Plankton community composition in the Three Gorges Reservoir Region revealed by PCR-DGGE and its relationships with environmental factors

To explore the relationships between community composition and the environment in a reservoir ecosystem, plankton communities from the Three Gorges Reservoir Region were studied by PCR-denaturing gradient gel electrophoresis fingerprinting. Bacterial and eukaryotic operational taxonomic units （OTUs）, generated by DGGE analysis of the PCR-amplified 16S and 18S rRNA genes, were used as surrogates for the dominant ＂biodiversity units＂. OTU composition among the sites was heterogeneous; 46.7% of the total bacterial OTUs （45） and 64.1% of the eukaryotic OTUs （39） were identified in less than half of the sampling sites. Unweighted pair group method with arithmetic averages （UPGMA） clustering of the OTUs suggested that the plankton communities in the Xiangxi Rive sites were not always significantly different from those from the Yangtze River sites, despite clear differences in their environmental characterizations. Canonical correspondence analysis （CCA） was applied to further investigate the relationships between OTU composition and the environmental factors. The first two CCA ordination axes suggested that the bacterial community composition was primarily correlated with the variables of NO3^--N, dissolved oxygen （DO）, and SiO3^2--Si, whereas, the eukaryotic community was mainly correlated with the concentrations of DO, PO4^3--P, and SiO3^2--Si.

Spatial heterogeneity in a deep artificial lake plankton community revealed by PCR-DGGE fingerprinting

To explore the spatial heterogeneity of plankton communities in a deep artificial lake （Songhua Lake, China）, samples were collected at seven sites. Samples were investigated by denaturing gradient gel electrophoresis （DGGE） analysis of the PCR-amplified 16S and 18S rRNA genes and specific bands were sequenced. Cluster analysis of the DGGE profiles revealed that all of the samples grouped into two distinct clusters, in accordance with sampling site; while in each cluster, the divergence of sub-clusters correlated with sampling depth. Sequence analysis of selected dominant DGGE bands revealed that most sequenced phylotypes （84%） exhibited 〉97% similarity to the closest sequences in GenBank, and were affiliated with ten common freshwater plankton phyla （Proteobacteria, Actinobacteria, Bacteroidetes, Cyanobacteria, Bacillariophyta, Pyrrophyta, Cryptophyta, Ciliophora, Stramenopiles, and Rotifera）. Several of these groups are also found worldwide, indicating the cosmopolitan distribution of the phylotypes. The relationships between DGGE patterns and environmental factors were analyzed by redundancy analysis （RDA）. The results suggested that, total nitrogen, nitrate, nitrite, temperature were strongly correlated with the variation ammonia, and CODMn concentrations, and water in plankton composition.

Size-dependent spatio-temporal dynamics of eukaryotic plankton community near nuclear power plant in Beibu Gulf,China

Pico-and nano-eukaryotic plankton are important members of marine ecosystems.To understand their community structure and spatio-temporal variations in the Beibu Gulf,and to study the impact of Changjiang Nuclear Power Plant(CNPP)located in the northwest coast of the Hainan Island on the eukaryotic plankton,we studied these issues in the coastal water near CNPP bimonthly from February 2018 to January 2019 via 18 S Illumina sequencing.The results reveal a higher genetic alphadiversity and less beta-diversity of the plankton community in small-size(0.45-5μm and 5-20μm)fractions than in large-size(20-200μm and>20μm)fractions.The small-sized phytoplankton,including Micromonas(Chlorophyta)and Minutocellus(Bacillariophyta),as well as heterotrophic plankton,including Paraphysomonas(Chrysophyceae),Ellobiopsis(Dinoflagellates),and Syndiniales(Dinoflagellates),took up a considerable proportion in eukaryotic plankton community.In addition,it showed a slight temperature increase and no significant difference in eukaryotic plankton community between the outfall of CNPP and other sampling sites,suggesting that the impact of the thermal discharge from the CNPP on local eukaryotic plankton community was limited.

The community structure and seasonal dynamics of plankton in Bange Lake, northern Tibet, China

The seasonal variations in biomass, abundance, and species composition of plankton in relation to hydrography were studied in the saline Bange Lake, northern Tibet, China. Sampling was carried out between one to three times per month from May 2001 to July 2002. Salinity ranged from 14 to 146. The air and water temperature exhibited a clear seasonal pattern, and mean annual temperatures were approximately 4.8℃ and 7.3℃, respectively. The lowest water temperature occurred in winter from December to March at-2℃ and the highest in June and July at 17.7℃. Forty-one phytoplankton taxa, 21 zooplankton, and 5 benthic or facultative zooplankton were identifi ed. The predominant phytoplankton species were Gloeothece linearis, Oscillatoria tenuis, Gloeocapsa punctata, Ctenocladus circinnatus, Dunaliella salina, and Spirulina major. The predominant zooplankton species included H olophrya actra, Brachionus plicatilis, Daphniopsis tibetana, Cletocamptus dertersi, and A rctodiaptomus salinus. The mean annual total phytoplankton density and biomass for the entire lake were 4.52×10^7 cells/L and 1.60 mg/L, respectively. The annual mean zooplankton abundance was 52, 162, 322, and 57, 144 ind./L, in the three sublakes. The annual mean total zooplankton biomass in Lakes 1–3 was 1.23, 9.98, and 2.13 mg/L, respectively. The annual mean tychoplankton abundances in Bg1, 2, and 3 were 47, 67, and 654 ind./L. The annual mean tychoplankton biomass was 2.36, 0.16, and 2.03 mg/L, respectively. The zooplankton biomass（including tychoplankton） in the lake was 9.11 mg/L. The total number of plankton species in the salt lake was signifi cantly negatively correlated with salinity.

Seasonal variation of plankton communities influenced by environmental factors in an artificial lake

We evaluated the seasonal variation in plankton community composition in an artificial lake. We conducted microscopic analysis and denaturing gradient gel electrophoresis (DGGE) of PCR-amplified partial 16S rRNAand 18S rRNAgenes to characterize the plankton community. The clustering of unweighted pair group method with arithmetic mean (UPGMA) was then used to investigate the similarity of these plankton communities. DGGE fingerprinting revealed that samples collected at the different sites within a season shared high similarity and were generally grouped together. In contrast, we did not observe any seasonal variation based on microscopic analysis. Redundancy analysis (RDA) of the plankton operational taxonomic units (OTUs) in relation to environmental factors revealed that transparency was negatively correlated with the first axis (R=-0.931), and temperature and total phosphorus (TP) were positively correlated with the first axis (R=0.736 and R=0.660, respectively). In conclusion, plankton communities in the artificial lake exhibited significant seasonal variation. Transparency, phosphorus and temperature appear to be the major factors driving the differences in plankton composition.

Plankton respiration in the northern South China Sea during summer and winter

Plankton respiration is an important part of the carbon cycle and significantly affects the balance of autotrophic assimilation and heterotrophic production in oceanic ecosystems. In the present study, respiration rates of the euphotic zone plankton community（CR_（eu））, size fractionated chlorophyll a concentration（Chl a）, bacterial abundance（BAC）, and dissolved oxygen concentration（DO） were investigated during winter and summer in the northern South China Sea（n SCS）. The results show that there were obvious spatial and temporal variations in CR_（eu） in the n SCS（ranging from 0.03 to 1.10 μmol/（L·h））, CR_（eu） in winter（（0.53±0.27） μmol/（L·h）） was two times higher than that in summer（（0.26±0.20） μmol/（L·h））, and decreased gradually from the coastal zone to the open sea. The distribution of CR_（eu） was affected by coupled physical-chemical-biological processes, driven by monsoon events. The results also show that CR_（eu） was positively correlated with Chl a, BAC, and DO, and that BAC contributed the highest CR_（eu） variability. Furthermore, the results of the stepwise multiple linear regression suggest that bacteria and phytoplankton were the dominant factors in determining CR_（eu）（R^2 = 0.82, p〈0.05） in the n SCS. Based on this relationship, we estimated the integrated water column respiration rate（CRint） within 100 m of the investigated area, and found that the relationship between the biomass of the plankton community and respiration may be nonlinear in the water column.

Response of Photosynthetic Plankton Communities to Late-Holocene Climate Change on the Tibetan Plateau

Sediment records from Tibetan lakes record dramatic climatic variability of the Tibetan Plateau in NW China during the Holocene.Here we investigated ancient communities of photosynthetic microbial communities in

Study on Regulating Effects of "Aquatic Environment Protection Oriented Fishery" on Water Environment of Qiaodun Reservoir

In order to evaluate the regulating effect of ＂ aquatic environment protection oriented fishery＂ on aquatic ecosystem,the water quality,plankton community structure,biomass,diversity index,eutrophication index and ecosystem maturity evaluated with Ecopath model were compared from 2010 to 2012 in Qiaodun Reservoir of Zhejiang Province. It was indicated that the water quality had been improved obviously. The water transparency maximally increased by 130%,while TP,TN and CODCrwere reduced. The density and biomass of the plankton were decreased,so was the ratio of Cynobacteria in phytoplankton community. The Shannon-Weaver index was increased; the trophic level was decreased; the ecosystem maturity was improved. By all accounts,the ＂ aquatic environment protection oriented fishery＂ had positive effects on maintaining the balance of reservoir ecosystem and ensuring the safety of drinking water.

Metagenome-based analysis:A promising direction for plankton ecological studies

The plankton community plays an especially important role in the functioning of aquatic ecosystems and also in biogeochemical cycles. Since the beginning of marine research expeditions in the 1870s, an enormous number of planktonic organisms have been described and studied. Plankton investigation has become one of the most important areas of aquatic ecological study, as well as a crucial component of aquatic environmental evaluation. Nonetheless, traditional investigations have mainly focused on morphospecies composition, abundances and dynamics, which primarily depend on morphological identification and counting under microscopes. However, for many species/groups, with few readily observable characteristics, morphological identification and counting have historically been a difficult task. Over the past decades, microbiologists have endeavored to apply and extend molecular techniques to address questions in microbial ecology. These culture-independent studies have generated new insights into microbial ecology. One such strategy, metagenome-based analysis, has also proved to be a powerful tool for plankton research. This mini-review presents a brief history of plankton research using morphological and metagenome-based approaches and the potential applications and further directions of metagenomic analyses in plankton ecological studies are discussed. The use of metagenome-based approaches for plankton ecological study in aquatic ecosystems is encouraged.