population displayed the highest genetic diversity among all the populations.The AMOVA and pairwise F_(st)showed that there was small but statistically significant population differentiation among the four populations,especially between QD and Weihai(WH).Moreover,the principal component analysis(PCA)and admixture analysis showed that several individuals in Yantai(YT)and Dalian(DL)had little genetic association with other individuals.Overall,this study provided useful information of the genetic diversity and population structure of A.amurensis and will contribute to the resource management of A.amurensis in China. 展开更多
关键词 Asterias amurensis cytochrome c oxidase subunit i(cOi) simple sequence repeat(SSR) population structure china seas
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基于COI基因的赣北地区小泡巨鼠的鉴定
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作者 陈飞 胡海军 +3 位作者 刘占斌 陶卉英 钱科 郑卫青 《中华卫生杀虫药械》 CAS 2023年第6期495-498,共4页
目的以线粒体细胞色素C氧化酶亚基(COI)基因为目的基因,利用DNA条形码技术对未知鼠样本进行鉴定.方法采用夹夜法对九江市武宁县宋溪镇某村的鼠密度进行调查,经形态学初步鉴定后,以捕获的1只无法明确鉴定的大型鼠样本为对象,提取基因组DN... 目的以线粒体细胞色素C氧化酶亚基(COI)基因为目的基因,利用DNA条形码技术对未知鼠样本进行鉴定.方法采用夹夜法对九江市武宁县宋溪镇某村的鼠密度进行调查,经形态学初步鉴定后,以捕获的1只无法明确鉴定的大型鼠样本为对象,提取基因组DNA并采用COI基因通用引物BatL5310和R6036R进行PCR扩增及测序,将测序结果在NCBI网站进行BLAST比对,采用MEGA7软件选择最大似然法构建系统发育树.结果共捕获小型兽类7只,密度为3.38%,经形态学鉴定有褐家鼠2只,黑线姬鼠2只,臭鼩鼱2只,形态学初步鉴定为青毛巨鼠或小泡巨鼠的未知鼠1只,提取的未知鼠样本DNA通过PCR成功扩增出COI基因目的条带,与NCBI基因库中小泡巨鼠(KP995219)序列同源性高达100%,系统发育树显示该鼠样本与小泡巨鼠(KP995219、KP995203)处于同一分支,遗传距离分别为0、0.0016,而青毛巨鼠(NC_036730)单独处于另一分支,遗传距离较远.结论赣北地区首次报道小泡巨鼠,采用COI基因的DNA条形码技术可快速、准确的进行鼠种鉴定,有助于弥补非常见鼠形态学鉴定困难的不足. 展开更多
关键词 小泡巨鼠 DNA条形码 细胞色素c氧化酶亚基Ⅰ基因 系统发育
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The complete mitochondrial genome of Triuncina daii(Lepidoptera:Bombycidae) and its phylogenetic implications 被引量:1
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作者 Yipei ZHAO Xingshi GU +1 位作者 Gefeng REN Xing WANG 《Entomotaxonomia》 CSCD 2017年第3期223-237,共15页
The bombycid moth, Triuncina daii Xing Wang & Zolotuhin, 2015, plays an important role for analyzing the phylogenetic relationships of the family Bombycidae (Lepidoptera: Bombycoidea). Here we first describe the c... The bombycid moth, Triuncina daii Xing Wang & Zolotuhin, 2015, plays an important role for analyzing the phylogenetic relationships of the family Bombycidae (Lepidoptera: Bombycoidea). Here we first describe the complete mitochondrial genome (mitogenome) of T. daii, which includes thirteen protein-coding genes (PCGs), twenty-two transfer RNA genes, two ribosomal RNA genes and an A+T-rich region, and we find the mitogenome is 15,482 bp in length (GenBank no. KY091643). The genes order and orientation in the T. daii mitogenome are similar to other sequenced lepidopteran species. Except for cox1, all of the PCGs started with ATN. Twelve PCGs stopped at TAA except for cox1 which stops at a single T. Thirteen PCGs of available species are used to demonstrate the inner phylogenetic relationships of Bombycoidea. The bombycid species form a monophyletic clade with a bootstrap value of 100% and a posterior probability of 1.00. 展开更多
关键词 MiTOGENOME Protein-coding genes cytochrome c oxidase subunit i coxl) Nucleotidecomposition
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Methylene blue protects mitochondrial respiration from ethanol withdrawal stress 被引量:1
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作者 Marianna Jung Daniel Metzger 《Advances in Bioscience and Biotechnology》 2013年第7期24-34,共11页
Methylene blue (MB), a tricyclic phenothiazine drug, has been reported to enhance mitochondrial functions including mitochondrial respiration. By comparison, stress associated with abrupt ethanol withdrawal (EW) imped... Methylene blue (MB), a tricyclic phenothiazine drug, has been reported to enhance mitochondrial functions including mitochondrial respiration. By comparison, stress associated with abrupt ethanol withdrawal (EW) impedes mitochondrial functions. We investigated whether MB protects mitochondrial respiration and cell survival from EW stress through a key mitochondrial enzyme, cytochrome c oxidase (COX). We also investigated whether the MB’s protection involves the inhibition of an excitatory neurotransmitter, glutamate. Male rats were exposed to and withdrawn from ethanol-diet (7.5%, 5 weeks). MB (0.5 mg/kg, intraperitoneal) was injected for the last 5 days of ethanol-diet and on the first day of EW. Cerebellum was then harvested to measure mitochondrial respiration and COX expression using real-time XF respirometer and immunohistochemistry, respectively. Separately, HT22 cells (a murine hippocampal cell line) were exposed to and abruptly withdrawn for 4 hours from chronic ethanol (100 mM, 3 days). MB was administered during EW with or without a COX inhibitor (NaN3) or glutamate. Mitochondrial respiration, COX content, and cell viability were then assessed using real-time XF respirometer, an immunoblot method, and Calcein assay, respectively. MB attenuated the suppressing effects of EW on mitochondrial respiration, COX content, and cell survival. This protection was reduced after NaN3 or glutamate cotreatment. These results suggest that MB treatment help maintain mitochondrial respiratory and cellular integrity through COX-upregulation and glutamateinhibition upon EW stress. MB treatment may help identify mitochondrial mechanisms underlying hyperexcitatory CNS disorders. 展开更多
关键词 cell ViABiLiTY Ethanol WiTHDRAWAL METHYLENE Blue mitochondrial RESPiRATiON cytochrome c oxidase
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Genetic difference of Chinese horseshoe crab(Tachypleus tridentatus) in southeast coast of China based on mitochondrial COI gene analysis
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作者 WENG Zhaohong XIAO Zhiqun +2 位作者 XIE Yangjie WANG Zhiyong GUI Jianfang 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2012年第3期132-137,共6页
Population genetic structure and historical demography of Chinese horseshoe crab (T.tridentatus)along southeast coast of China were inferred from the sequence data of mitochondrial cytochrome c oxidase subunit Ⅰ (COI... Population genetic structure and historical demography of Chinese horseshoe crab (T.tridentatus)along southeast coast of China were inferred from the sequence data of mitochondrial cytochrome c oxidase subunit Ⅰ (COI) fragment.The sequence analysis for 964 bp COI fragment was conducted in 28 individuals collected from five localities:Ninghai in Zhejiang Province,Meizhou and Zhangpu in Fujian Province,Beihai of Guangxi Zhuang Autonomous Region and Danzhou of Hainan Province.Sequence variation was relatively low with a total of seven transitions observed.In all localities,Haplotype H3 was the dominant type observed among eight haplotypes defined previously,and was at the center of radiation in Median-Joining network.The prolonged star-like network suggests a signature of population expansions.The level of diversity was low in total,with haplotype diversity ( Hd) being equal to 0.765 and nucleotide diversity (π) being equal to 0.00118,respectively.The genetic structure analysis revealed the significant genetic difference between Ninghai and Danzhou populations.Both mismatch distribution analysis and Fu's Fs test provided consistent inference of historic population expansion.The low genetic diversity of horseshoe crab observed along China coast indicated that urgent measures should be taken to protect this rare marine animal. 展开更多
关键词 Tachypleus tridentatus genetic difference cytochrome c oxidase subunit i gene MTDNA
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Genetic variation and phylogenetic relationship of Hypoderaeum conoideum(Bloch, 1782) Dietz, 1909(Trematoda: Echinostomatidae) inferred from nuclear and mitochondrial DNA sequences
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作者 Chairat Tantrawatpan Weerachai Saijuntha 《Asian Pacific Journal of Tropical Medicine》 SCIE CAS 2020年第11期515-520,共6页
Objective:To explore genetic variations of Hypoderaeum conoideum collected from domestic ducks from 12 different localities in Thailand and Lao PDR,as well as their phylogenetic relationship with American and European... Objective:To explore genetic variations of Hypoderaeum conoideum collected from domestic ducks from 12 different localities in Thailand and Lao PDR,as well as their phylogenetic relationship with American and European isolates.Methods:The nucleotide sequences of their nuclear ribosomal DNA(ITS),mitochondrial cytochrome c oxidase subunit 1(CO1),and NADH dehydrogenase subunit 1(ND1)were used to analyze genetic diversity indices.Results:We found relatively high levels of nucleotide polymorphism in ND1(4.02%),whereas moderate and low levels were observed in CO1(2.11%)and ITS(0.96%),respectively.Based on these polymorphisms,the 20 ND1,12 CO1,and 18 ITS haplotypes were classified,and several common haplotypes were observed in all samples.At least three major lineages,namely American,European and Asian lineages,have been classified by phylogenetic analyses based on ND1 sequences.Conclusions:Our report demonstrates that the ND1 gene is the most suitable genetic marker to explore genetic variation and phylogenetic relationship of Hypoderaeum conoideum.However,a combination of all loci for ND1,CO1 and ITS would be of great value toward further genetic investigation of this endemic worldwide parasite.Thus,comprehensive molecular genetic analyses of Hypoderaeum conoideum from its worldwide distribution is needed to further understanding of the evolutionary and systematic relationships of this parasite. 展开更多
关键词 Echinostomes Genetic diversity Genetic differentiation Nuclear ribosomal DNA cytochrome c oxidase subunit 1 NADH dehydrogenase subunit 1
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Genetic Variability of the Mitochondrial DNA in Honeybees (Apis mellifera L.) from Benin
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作者 Aude Kelomey Armand Paraiso +4 位作者 Haziz Sina Helene Legout Adolphe Adjanohoun Lionel Gamery Lamine Baba-Moussa 《Journal of Agricultural Science and Technology(A)》 2017年第8期557-566,共10页
The aim of this study was to evaluate the genetic variability in bees Apis mellifera from Benin by using mitochondrial DNA (mtDNA) as a molecular marker in their cytochrome c oxidase subunit I and II (COI-COI1) in... The aim of this study was to evaluate the genetic variability in bees Apis mellifera from Benin by using mitochondrial DNA (mtDNA) as a molecular marker in their cytochrome c oxidase subunit I and II (COI-COI1) intergenic region. A total of 304 bee colonies were sampled in 27 municipalities of the cashew growing area of Benin. These samples were analyzed by the cleaved amplified polymorphisms technique for determining the haplotypes of subspecies present in the sampled population. Eight PCR-RFLP profiles of African lineage A were then identified in the 304 samples of bees investigated. Forty-nine percent (49%) of the samples showed the profile of haplotype A1 (subspecies adansonii of Zambia), 40% of haplotype A4 (subspecies scutellata of South Africa) and 3% of haplotype A 19 (subspecies adansonii of Guinea). Five other haplotypes of the African branch (A) that had been described in a previous study were also identified: new 1 (2%), new 2 (2%), new 3 (1%), new 4 (2%) and new 5 (1%). This study showed that A. rnellifera from Benin belonged only to lineage A with the predominance of haplotypes AI and A4. This study will contribute to the development of coherent policies for conservation of local bees in Benin. 展开更多
关键词 Apis mellifera adansonii mitochondrial DNA cytochrome c oxidase subunit and African lineage Benin.
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6种帘蛤科贝类及4个地理种群文蛤线粒体COI基因片段序列分析 被引量:34
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作者 程汉良 夏德全 +4 位作者 吴婷婷 孟学平 吉红九 董志国 陈淑吟 《海洋学报》 CAS CSCD 北大核心 2007年第5期109-116,共8页
对文蛤(Meretrix meretrix L.,1758)、青蛤(Cyclina sinensis G.,1791)、硬壳蛤(Mercenaria mercenaria L.,1758)、江户布目蛤(Protothaca jedoensis L.,1874)、薄片镜蛤(Dosinia corrugata R.,1850)和菲律宾蛤仔(Ruditapes ... 对文蛤(Meretrix meretrix L.,1758)、青蛤(Cyclina sinensis G.,1791)、硬壳蛤(Mercenaria mercenaria L.,1758)、江户布目蛤(Protothaca jedoensis L.,1874)、薄片镜蛤(Dosinia corrugata R.,1850)和菲律宾蛤仔(Ruditapes philippinarum A.,1850)6种帘蛤科贝类和4个地理种群文蛤(大连、连云港、湛江、防城港)的细胞色素c氧化酶亚基Ⅰ(COⅠ)基因片段的核苷酸序列进行了分析,以探讨这一序列在种质鉴定、种群遗传结构和分子系统发生研究中的应用价值.测序结果表明,所有物种扩增片段长度均为709 bp,序列A+T含量(62.2%-67.6%)明显高于GC含量.物种间共有变异位点311个,其中简约信息位点202个;文蛤4个地理种群间共有变异位点46个,其中简约信息位点2个.此区段共编码235个氨基酸,种间共有氨基酸变异位点85个;文蛤种群间只有1个氨基酸变异位点.以COⅠ基因片段序列为标记,用大竹蛏(Solen grandis)作外群,构建了帘蛤科贝类的系统发生树,其拓扑结构显示4个地理种群文蛤首先聚为1个单元,然后与青蛤聚在一起,最后所有帘蛤科物种聚为一枝,与外群相区别,其结果与传统形态分类基本一致,说明COⅠ基因适合作为该科贝类种群遗传结构和系统发生研究的分子标记. 展开更多
关键词 帘蛤科 线粒体DNA 细胞色素c氧化酶亚基Ⅰ 系统发生学 系统发生生物地理学
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斑腿蝗科Catantopidae七种蝗虫线粒体COⅠ基因的DNA条形码研究 被引量:51
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作者 潘程莹 胡婧 +1 位作者 张霞 黄原 《Entomotaxonomia》 CSCD 北大核心 2006年第2期103-110,共8页
以我国常见的斑腿蝗科Catantopidae7种蝗虫为对象测定了COⅠ基因序列,探讨COⅠ基因作为DNA条形码在识别蝗虫物种方面的可行性。结果表明,斑腿蝗科3属7种的DNA分类和形态学分类基本一致,该基因可以探讨蝗虫属、种分类单元的系统发育问题... 以我国常见的斑腿蝗科Catantopidae7种蝗虫为对象测定了COⅠ基因序列,探讨COⅠ基因作为DNA条形码在识别蝗虫物种方面的可行性。结果表明,斑腿蝗科3属7种的DNA分类和形态学分类基本一致,该基因可以探讨蝗虫属、种分类单元的系统发育问题,为将线粒体基因组的COⅠ基因作为蝗虫DNA条形码进行分类鉴定手段的可行性提供一定的参考。 展开更多
关键词 直翅目 斑腿蝗科 cOⅠ基因 DNA条形码
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南海海区鲻鱼(Mugil cephalus)COⅠ基因序列的遗传多样性分析 被引量:15
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作者 孙鹏 彭士明 +1 位作者 尹飞 施兆鸿 《海洋与湖沼》 CAS CSCD 北大核心 2011年第1期131-136,共6页
利用线粒体细胞色素c氧化酶Ⅰ亚基(COⅠ)序列研究了南海海区鲻鱼群体的遗传多样性水平和遗传结构。通过PCR扩增与序列测定获得了长度为621bp的基因片段。在35个样品中共发现47处碱基变异,A、T、G、C碱基的平均含量分别为31.6%、24.1%、2... 利用线粒体细胞色素c氧化酶Ⅰ亚基(COⅠ)序列研究了南海海区鲻鱼群体的遗传多样性水平和遗传结构。通过PCR扩增与序列测定获得了长度为621bp的基因片段。在35个样品中共发现47处碱基变异,A、T、G、C碱基的平均含量分别为31.6%、24.1%、25.0%和19.2%。35条COⅠ序列共定义了25个单倍型,存在47个多态性位点,产生49个突变。其中,简约信息位点有36个,占总位点数的5.8%,同义替换位点7个,占总变异位点的14.9%,没有发现插入或缺失现象。单倍型多样性(Hd)为0.9563,核苷酸多样性(Pi)为0.02795,平均碱基差异(K)为17.36。Tajima’sD中性检验结果为1.29916,但差异不显著(P>0.10)。采用邻接法(NJ)和非加权配对算术平均法(UPGMA)构建分子系统树,所有的25个单倍型被分成两个分支。结果表明,南海海区鲻鱼种群具有较高的遗传多样性水平。其结果可以为合理开发和利用鲻鱼野生资源,以及建立和保护鲻鱼种质资源提供必要的参考。 展开更多
关键词 鲻鱼 线粒体DNA 细胞色素c氧化酶亚基i(cO i) 遗传多样性
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两种鲷属鱼类线粒体COI基因片段序列的比较 被引量:29
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作者 张凤英 马凌波 +2 位作者 施兆鸿 夏连军 马春艳 《上海水产大学学报》 CSCD 北大核心 2006年第4期403-408,共6页
利用通用引物成功扩增了黄鳍鲷和黑鲷的线粒体细胞色素氧化酶Ⅰ亚基(COI)基因序列。通过序列测定,得到581bp的基因片段,碱基A、T、G、C平均含量分别为25.8%、32.6%、18.0%和23.6%,序列中的A+T含量明显高于G+C含量,与其... 利用通用引物成功扩增了黄鳍鲷和黑鲷的线粒体细胞色素氧化酶Ⅰ亚基(COI)基因序列。通过序列测定,得到581bp的基因片段,碱基A、T、G、C平均含量分别为25.8%、32.6%、18.0%和23.6%,序列中的A+T含量明显高于G+C含量,与其他鱼类的C01基因片段研究结果相一致。通过序列分析发现黄鳍鲷和黑鲷两序列共存在14处碱基变异,其中在第19~139bp之间检测到13个变异位点,是变异频率较高的区段,可以考虑作为鲷属或者种群鉴别的分子标记。与黄鲷、真鲷、三长棘真鲷等鱼类比较,无插入和缺失位点,转换明显高于颠换。序列差异比较结果显示,真鲷与黄鳍鲷的序列差异在这5种鱼类中最大,达到了18.2%,黄鳍鲷和黑鲷的筹异最小(2.4%)。两个序列已提交到GenBank数据库中.序列臀录号为DQ185608和DQ185609. 展开更多
关键词 鲷属 线粒体DNA 细胞色素氧化酶Ⅰ亚基基因 序列分析
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嗜群血蜱和长角血蜱ITS-2、COⅠ和COⅡ基因序列变异与亲缘关系分析 被引量:15
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作者 古小彬 余增莹 +4 位作者 杨光友 孙家刚 魏洪 李开均 王淑贤 《畜牧兽医学报》 CAS CSCD 北大核心 2010年第6期746-754,共9页
本研究旨在阐明长角血蜱与嗜群血蜱间的亲缘关系。采用聚合酶链式反应(PCR)技术从长角血蜱和嗜群血蜱基因组DNA中扩增得到核糖体第二内部转录间隔区基因(ITS-2)片段、线粒体细胞色素氧化酶亚基Ⅰ基因(COⅠ)片段和线粒体细胞色素氧化酶亚... 本研究旨在阐明长角血蜱与嗜群血蜱间的亲缘关系。采用聚合酶链式反应(PCR)技术从长角血蜱和嗜群血蜱基因组DNA中扩增得到核糖体第二内部转录间隔区基因(ITS-2)片段、线粒体细胞色素氧化酶亚基Ⅰ基因(COⅠ)片段和线粒体细胞色素氧化酶亚基II基因(COⅡ)片段,并进行测序,进而分析其基因变异与系统发育。结果表明,长角血蜱和嗜群血蜱的ITS-2、COⅠ和COⅡ基因片段的大小存在差异,长角血蜱3种基因分别为361、479和647bp,嗜群血蜱基因分别为354、474和661bp。长角血蜱与嗜群血蜱间ITS-2、COⅠ和COⅡ基因的相似性分别为84.2%、89.0%和88.4%。以3种基因构建的NJ进化树中,长角血蜱和嗜群血蜱均聚类。因此,认为长角血蜱和嗜群血蜱间ITS-2、COI和COII基因间变异较小,它们是血蜱属中亲缘关系较近的2个有效种,支持传统形态学的分类地位。 展开更多
关键词 长角血蜱 嗜群血蜱 iTS-2 cOⅠ cOⅡ 序列变异 亲缘关系
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COI序列:影响动物分类学与生态学的DNA barcode 被引量:28
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作者 关申民 高邦权 《生态学杂志》 CAS CSCD 北大核心 2008年第8期1406-1412,共7页
DNA barcode是一段特殊的、可用于物种鉴定的DNA序列。目前在动物中最常用的DNA barcode是细胞色素C氧化酶1号基因(COI)的部分序列。随着标准数据库的建立,基于COI基因的DNA barcode在动物分类学和生态学中得到了广泛应用。但是,采用CO... DNA barcode是一段特殊的、可用于物种鉴定的DNA序列。目前在动物中最常用的DNA barcode是细胞色素C氧化酶1号基因(COI)的部分序列。随着标准数据库的建立,基于COI基因的DNA barcode在动物分类学和生态学中得到了广泛应用。但是,采用COI基因作为DNA barcode所隐含的涉及线粒体的进化历史、遗传特性和物种成种时间的默认前提,并非完全成立,由此引发了许多问题。本文阐述了基于COI基因的DNA barcode对分类学和生态学的影响,目前存在的问题,以及可能的研究方向。 展开更多
关键词 DNA BARcODE 细胞色素c氧化酶1号基因 应用
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基于COI部分序列探讨南海鲳属鱼类系统进化与种群遗传结构 被引量:3
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作者 孙鹏 尹飞 +1 位作者 施兆鸿 彭士明 《海洋科学》 CAS CSCD 北大核心 2012年第6期15-21,共7页
利用线粒体细胞色素c氧化酶Ⅰ亚基(COI)部分序列研究了南海区鲳属鱼类(Pampus)银鲳(P.ar-genteus)、珍鲳(P.minor)和中国鲳(P.chinensis)的系统进化与种群遗传结构。通过PCR扩增与序列测定获得了长度为643 bp的COI基因片段,其A、T、G、... 利用线粒体细胞色素c氧化酶Ⅰ亚基(COI)部分序列研究了南海区鲳属鱼类(Pampus)银鲳(P.ar-genteus)、珍鲳(P.minor)和中国鲳(P.chinensis)的系统进化与种群遗传结构。通过PCR扩增与序列测定获得了长度为643 bp的COI基因片段,其A、T、G、C碱基的平均含量分别为25.4%、33.6%、18.9%和22.1%,A+T含量高于G+C含量。64条序列共定义了20种单倍型,包含152个变异位点,简约信息位点148个,单变异位点4个,产生169个点突变。结果表明,银鲳与中国鲳的遗传差异最小,银鲳与珍鲳的其次,而珍鲳与中国鲳的遗传差异最大,3种鲳属鱼类的遗传多样性均呈现较低的水平,应采取有效的保护措施,以避免其遗传多样性水平的进一步丧失。本研究结果为鲳属鱼类资源保护和合理开发利用提供必要的参考。 展开更多
关键词 鲳属鱼类(Pampus) 细胞色素c氧化酶亚基Ⅰ(cOi) 序列变异 系统进化
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核桃举肢蛾线粒体CO I和Cytb基因片段序列分析 被引量:6
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作者 王琦琦 陈丹丹 唐光辉 《西北林学院学报》 CSCD 北大核心 2016年第1期145-152,共8页
核桃举肢蛾(Atrijuglans hetaohei)是危害核桃果实的主要害虫,严重影响核桃的产量和商品价值。在最新的形态学分类上,核桃举肢蛾属于鳞翅目、麦蛾总科、黑展足蛾属。通过同源序列比对探讨利用DNA条形码技术(DNA barcoding)对核桃举肢蛾... 核桃举肢蛾(Atrijuglans hetaohei)是危害核桃果实的主要害虫,严重影响核桃的产量和商品价值。在最新的形态学分类上,核桃举肢蛾属于鳞翅目、麦蛾总科、黑展足蛾属。通过同源序列比对探讨利用DNA条形码技术(DNA barcoding)对核桃举肢蛾进行分类鉴定的准确性。运用2对通用引物分别扩增核桃举肢蛾线粒体细胞色素C氧化酶亚基I(CO I)基因和细胞色素b(Cytb)基因片段,并与鳞翅目麦蛾总科、巢蛾总科、凤蝶总科、螟蛾总科等昆虫的同源片段进行碱基组成多样性和系统进化分析,扩增得到核桃举肢蛾CO I基因664bp片段和Cytb基因479bp片段。结果表明:核桃举肢蛾线粒体CO I基因片段中,A、T、G和C 4种核苷酸的含量分别为29.5%、39.4%、15.1%和16.1%,A+T的含量(68.9%)明显高于G+C含量(31.1%),存在显著的AT使用倾向性。在Cytb基因片段中,A、T、G和C 4种核苷酸的含量分别为33.4%、41.5%、10.2%和14.8%,A+T的含量为74.9%,也明显高于G+C含量(26%)。两段序列都以T-A间颠换和T-C间转换为主要替换方式,且密码子第2位点保守性最强,第3位点变异率最高。基于CO I和Cytb基因片段构建的NJ系统进化树均显示核桃举肢蛾与麦蛾总科昆虫处于同一个分支之下。利用DNA条形码技术得到的核桃举肢蛾分子生物学分类结果与传统的形态学分类结果一致。 展开更多
关键词 核桃举肢蛾 细胞色素c氧化酶亚基i 细胞色素B 遗传多样性 系统进化
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