Ray tracing is a computer graphics method that renders images realistically. As the name suggests, this technique primarily traces the path of light rays interacting with objects in a scene [1], permitting the calcula...Ray tracing is a computer graphics method that renders images realistically. As the name suggests, this technique primarily traces the path of light rays interacting with objects in a scene [1], permitting the calculation of lighting and reflecting impact [2]. As ray tracing is a time-consuming process, the need for parallelization to solve this problem arises. One downside of this solution is the existence of race conditions. In this work, we explore and experiment with a different, well-known solution for this race condition. Starting with the introduction and the background section, a brief overview of the topic is followed by a detailed part of how the race conditions may occur in the case of the ray tracing algorithm. Continuing with the methods and results section, we have used OpenMP to parallelize the Ray tracing algorithm with the different compiler directives critical, atomic, and first-private. Hence, it concluded that both critical and atomic are not efficient solutions to produce a good-quality picture, but first-private succeeded in producing a high-quality picture.展开更多
For the characteristics of intra prediction algorithms, the data dependence and parallelism between intra prediction models are first analyzed. This paper proposes a parallelization method based on dynamic reconfigura...For the characteristics of intra prediction algorithms, the data dependence and parallelism between intra prediction models are first analyzed. This paper proposes a parallelization method based on dynamic reconfigurable array processors provided by the project team, and uses data level parallel(DLP) algorithms in multi-core units. The experimental results show that Y-component of peak signal to noise ratio(Y-PSNR) is improved about 10 dB and the time is saved 63% compared with high-efficiency video coding(HEVC) test model HM10.0. This method can effectively reduce codec time of the video and reduce computational complexity.展开更多
An OpenMP approach was proposed to parallelize the sequential molecular dynamics(MD) code on shared memory machines. When a code is converted from the sequential form to the parallel form, data dependence is a main pr...An OpenMP approach was proposed to parallelize the sequential molecular dynamics(MD) code on shared memory machines. When a code is converted from the sequential form to the parallel form, data dependence is a main problem. A traditional sequential molecular dynamics code is anatomized to find the data dependence segments in it, and the two different methods, i.e., recover method and backward mapping method were used to eliminate those data dependencies in order to realize the parallelization of this sequential MD code. The performance of the parallelized MD code was analyzed by using some performance analysis tools. The results of the test show that the computing size of this code increases sharply form 1 million atoms before parallelization to 20 million atoms after parallelization, and the wall clock during computing is reduced largely. Some hot-spots in this code are found and optimized by improved algorithm. The efficiency of parallel computing is 30% higher than that of before, and the calculation time is saved and larger scale calculation problems are solved.展开更多
The combined finiteediscrete element method (FDEM) belongs to a family of methods of computationalmechanics of discontinua. The method is suitable for problems of discontinua, where particles aredeformable and can f...The combined finiteediscrete element method (FDEM) belongs to a family of methods of computationalmechanics of discontinua. The method is suitable for problems of discontinua, where particles aredeformable and can fracture or fragment. The applications of FDEM have spread over a number of disciplinesincluding rock mechanics, where problems like mining, mineral processing or rock blasting canbe solved by employing FDEM. In this work, a novel approach for the parallelization of two-dimensional(2D) FDEM aiming at clusters and desktop computers is developed. Dynamic domain decompositionbased parallelization solvers covering all aspects of FDEM have been developed. These have beenimplemented into the open source Y2D software package and have been tested on a PC cluster. Theoverall performance and scalability of the parallel code have been studied using numerical examples. Theresults obtained confirm the suitability of the parallel implementation for solving large scale problems. 2014 Institute of Rock and Soil Mechanics, Chinese Academy of Sciences. Production and hosting byElsevier B.V. All rights reserved.展开更多
Scale Invariant Feature Transform (SIFT) algorithm is a widely used computer vision algorithm that detects and extracts local feature descriptors from images. SIFT is computationally intensive, making it infeasible fo...Scale Invariant Feature Transform (SIFT) algorithm is a widely used computer vision algorithm that detects and extracts local feature descriptors from images. SIFT is computationally intensive, making it infeasible for single threaded im-plementation to extract local feature descriptors for high-resolution images in real time. In this paper, an approach to parallelization of the SIFT algorithm is demonstrated using NVIDIA’s Graphics Processing Unit (GPU). The parallel-ization design for SIFT on GPUs is divided into two stages, a) Algorithm de-sign-generic design strategies which focuses on data and b) Implementation de-sign-architecture specific design strategies which focuses on optimally using GPU resources for maximum occupancy. Increasing memory latency hiding, eliminating branches and data blocking achieve a significant decrease in aver-age computational time. Furthermore, it is observed via Paraver tools that our approach to parallelization while optimizing for maximum occupancy allows GPU to execute memory bound SIFT algorithm at optimal levels.展开更多
After the extension of depth modeling mode 4(DMM-4)in 3D high efficiency video coding(3D-HEVC),the computational complexity increases sharply,which causes the real-time performance of video coding to be impacted.To re...After the extension of depth modeling mode 4(DMM-4)in 3D high efficiency video coding(3D-HEVC),the computational complexity increases sharply,which causes the real-time performance of video coding to be impacted.To reduce the computational complexity of DMM-4,a simplified hardware-friendly contour prediction algorithm is proposed in this paper.Based on the similarity between texture and depth map,the proposed algorithm directly codes depth blocks to calculate edge regions to reduce the number of reference blocks.Through the verification of the test sequence on HTM16.1,the proposed algorithm coding time is reduced by 9.42%compared with the original algorithm.To avoid the time consuming of serial coding on HTM,a parallelization design of the proposed algorithm based on reconfigurable array processor(DPR-CODEC)is proposed.The parallelization design reduces the storage access time,configuration time and saves the storage cost.Verified with the Xilinx Virtex 6 FPGA,experimental results show that parallelization design is capable of processing HD 1080p at a speed above 30 frames per second.Compared with the related work,the scheme reduces the LUTs by 42.3%,the REG by 85.5%and the hardware resources by 66.7%.The data loading speedup ratio of parallel scheme can reach 3.4539.On average,the different sized templates serial/parallel speedup ratio of encoding time can reach 2.446.展开更多
The general m-machine permutation flowshop problem with the total flow-time objective is known to be NP-hard for m ≥ 2. The only practical method for finding optimal solutions has been branch-and-bound algorithms. In...The general m-machine permutation flowshop problem with the total flow-time objective is known to be NP-hard for m ≥ 2. The only practical method for finding optimal solutions has been branch-and-bound algorithms. In this paper, we present an improved sequential algorithm which is based on a strict alternation of Generation and Exploration execution modes as well as Depth-First/Best-First hybrid strategies. The experimental results show that the proposed scheme exhibits improved performance compared with the algorithm in [1]. More importantly, our method can be easily extended and implemented with lightweight threads to speed up the execution times. Good speedups can be obtained on shared-memory multicore systems.展开更多
This paper studies the;complexity of multighd mpllelization on message PaSsing computers. Parallelization is by domain decomposition. An optimal strip decomposition is proposed. With natural ordering of the grid point...This paper studies the;complexity of multighd mpllelization on message PaSsing computers. Parallelization is by domain decomposition. An optimal strip decomposition is proposed. With natural ordering of the grid points,the strip decomposition leads to good processor utilization. The efficiency could be significantly improved. Better performances could be achieved by making use of Van der Vorst ordering.展开更多
The Global-Regional Integrated forecast System(GRIST)is the next-generation weather and climate integrated model dynamic framework developed by Chinese Academy of Meteorological Sciences.In this paper,we present sever...The Global-Regional Integrated forecast System(GRIST)is the next-generation weather and climate integrated model dynamic framework developed by Chinese Academy of Meteorological Sciences.In this paper,we present several changes made to the global nonhydrostatic dynamical(GND)core,which is part of the ongoing prototype of GRIST.The changes leveraging MPI and PnetCDF techniques were targeted at the parallelization and performance optimization to the original serial GND core.Meanwhile,some sophisticated data structures and interfaces were designed to adjust flexibly the size of boundary and halo domains according to the variable accuracy in parallel context.In addition,the I/O performance of PnetCDF decreases as the number of MPI processes increases in our experimental environment.Especially when the number exceeds 6000,it caused system-wide outages(SWO).Thus,a grouping solution was proposed to overcome that issue.Several experiments were carried out on the supercomputing platform based on Intel x86 CPUs in the National Supercomputing Center in Wuxi.The results demonstrated that the parallel GND core based on grouping solution achieves good strong scalability and improves the performance significantly,as well as avoiding the SWOs.展开更多
A rate-dependent peridynamic ceramic model,considering the brittle tensile response,compressive plastic softening and strain-rate dependence,can accurately represent the dynamic response and crack propagation of ceram...A rate-dependent peridynamic ceramic model,considering the brittle tensile response,compressive plastic softening and strain-rate dependence,can accurately represent the dynamic response and crack propagation of ceramic materials.However,it also considers the strain-rate dependence and damage accumulation caused by compressive plastic softening during the compression stage,requiring more computational resources for the bond force evaluation and damage evolution.Herein,the OpenMP parallel optimization of the rate-dependent peridynamic ceramicmodel is investigated.Also,themodules that compute the interactions betweenmaterial points and update damage index are vectorized and parallelized.Moreover,the numerical examples are carried out to simulate the dynamic response and fracture of the ceramic plate under normal impact.Furthermore,the speed-up ratio and computational efficiency by multi-threads are evaluated and discussed to demonstrate the reliability of parallelized programs.The results reveal that the totalwall clock time has been significantly reduced after optimization,showing the promise of parallelization process in terms of accuracy and stability.展开更多
To reduce the computational complexity and storage cost caused by wedge segmentation algorithm,a scheme of simplifying wedge matching is proposed.It takes advantage of the correlation of the wedge separation line of d...To reduce the computational complexity and storage cost caused by wedge segmentation algorithm,a scheme of simplifying wedge matching is proposed.It takes advantage of the correlation of the wedge separation line of depth map and the direction of intra-prediction for 3D high-efficiency video coding(3D-HEVC).According to the difference of wedge segmentation between adjacent edge and opposite edge,a set only including 104×4 wedgelet templates is given.By expanding of the wedge wave of a certain minimum unit,a simple separation line acquisition method for different size of depth block is put forward.Furthermore,based on the array processor(DPR-CODEC)developed by project team,an efficient parallel scheme of the improved wedge segmentation mode prediction is introduced.By the scheme,prediction unit(PU)size can be changed randomly from 4×4 to 8×8,16×16,and 32×32,which is more in line with the needs of the HEVC standard.Veri-fied with test sequence in HTM16.1 and the Xilinx virtex-6 field programmable gate array(FPGA)respectively,the experiment results show that the proposed methods save 99.2%of the storage space and 63.94%of the encoding time,the serial/parallel acceleration ratio of each template reaches 1.84 in average.The coding performance,storage and resource consumption are considered for both.展开更多
In this paper, we present parallel programming approaches to calculate the values of the cells in matrix’s scoring used in the Smith-Waterman’s algorithm for sequence alignment. This algorithm, well known in bioinfo...In this paper, we present parallel programming approaches to calculate the values of the cells in matrix’s scoring used in the Smith-Waterman’s algorithm for sequence alignment. This algorithm, well known in bioinformatics for its applications, is unfortunately time-consuming on a serial computer. We use formulation based on anti-diagonals structure of data. This representation focuses on parallelizable parts of the algorithm without changing the initial formulation of the algorithm. Approaching data in that way give us a formulation more flexible. To examine this approach, we encode it in OpenMP and Cuda C. The performance obtained shows the interest of our paper.展开更多
With the development of satellite remote sensing technology, more and more requirements are put forward on the timeliness and stability of the satellite weather service system. The FY satellite rainfall estimate day k...With the development of satellite remote sensing technology, more and more requirements are put forward on the timeliness and stability of the satellite weather service system. The FY satellite rainfall estimate day knock off product algorithm runs longer, about 20 minutes, which affects the estimated rainfall product generated timeliness. Research and development of parallel optimization algorithms based on the needs of satellite meteorological services and their effectiveness in practical applications are necessary ways to enhance the high-performance and high-availability capabilities of satellite meteorological services. So aiming at this problem, we started the parallel algorithm research based on the analysis of precipitation estimation algorithm. Firstly, we explained the steps of precipitation estimated date knock off product algorithm;secondly, we analyzed the four main calculation module calculating the amount of algorithms;thirdly, multithreaded parallel algorithm and MPI parallelization was designed. Finally, the multithreaded parallel and MPI parallelization were realized. Experimental results show that the multithreaded parallel and MPI parallelization algorithm could greatly improve the overall degree of computational efficiency. And, MPI parallelization mode has a higher operating efficiency. The performance of parallel processing is closely related to the architecture of the computer. From the perspective of service scheduling and product algorithms, the MPI parallelization approach is adopted to achieve the purpose of improving service quality.展开更多
The parallelization of the diagnostics for climate research has been an important goal in the performance testing and improvement of the diagnostics for the Department of Energy’s (DOE’s) Accelerated Climate Modelin...The parallelization of the diagnostics for climate research has been an important goal in the performance testing and improvement of the diagnostics for the Department of Energy’s (DOE’s) Accelerated Climate Modeling for Energy (ACME) project [1]. The primary mission of the ACME project is to build and test the next-generation Earth system model for current and future generations of computing systems operated by the DOE office of science computing facilities, including the envisioned exascale systems foreseen in the early part of the next decade. As part of the underpinning workflow environment, a diagnostics, model metrics, and intercomparison Python framework, called UVC Metrics was created to aid in testing and production execution of the model. This framework builds on common methods and similar metrics to accommodate and diagnose individual component models, such as atmosphere, land, ocean, sea ice, and land ice. This paper reports on initial parallelization of UVC Metrics for the atmosphere model component using two popular frameworks: MPI and SPARK. A timing study is presented to assess the performance of each method in which significant improvement was achieved for both frameworks despite I/O contentions with NFS. The advantages and disadvantages of each framework are also presented.展开更多
针对油浸式变压器2维流-热耦合仿真计算效率低的问题,提出了基于混合有限元法的并行计算方法。首先,在Visual Studio 2019中采用C++语言实现无量纲最小二乘有限元法以及迎风有限元法的串行计算方法。然后,基于图形处理器(graphic proces...针对油浸式变压器2维流-热耦合仿真计算效率低的问题,提出了基于混合有限元法的并行计算方法。首先,在Visual Studio 2019中采用C++语言实现无量纲最小二乘有限元法以及迎风有限元法的串行计算方法。然后,基于图形处理器(graphic processing unit,GPU)实现流体场的并行计算,针对单分区分匝模型对比分析了不同GPU卡在不同网格条件下的并行计算效率,分析结果表明数据规模越大,GPU卡流处理器越多并行效果越好。其次,基于Intel MKL(Intel math kernel library)函数库结合共享存储并行编程(open multi-processing,OpenMP)实现了2维温度场的并行计算,并对比分析了不同网格数量对并行效率的影响。最后,在此基础上提出了根据不同仿真条件的混合并行计算方法,并应用到大型油浸式变压器绕组模型的2维温升热点分析中。结果表明,相较于串行程序,混合有限元并行计算方法的加速比达到了69.5,实验测试结果进一步验证了并行计算结果的准确性,研究成果为大型油浸式变压器流-热耦合问题的快速计算奠定了基础。展开更多
文摘Ray tracing is a computer graphics method that renders images realistically. As the name suggests, this technique primarily traces the path of light rays interacting with objects in a scene [1], permitting the calculation of lighting and reflecting impact [2]. As ray tracing is a time-consuming process, the need for parallelization to solve this problem arises. One downside of this solution is the existence of race conditions. In this work, we explore and experiment with a different, well-known solution for this race condition. Starting with the introduction and the background section, a brief overview of the topic is followed by a detailed part of how the race conditions may occur in the case of the ray tracing algorithm. Continuing with the methods and results section, we have used OpenMP to parallelize the Ray tracing algorithm with the different compiler directives critical, atomic, and first-private. Hence, it concluded that both critical and atomic are not efficient solutions to produce a good-quality picture, but first-private succeeded in producing a high-quality picture.
基金Supported by the National Natural Science Foundation of China(No.61772417,61634004,61602377,61272120)the Shaanxi Provincial Co-ordination Innovation Project of Science and Technology(No.2016KTZDGY02-04-02)the Shaanxi Provincial key R&D plan(No.2017GY-060)
文摘For the characteristics of intra prediction algorithms, the data dependence and parallelism between intra prediction models are first analyzed. This paper proposes a parallelization method based on dynamic reconfigurable array processors provided by the project team, and uses data level parallel(DLP) algorithms in multi-core units. The experimental results show that Y-component of peak signal to noise ratio(Y-PSNR) is improved about 10 dB and the time is saved 63% compared with high-efficiency video coding(HEVC) test model HM10.0. This method can effectively reduce codec time of the video and reduce computational complexity.
基金Project (50371026) supported by the National Natural Science Foundation of China
文摘An OpenMP approach was proposed to parallelize the sequential molecular dynamics(MD) code on shared memory machines. When a code is converted from the sequential form to the parallel form, data dependence is a main problem. A traditional sequential molecular dynamics code is anatomized to find the data dependence segments in it, and the two different methods, i.e., recover method and backward mapping method were used to eliminate those data dependencies in order to realize the parallelization of this sequential MD code. The performance of the parallelized MD code was analyzed by using some performance analysis tools. The results of the test show that the computing size of this code increases sharply form 1 million atoms before parallelization to 20 million atoms after parallelization, and the wall clock during computing is reduced largely. Some hot-spots in this code are found and optimized by improved algorithm. The efficiency of parallel computing is 30% higher than that of before, and the calculation time is saved and larger scale calculation problems are solved.
文摘The combined finiteediscrete element method (FDEM) belongs to a family of methods of computationalmechanics of discontinua. The method is suitable for problems of discontinua, where particles aredeformable and can fracture or fragment. The applications of FDEM have spread over a number of disciplinesincluding rock mechanics, where problems like mining, mineral processing or rock blasting canbe solved by employing FDEM. In this work, a novel approach for the parallelization of two-dimensional(2D) FDEM aiming at clusters and desktop computers is developed. Dynamic domain decompositionbased parallelization solvers covering all aspects of FDEM have been developed. These have beenimplemented into the open source Y2D software package and have been tested on a PC cluster. Theoverall performance and scalability of the parallel code have been studied using numerical examples. Theresults obtained confirm the suitability of the parallel implementation for solving large scale problems. 2014 Institute of Rock and Soil Mechanics, Chinese Academy of Sciences. Production and hosting byElsevier B.V. All rights reserved.
文摘Scale Invariant Feature Transform (SIFT) algorithm is a widely used computer vision algorithm that detects and extracts local feature descriptors from images. SIFT is computationally intensive, making it infeasible for single threaded im-plementation to extract local feature descriptors for high-resolution images in real time. In this paper, an approach to parallelization of the SIFT algorithm is demonstrated using NVIDIA’s Graphics Processing Unit (GPU). The parallel-ization design for SIFT on GPUs is divided into two stages, a) Algorithm de-sign-generic design strategies which focuses on data and b) Implementation de-sign-architecture specific design strategies which focuses on optimally using GPU resources for maximum occupancy. Increasing memory latency hiding, eliminating branches and data blocking achieve a significant decrease in aver-age computational time. Furthermore, it is observed via Paraver tools that our approach to parallelization while optimizing for maximum occupancy allows GPU to execute memory bound SIFT algorithm at optimal levels.
基金Supported by the National Natural Science Foundation of China(No.61834005,61772417,61802304,61602377,61874087,61634004)the Shaanxi Province Key R&D Plan(No.2020JM-525,2021GY-029,2021KW-16)。
文摘After the extension of depth modeling mode 4(DMM-4)in 3D high efficiency video coding(3D-HEVC),the computational complexity increases sharply,which causes the real-time performance of video coding to be impacted.To reduce the computational complexity of DMM-4,a simplified hardware-friendly contour prediction algorithm is proposed in this paper.Based on the similarity between texture and depth map,the proposed algorithm directly codes depth blocks to calculate edge regions to reduce the number of reference blocks.Through the verification of the test sequence on HTM16.1,the proposed algorithm coding time is reduced by 9.42%compared with the original algorithm.To avoid the time consuming of serial coding on HTM,a parallelization design of the proposed algorithm based on reconfigurable array processor(DPR-CODEC)is proposed.The parallelization design reduces the storage access time,configuration time and saves the storage cost.Verified with the Xilinx Virtex 6 FPGA,experimental results show that parallelization design is capable of processing HD 1080p at a speed above 30 frames per second.Compared with the related work,the scheme reduces the LUTs by 42.3%,the REG by 85.5%and the hardware resources by 66.7%.The data loading speedup ratio of parallel scheme can reach 3.4539.On average,the different sized templates serial/parallel speedup ratio of encoding time can reach 2.446.
文摘The general m-machine permutation flowshop problem with the total flow-time objective is known to be NP-hard for m ≥ 2. The only practical method for finding optimal solutions has been branch-and-bound algorithms. In this paper, we present an improved sequential algorithm which is based on a strict alternation of Generation and Exploration execution modes as well as Depth-First/Best-First hybrid strategies. The experimental results show that the proposed scheme exhibits improved performance compared with the algorithm in [1]. More importantly, our method can be easily extended and implemented with lightweight threads to speed up the execution times. Good speedups can be obtained on shared-memory multicore systems.
文摘This paper studies the;complexity of multighd mpllelization on message PaSsing computers. Parallelization is by domain decomposition. An optimal strip decomposition is proposed. With natural ordering of the grid points,the strip decomposition leads to good processor utilization. The efficiency could be significantly improved. Better performances could be achieved by making use of Van der Vorst ordering.
基金This work was supported by the National Key Research and Development Program of China under Grant No.2017YFC1502203.
文摘The Global-Regional Integrated forecast System(GRIST)is the next-generation weather and climate integrated model dynamic framework developed by Chinese Academy of Meteorological Sciences.In this paper,we present several changes made to the global nonhydrostatic dynamical(GND)core,which is part of the ongoing prototype of GRIST.The changes leveraging MPI and PnetCDF techniques were targeted at the parallelization and performance optimization to the original serial GND core.Meanwhile,some sophisticated data structures and interfaces were designed to adjust flexibly the size of boundary and halo domains according to the variable accuracy in parallel context.In addition,the I/O performance of PnetCDF decreases as the number of MPI processes increases in our experimental environment.Especially when the number exceeds 6000,it caused system-wide outages(SWO).Thus,a grouping solution was proposed to overcome that issue.Several experiments were carried out on the supercomputing platform based on Intel x86 CPUs in the National Supercomputing Center in Wuxi.The results demonstrated that the parallel GND core based on grouping solution achieves good strong scalability and improves the performance significantly,as well as avoiding the SWOs.
基金supported by the National Natural Science Foundation of China(Nos.11972267,11802214 and 51932006)the Fundamental Research Funds for the Central Universities(WUT:2020lll031GX).
文摘A rate-dependent peridynamic ceramic model,considering the brittle tensile response,compressive plastic softening and strain-rate dependence,can accurately represent the dynamic response and crack propagation of ceramic materials.However,it also considers the strain-rate dependence and damage accumulation caused by compressive plastic softening during the compression stage,requiring more computational resources for the bond force evaluation and damage evolution.Herein,the OpenMP parallel optimization of the rate-dependent peridynamic ceramicmodel is investigated.Also,themodules that compute the interactions betweenmaterial points and update damage index are vectorized and parallelized.Moreover,the numerical examples are carried out to simulate the dynamic response and fracture of the ceramic plate under normal impact.Furthermore,the speed-up ratio and computational efficiency by multi-threads are evaluated and discussed to demonstrate the reliability of parallelized programs.The results reveal that the totalwall clock time has been significantly reduced after optimization,showing the promise of parallelization process in terms of accuracy and stability.
基金the National Natural Science Foundation of China(No.61834005,61772417,61802304,61602377,61874087,61634004)Shaanxi International Science and Technology Cooperation Program(No.2018KW-006).
文摘To reduce the computational complexity and storage cost caused by wedge segmentation algorithm,a scheme of simplifying wedge matching is proposed.It takes advantage of the correlation of the wedge separation line of depth map and the direction of intra-prediction for 3D high-efficiency video coding(3D-HEVC).According to the difference of wedge segmentation between adjacent edge and opposite edge,a set only including 104×4 wedgelet templates is given.By expanding of the wedge wave of a certain minimum unit,a simple separation line acquisition method for different size of depth block is put forward.Furthermore,based on the array processor(DPR-CODEC)developed by project team,an efficient parallel scheme of the improved wedge segmentation mode prediction is introduced.By the scheme,prediction unit(PU)size can be changed randomly from 4×4 to 8×8,16×16,and 32×32,which is more in line with the needs of the HEVC standard.Veri-fied with test sequence in HTM16.1 and the Xilinx virtex-6 field programmable gate array(FPGA)respectively,the experiment results show that the proposed methods save 99.2%of the storage space and 63.94%of the encoding time,the serial/parallel acceleration ratio of each template reaches 1.84 in average.The coding performance,storage and resource consumption are considered for both.
文摘In this paper, we present parallel programming approaches to calculate the values of the cells in matrix’s scoring used in the Smith-Waterman’s algorithm for sequence alignment. This algorithm, well known in bioinformatics for its applications, is unfortunately time-consuming on a serial computer. We use formulation based on anti-diagonals structure of data. This representation focuses on parallelizable parts of the algorithm without changing the initial formulation of the algorithm. Approaching data in that way give us a formulation more flexible. To examine this approach, we encode it in OpenMP and Cuda C. The performance obtained shows the interest of our paper.
文摘With the development of satellite remote sensing technology, more and more requirements are put forward on the timeliness and stability of the satellite weather service system. The FY satellite rainfall estimate day knock off product algorithm runs longer, about 20 minutes, which affects the estimated rainfall product generated timeliness. Research and development of parallel optimization algorithms based on the needs of satellite meteorological services and their effectiveness in practical applications are necessary ways to enhance the high-performance and high-availability capabilities of satellite meteorological services. So aiming at this problem, we started the parallel algorithm research based on the analysis of precipitation estimation algorithm. Firstly, we explained the steps of precipitation estimated date knock off product algorithm;secondly, we analyzed the four main calculation module calculating the amount of algorithms;thirdly, multithreaded parallel algorithm and MPI parallelization was designed. Finally, the multithreaded parallel and MPI parallelization were realized. Experimental results show that the multithreaded parallel and MPI parallelization algorithm could greatly improve the overall degree of computational efficiency. And, MPI parallelization mode has a higher operating efficiency. The performance of parallel processing is closely related to the architecture of the computer. From the perspective of service scheduling and product algorithms, the MPI parallelization approach is adopted to achieve the purpose of improving service quality.
文摘The parallelization of the diagnostics for climate research has been an important goal in the performance testing and improvement of the diagnostics for the Department of Energy’s (DOE’s) Accelerated Climate Modeling for Energy (ACME) project [1]. The primary mission of the ACME project is to build and test the next-generation Earth system model for current and future generations of computing systems operated by the DOE office of science computing facilities, including the envisioned exascale systems foreseen in the early part of the next decade. As part of the underpinning workflow environment, a diagnostics, model metrics, and intercomparison Python framework, called UVC Metrics was created to aid in testing and production execution of the model. This framework builds on common methods and similar metrics to accommodate and diagnose individual component models, such as atmosphere, land, ocean, sea ice, and land ice. This paper reports on initial parallelization of UVC Metrics for the atmosphere model component using two popular frameworks: MPI and SPARK. A timing study is presented to assess the performance of each method in which significant improvement was achieved for both frameworks despite I/O contentions with NFS. The advantages and disadvantages of each framework are also presented.
文摘针对油浸式变压器2维流-热耦合仿真计算效率低的问题,提出了基于混合有限元法的并行计算方法。首先,在Visual Studio 2019中采用C++语言实现无量纲最小二乘有限元法以及迎风有限元法的串行计算方法。然后,基于图形处理器(graphic processing unit,GPU)实现流体场的并行计算,针对单分区分匝模型对比分析了不同GPU卡在不同网格条件下的并行计算效率,分析结果表明数据规模越大,GPU卡流处理器越多并行效果越好。其次,基于Intel MKL(Intel math kernel library)函数库结合共享存储并行编程(open multi-processing,OpenMP)实现了2维温度场的并行计算,并对比分析了不同网格数量对并行效率的影响。最后,在此基础上提出了根据不同仿真条件的混合并行计算方法,并应用到大型油浸式变压器绕组模型的2维温升热点分析中。结果表明,相较于串行程序,混合有限元并行计算方法的加速比达到了69.5,实验测试结果进一步验证了并行计算结果的准确性,研究成果为大型油浸式变压器流-热耦合问题的快速计算奠定了基础。