Pulse repetition interval(PRI)modulation recognition and pulse sequence search are significant for effective electronic support measures.In modern electromagnetic environments,different types of inter-pulse slide rada...Pulse repetition interval(PRI)modulation recognition and pulse sequence search are significant for effective electronic support measures.In modern electromagnetic environments,different types of inter-pulse slide radars are highly confusing.There are few available training samples in practical situations,which leads to a low recognition accuracy and poor search effect of the pulse sequence.In this paper,an approach based on bi-directional long short-term memory(BiLSTM)networks and the temporal correlation algorithm for PRI modulation recognition and sequence search under the small sample prerequisite is proposed.The simulation results demonstrate that the proposed algorithm can recognize unilinear,bilinear,sawtooth,and sinusoidal PRI modulation types with 91.43% accuracy and complete the pulse sequence search with 30% missing pulses and 50% spurious pulses under the small sample prerequisite.展开更多
To obtain good trade-offs between complexity and performance onpeak-to-average power ratio (PAPR) reduction in orthogonal frequency division multiplexing (OFDM)using partial transmitting sequence (PTS) schemes, a trel...To obtain good trade-offs between complexity and performance onpeak-to-average power ratio (PAPR) reduction in orthogonal frequency division multiplexing (OFDM)using partial transmitting sequence (PTS) schemes, a trellis structure based PTS factor searchmethod is proposed. The trellis search is with a variant constraint length L_C, 1 ≤ L_C ≤ V-1,where V is the number of PTS subblocks. The method is to decide a PTS factor by searching all thepossible paths obtained by varying L_C consecutive factors. The trellis search can be viewed as ageneral PTS factor search model. If L_C = V-1, it is a full search, and if L_C = 1, it is aniterative search. Using different constraint lengths, trellis factor search PTS exhibits differentPAPR reduction performances. A larger L_C results in a better performance and L_C = V-1 results inthe optimum. However, a larger L_C requires more computation. This helps to choose a good trade-offbetween complexity and performance.展开更多
Chitinases catalyze the hydrolysis of chitin, a linear homopolymer of β-(1,4)-linked N-acetylglucosamine. The broad range of applications of chitinolytic enzymes makes their identification and study very promising. M...Chitinases catalyze the hydrolysis of chitin, a linear homopolymer of β-(1,4)-linked N-acetylglucosamine. The broad range of applications of chitinolytic enzymes makes their identification and study very promising. Metagenomic approaches offer access to functional genes in uncultured representatives of the microbiota and hold great potential in the discovery of novel enzymes, but tools to extensively explore these data are still scarce. In this study, we develop a chitinase mining pipeline to facilitate the comprehensive search of these enzymes in environmental metagenomic databases and also to explore phylogenetic relationships among the retrieved sequences. In order to perform the analyses, UniprotKB fungal and bacterial chitinases sequences belonging to the glycoside hydrolases (GH) family-18, 19 and 20 were used to generate 15 reference datasets, which were then used to generate high quality seed alignments with the MAFFT program. Profile Hidden Markov Models (pHMMs) were built from each seed alignment using the hmmbuild program of HMMER v3.0 package. The best-hit sequences returned by hmmsearch against two environmental metagenomic databases (Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis—CAMERA and Integrated Microbial Genomes—IMG/M) were retrieved and further analyzed. The NJ trees generated for each chitinase dataset showed some variability in the catalytic domain region of the metagenomic sequences and revealed common sequence patterns among all the trees. The scanning of the retrieved metagenomic sequences for chitinase conserved domains/signatures using both the InterPro and the RPS-BLAST tools confirmed the efficacy and sensitivity of our pHMM-based approach in detecting putative chitinases sequences. These analyses provide insight into the potential reservoir of novel molecules in metagenomic databases while supporting the chitinase mining pipeline developed in this work. By using our chitinase mining pipeline, a larger number of previously unannotated metagenomic chitinase sequences can be classified, enabling further studies on these enzymes.展开更多
In the purpose of dealing with the inconsistency of the machine dimensions in cell formation and layout problems,comprehensively taking into account such factors as alternative process routings, lot splitting, cell in...In the purpose of dealing with the inconsistency of the machine dimensions in cell formation and layout problems,comprehensively taking into account such factors as alternative process routings, lot splitting, cell input and output( I / O)locations,an integrated cell formation and layout model considering unequal machine dimensions is established which aims at minimizing intra-cell material handling cost,inter-cell material handling cost and cell expansion cost. A sequence pair-based scatter search algorithm is proposed which simultaneously adopts the roulette wheel selection operator as a subsets combination method to improve the quality of new solutions and the dynamic reference sets updating method to accelerate the convergence rate. Through the comparison of the results achieved by the proposed algorithm, Lingo and simulated annealing under different problem scales,the correctness of the model and the effectiveness of the algorithm are verified.展开更多
This paper proposes an optimal deployment method of heterogeneous multistatic radars to construct arc barrier coverage with location restrictions.This method analyzes and proves the properties of different deployment ...This paper proposes an optimal deployment method of heterogeneous multistatic radars to construct arc barrier coverage with location restrictions.This method analyzes and proves the properties of different deployment patterns in the optimal deployment sequence.Based on these properties and considering location restrictions,it introduces an optimization model of arc barrier coverage and aims to minimize the total deployment cost of heterogeneous multistatic radars.To overcome the non-convexity of the model and the non-analytical nature of the objective function,an algorithm combining integer line programming and the cuckoo search algorithm(CSA)is proposed.The proposed algorithm can determine the number of receivers and transmitters in each optimal deployment squence to minimize the total placement cost.Simulations are conducted in different conditions to verify the effectiveness of the proposed method.展开更多
The car sequencing problem(CSP)concerns a production sequence of different types of cars in the mixed-model assembly line.A hybrid algorithm is proposed to find an assembly sequence of CSP with minimum violations.Firs...The car sequencing problem(CSP)concerns a production sequence of different types of cars in the mixed-model assembly line.A hybrid algorithm is proposed to find an assembly sequence of CSP with minimum violations.Firstly,the hybrid algorithm is based on the tabu search and large neighborhood search(TLNS),servicing as the framework.Moreover,two components are incorporated into the hybrid algorithm.One is the parallel constructive heuristic(PCH)that is used to construct a set of initial solutions and find some high quality solutions,and the other is the small neighborhood search(SNS)which is designed to improve the new constructed solutions.The computational results show that the proposed hybrid algorithm(PCH+TLNS+SNS)obtains100best known values out of109public instances,among these89instances get their best known values with100%success rate.By comparing with the well-known related algorithms,computational results demonstrate the effectiveness,efficiency and robustness of the proposed algorithm.展开更多
sequences found in the huge,integrated database of protein sequences(Big Fantastic Database).In contrast,the existing nucleotide databases were not consolidated to facilitate wider and deeper homology search.Here,we b...sequences found in the huge,integrated database of protein sequences(Big Fantastic Database).In contrast,the existing nucleotide databases were not consolidated to facilitate wider and deeper homology search.Here,we built a comprehensive database by incorporating the non-coding RNA(ncRNA)sequences from RNAcentral,the transcriptome assembly and metagenome assembly from metagenomics RAST(MG-RAST),the genomic sequences from Genome Warehouse(GWH),and the genomic sequences from MGnify,in addition to the nucleotide(nt)database and its subsets in National Center of Biotechnology Information(NCBI).The resulting Master database of All possible RNA sequences(MARS)is 20-fold larger than NCBI’s nt database or 60-fold larger than RNAcentral.The new dataset along with a new split-search strategy allows a substantial improvement in homology search over existing state-of-the-art techniques.It also yields more accurate and more sensitive multiple sequence alignments(MSAs)than manually curated MSAs from Rfam for the majority of structured RNAs mapped to Rfam.The results indicate that MARS coupled with the fully automatic homology search tool RNAcmap will be useful for improved structural and functional inference of ncRNAs and RNA language models based on MSAs.MARS is accessible at https://ngdc.cncb.ac.cn/omix/release/OMIX003037,and RNAcmap3 is accessible at http://zhouyq-lab.szbl.ac.cn/download/.展开更多
Cell search is an important aspect for 3G long-term evolution (LTE). This article deals with cell search in the time-division-synchronou code-division multiple access (TD-SCDMA) LTE system. On the basis of the syn...Cell search is an important aspect for 3G long-term evolution (LTE). This article deals with cell search in the time-division-synchronou code-division multiple access (TD-SCDMA) LTE system. On the basis of the synchronization channel (SCH) and cell specific reference symbols (CSRSs), the proposed cell search procedure includes five stages: frame detection and coarse timing, coarse carrier frequency offset (CFO) estimation, fine timing, fine CFO estimation, and cell identification. The key features of the proposed method are as follows: first, the neighboring three cells' CSRSs are frequency division multiplexed (FD) to mitigate inter-cell interference. Second, the frequency domain differential cross-correlation, computed from CSRSs are maximally ratio combined for cell identification. Finally, the large set Kasami sequences are quadrature phase shift key (QPSK) modulated to be cell specific sequences (CSSs), to support a large number of target cells. Simulations show that the FD method is better than the code division multiplexed (CD) method.展开更多
The essential purpose of radar is to detect a target of interest and provide information concerning the target’s location,motion,size,and other parameters.The knowledge about the pulse trains’properties shows that a...The essential purpose of radar is to detect a target of interest and provide information concerning the target’s location,motion,size,and other parameters.The knowledge about the pulse trains’properties shows that a class of signals is mainly well suited to digital processing of increasing practical importance.A low autocorrelation binary sequence(LABS)is a complex combinatorial problem.The main problems of LABS are low Merit Factor(MF)and shorter length sequences.Besides,the maximum possible MF equals 12.3248 as infinity length is unable to be achieved.Therefore,this study implemented two techniques to propose a new metaheuristic algorithm based on Hybrid Modified Sine Cosine Algorithm with Cuckoo Search Algorithm(HMSCACSA)using Inverse Filtering(IF)and clipping method to achieve better results.The proposed algorithms,LABS-IF and HMSCACSA-IF,achieved better results with two large MFs equal to 12.12 and 12.6678 for lengths 231 and 237,respectively,where the optimal solutions belong to the skew-symmetric sequences.The MF outperformed up to 24.335%and 2.708%against the state-of-the-art LABS heuristic algorithm,xLastovka,and Golay,respectively.These results indicated that the proposed algorithm’s simulation had quality solutions in terms of fast convergence curve with better optimal means,and standard deviation.展开更多
基金supported by the National Natural Science Foundation of China(61801143,61971155)the National Natural Science Foundation of Heilongjiang Province(LH2020F019).
文摘Pulse repetition interval(PRI)modulation recognition and pulse sequence search are significant for effective electronic support measures.In modern electromagnetic environments,different types of inter-pulse slide radars are highly confusing.There are few available training samples in practical situations,which leads to a low recognition accuracy and poor search effect of the pulse sequence.In this paper,an approach based on bi-directional long short-term memory(BiLSTM)networks and the temporal correlation algorithm for PRI modulation recognition and sequence search under the small sample prerequisite is proposed.The simulation results demonstrate that the proposed algorithm can recognize unilinear,bilinear,sawtooth,and sinusoidal PRI modulation types with 91.43% accuracy and complete the pulse sequence search with 30% missing pulses and 50% spurious pulses under the small sample prerequisite.
文摘To obtain good trade-offs between complexity and performance onpeak-to-average power ratio (PAPR) reduction in orthogonal frequency division multiplexing (OFDM)using partial transmitting sequence (PTS) schemes, a trellis structure based PTS factor searchmethod is proposed. The trellis search is with a variant constraint length L_C, 1 ≤ L_C ≤ V-1,where V is the number of PTS subblocks. The method is to decide a PTS factor by searching all thepossible paths obtained by varying L_C consecutive factors. The trellis search can be viewed as ageneral PTS factor search model. If L_C = V-1, it is a full search, and if L_C = 1, it is aniterative search. Using different constraint lengths, trellis factor search PTS exhibits differentPAPR reduction performances. A larger L_C results in a better performance and L_C = V-1 results inthe optimum. However, a larger L_C requires more computation. This helps to choose a good trade-offbetween complexity and performance.
文摘Chitinases catalyze the hydrolysis of chitin, a linear homopolymer of β-(1,4)-linked N-acetylglucosamine. The broad range of applications of chitinolytic enzymes makes their identification and study very promising. Metagenomic approaches offer access to functional genes in uncultured representatives of the microbiota and hold great potential in the discovery of novel enzymes, but tools to extensively explore these data are still scarce. In this study, we develop a chitinase mining pipeline to facilitate the comprehensive search of these enzymes in environmental metagenomic databases and also to explore phylogenetic relationships among the retrieved sequences. In order to perform the analyses, UniprotKB fungal and bacterial chitinases sequences belonging to the glycoside hydrolases (GH) family-18, 19 and 20 were used to generate 15 reference datasets, which were then used to generate high quality seed alignments with the MAFFT program. Profile Hidden Markov Models (pHMMs) were built from each seed alignment using the hmmbuild program of HMMER v3.0 package. The best-hit sequences returned by hmmsearch against two environmental metagenomic databases (Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis—CAMERA and Integrated Microbial Genomes—IMG/M) were retrieved and further analyzed. The NJ trees generated for each chitinase dataset showed some variability in the catalytic domain region of the metagenomic sequences and revealed common sequence patterns among all the trees. The scanning of the retrieved metagenomic sequences for chitinase conserved domains/signatures using both the InterPro and the RPS-BLAST tools confirmed the efficacy and sensitivity of our pHMM-based approach in detecting putative chitinases sequences. These analyses provide insight into the potential reservoir of novel molecules in metagenomic databases while supporting the chitinase mining pipeline developed in this work. By using our chitinase mining pipeline, a larger number of previously unannotated metagenomic chitinase sequences can be classified, enabling further studies on these enzymes.
基金Shanghai Municipal Natural Science Foundation,China(No.10ZR1431700)
文摘In the purpose of dealing with the inconsistency of the machine dimensions in cell formation and layout problems,comprehensively taking into account such factors as alternative process routings, lot splitting, cell input and output( I / O)locations,an integrated cell formation and layout model considering unequal machine dimensions is established which aims at minimizing intra-cell material handling cost,inter-cell material handling cost and cell expansion cost. A sequence pair-based scatter search algorithm is proposed which simultaneously adopts the roulette wheel selection operator as a subsets combination method to improve the quality of new solutions and the dynamic reference sets updating method to accelerate the convergence rate. Through the comparison of the results achieved by the proposed algorithm, Lingo and simulated annealing under different problem scales,the correctness of the model and the effectiveness of the algorithm are verified.
基金supported by the National Natural Science Foundation of China(61971470).
文摘This paper proposes an optimal deployment method of heterogeneous multistatic radars to construct arc barrier coverage with location restrictions.This method analyzes and proves the properties of different deployment patterns in the optimal deployment sequence.Based on these properties and considering location restrictions,it introduces an optimization model of arc barrier coverage and aims to minimize the total deployment cost of heterogeneous multistatic radars.To overcome the non-convexity of the model and the non-analytical nature of the objective function,an algorithm combining integer line programming and the cuckoo search algorithm(CSA)is proposed.The proposed algorithm can determine the number of receivers and transmitters in each optimal deployment squence to minimize the total placement cost.Simulations are conducted in different conditions to verify the effectiveness of the proposed method.
基金Project(51435009) supported by the National Natural Science Foundation of ChinaProject(LQ14E080002) supported by the Zhejiang Provincial Natural Science Foundation of ChinaProject supported by the K.C.Wong Magna Fund in Ningbo University,China
文摘The car sequencing problem(CSP)concerns a production sequence of different types of cars in the mixed-model assembly line.A hybrid algorithm is proposed to find an assembly sequence of CSP with minimum violations.Firstly,the hybrid algorithm is based on the tabu search and large neighborhood search(TLNS),servicing as the framework.Moreover,two components are incorporated into the hybrid algorithm.One is the parallel constructive heuristic(PCH)that is used to construct a set of initial solutions and find some high quality solutions,and the other is the small neighborhood search(SNS)which is designed to improve the new constructed solutions.The computational results show that the proposed hybrid algorithm(PCH+TLNS+SNS)obtains100best known values out of109public instances,among these89instances get their best known values with100%success rate.By comparing with the well-known related algorithms,computational results demonstrate the effectiveness,efficiency and robustness of the proposed algorithm.
基金supported by grants from the National Key R&D Program of China(Grant No.2021YFF1200400)the Major Program of Shenzhen Bay Laboratory,China(Grant No.S201101001)+1 种基金the Shenzhen Science and Technology Innovation Program,China(Grant No.KQTD20170330155106581)the Griffith University Postgraduate Fellowship,Australia.
文摘sequences found in the huge,integrated database of protein sequences(Big Fantastic Database).In contrast,the existing nucleotide databases were not consolidated to facilitate wider and deeper homology search.Here,we built a comprehensive database by incorporating the non-coding RNA(ncRNA)sequences from RNAcentral,the transcriptome assembly and metagenome assembly from metagenomics RAST(MG-RAST),the genomic sequences from Genome Warehouse(GWH),and the genomic sequences from MGnify,in addition to the nucleotide(nt)database and its subsets in National Center of Biotechnology Information(NCBI).The resulting Master database of All possible RNA sequences(MARS)is 20-fold larger than NCBI’s nt database or 60-fold larger than RNAcentral.The new dataset along with a new split-search strategy allows a substantial improvement in homology search over existing state-of-the-art techniques.It also yields more accurate and more sensitive multiple sequence alignments(MSAs)than manually curated MSAs from Rfam for the majority of structured RNAs mapped to Rfam.The results indicate that MARS coupled with the fully automatic homology search tool RNAcmap will be useful for improved structural and functional inference of ncRNAs and RNA language models based on MSAs.MARS is accessible at https://ngdc.cncb.ac.cn/omix/release/OMIX003037,and RNAcmap3 is accessible at http://zhouyq-lab.szbl.ac.cn/download/.
基金the cooperative research between Beijing University of Posts and Telecommunications and TD Technology Ltd
文摘Cell search is an important aspect for 3G long-term evolution (LTE). This article deals with cell search in the time-division-synchronou code-division multiple access (TD-SCDMA) LTE system. On the basis of the synchronization channel (SCH) and cell specific reference symbols (CSRSs), the proposed cell search procedure includes five stages: frame detection and coarse timing, coarse carrier frequency offset (CFO) estimation, fine timing, fine CFO estimation, and cell identification. The key features of the proposed method are as follows: first, the neighboring three cells' CSRSs are frequency division multiplexed (FD) to mitigate inter-cell interference. Second, the frequency domain differential cross-correlation, computed from CSRSs are maximally ratio combined for cell identification. Finally, the large set Kasami sequences are quadrature phase shift key (QPSK) modulated to be cell specific sequences (CSSs), to support a large number of target cells. Simulations show that the FD method is better than the code division multiplexed (CD) method.
文摘The essential purpose of radar is to detect a target of interest and provide information concerning the target’s location,motion,size,and other parameters.The knowledge about the pulse trains’properties shows that a class of signals is mainly well suited to digital processing of increasing practical importance.A low autocorrelation binary sequence(LABS)is a complex combinatorial problem.The main problems of LABS are low Merit Factor(MF)and shorter length sequences.Besides,the maximum possible MF equals 12.3248 as infinity length is unable to be achieved.Therefore,this study implemented two techniques to propose a new metaheuristic algorithm based on Hybrid Modified Sine Cosine Algorithm with Cuckoo Search Algorithm(HMSCACSA)using Inverse Filtering(IF)and clipping method to achieve better results.The proposed algorithms,LABS-IF and HMSCACSA-IF,achieved better results with two large MFs equal to 12.12 and 12.6678 for lengths 231 and 237,respectively,where the optimal solutions belong to the skew-symmetric sequences.The MF outperformed up to 24.335%and 2.708%against the state-of-the-art LABS heuristic algorithm,xLastovka,and Golay,respectively.These results indicated that the proposed algorithm’s simulation had quality solutions in terms of fast convergence curve with better optimal means,and standard deviation.