The Variation of Plankton Community Structure in Artificial Reef Area and Adjacent Waters in Haizhou Bay

Plankton are an important component of marine protected areas(MPAs),and its communities would require much smaller interpatch distances to ensure connection among MPAs.According to the survey from MPAs dominated by artificial reefs and adjacent waters(estuary area(EA),aquaculture area(AA),artificial reef area(ARA),natural area(NA)and comprehensive effect area(CEA))in Haizhou Bay in spring and autumn,we analyzed phyto-zooplankton composition,abundance and biomass,and correlation with hydrologic variables to gain information about the forces that structure the plankton.The results showed that the dominant zooplankton were copepods(spring,98.9%;autumn,94.2%),while the phytoplankton were mainly composed of Bacillariophyta(spring,61.8%;autumn,95.6%).The RDA results showed that temperature,salinity and depth highly associated with the distribution and composition of plankton species among the habitats than other factors in spring;temperature,Chla and DO had the strongest influence in autumn.The zooplankton in the ARA and AA ecosystems basically contained the same species as those in other habitats,and each habitat also exhibited a relatively unique combination of plankton species.The structures of the EA zooplankton in spring and the EA phytoplankton in both seasons were much different than other habitats,which may have been caused by factors such as currents and tides.We concluded that there exists similarity of the plankton community between artificial reef area and adjacent waters,whereas the EAs may be relatively independent systems.Therefore,these interaction between plankton community should be considered when designing MPA networks,and ocean circulations should be considered more than the environmental factors.

深海环境海洋生态系统监测与修复新技术

The United Nations(UN)’s call for a decade of“ecosystem restoration”was prompted by the need to address the extensive impact of anthropogenic activities on natural ecosystems.Marine ecosystem restoration is increasingly necessary due to increasing habitat degredation in deep waters(>200 m depth).At these depths,which are far beyond those accessible by divers,only established and emerging robotic platforms such as remotely operated vehicles(ROVs),autonomous underwater vehicles(AUVs),landers,and crawlers can operate through manipulators and multiparametric sensor arrays(e.g.,optoacoustic imaging,omics,and environmental probes).The use of advanced technologies for deep-sea ecosystem restoration can provide:①high-resolution three-dimensional(3D)imaging and acoustic mapping of substrates and key taxa,②physical manipulation of substrates and key taxa,③real-time supervision of remote operations and long-term ecological monitoring,and④the potential to work autonomously.Here,we describe how robotic platforms with in situ manipulation capabilities and payloads of innovative sensors could autonomously conduct active restoration and monitoring across large spatial scales.We expect that these devices will be particularly useful in deep-sea habitats,such as①reef-building cold-water corals,②soft-bottom bamboo corals,and③soft-bottom fishery resources that have already been damaged by offshore industries(i.e.,fishing and oil/gas).

Catch organism assemblages along artificial reefs area and adjacent waters in Haizhou Bay

To better understand the community patterns mediated by connectivity in artificial reefs of coastal areas, it is necessary to understand the distribution and coexistence of organisms with artificial reefs area and adjacent waters. This study was conducted to examine main catches assemblages collected by trawls in Haizhou Bay,which included five habitats: the artificial reef area(AR), aquaculture area(AA), natural area(NA), estuary area(EA) and comprehensive effect area(CEA). The result shows that the total abundances of species in the five habitats were highly different(univariate PERMANOVA: P = 0.001, n = 24), but some species were also unique in their habitat(e.g. Scapharca subcrenata and Glossaulax didyma in AA). The body size distribution of specific species between habitats are different. For Collichthys lucidus, their body size in AR(14.63 cm ± 1.64 cm) and EA(14.3 cm ± 0.85 cm) is higher than that in NA(10.65 cm ± 1.64 cm), CEA(11.28 cm ± 1.85 cm) and AA(12.1 cm ±0.43 cm), which indicates the potential connection from AR to EA mediated by their adult population. We concluded that artificial reefs in AR can be considered key components that have the ability to support species assemblages in adjacent habitats. This study has implications for the conservation and monitoring of species assemblages in coastal areas in terms of that artificial reefs can be applied in different stages of habitat protection implementation and in different combinations of scenarios.

Flow Field Characteristics of Multi-Trophic Artificial Reef Based on Computation Fluid Dynamics

On the basis of computational fluid dynamics,the flow field characteristics of multi-trophic artificial reefs,including the flow field distribution features of a single reef under three different velocities and the effect of spacing between reefs on flow scale and the flow state,were analyzed.Results indicate upwelling,slow flow,and eddy around a single reef.Maximum velocity,height,and volume of upwelling in front of a single reef were positively correlated with inflow velocity.The length and volume of slow flow increased with the increase in inflow velocity.Eddies were present both inside and backward,and vorticity was positively correlated with inflow velocity.Space between reefs had a minor influence on the maximum velocity and height of upwelling.With the increase in space from 0.5 L to 1.5 L(L is the reef lehgth),the length of slow flow in the front and back of the combined reefs increased slightly.When the space was 2.0 L,the length of the slow flow decreased.In four different spaces,eddies were present inside and at the back of each reef.The maximum vorticity was negatively correlated with space from 0.5 L to 1.5 L,but under 2.0 L space,the maximum vorticity was close to the vorticity of a single reef under the same inflow velocity.

Drivers,Trends,and Patterns of Changing Vegetation-greenness in Nansha Islands,China from 2016 to 2022

Changes in vegetation status generally also represents changes in the ecological health of islands and reefs(IRs).However,studies are limited of drivers and trends of vegetation change of Nansha Islands,China and how they relate to climate change and human activities.To resolve this limitation,we studied changes to the Normalized Difference Vegetation Index(NDVI)vegetation-greenness index for 22 IRs of Nansha Islands during normal and extreme conditions.Trends of vegetation greenness were analyzed using Sen's slope and Mann-Kendall test at two spatial scales(pixel and island),and driving factor analyses were performed by time-lagged partial correlation analyses.These were related to impacts from human activities and climatic factors under normal(temperature,precipitation,radiation,and Normalized Difference Built-up Index(NDBI))and extreme conditions(wind speed and latitude of IRs)from 2016 to 2022.Results showed:1)among the 22 IRs,NDVI increased/decreased significantly in 15/4 IRs,respectively.Huayang Reef had the highest NDVI change-rate(0.48%/mon),and Zhongye Island had the lowest(–0.29%/mon).Local spatial patterns were in one of two forms:dotted-form,and degradation in banded-form.2)Under normal conditions,human activities(characterized by NDBI)had higher impacts on vegetation-greenness than other factors.3)Under extreme conditions,wind speed(R^(2)=0.2337,P<0.05)and latitude(R^(2)=0.2769,P<0.05)provided limited explanation for changes from typhoon events.Our results provide scientific support for the sustainable development of Nansha Islands and the United Nations‘Ocean Decade’initiative.

Characterisation of the Bacteria and Archaea Community Associated with Wild Oysters, At Three Possible Restoration Sites in the North Sea

With 85% of the global oyster reefs destroyed, there is an urgent need for large scale restoration to benefit from the ecosystem services provided by biogenic oyster reefs and their associated biodiversity, including microorganisms that drive marine biogeochemical cycles. This experiment established a baseline for the monitoring of the bacterial and archaeal community associated with wild oysters, using samples from their immediate environment of the Voordelta, with cohabiting Crassostrea gigas and Ostrea edulis, Duikplaats with only C. gigas attached to rocks, and the Dansk Skaldyrcentre, with no onsite oysters. The microbial profiling was carried out through DNA analysis of samples collected from the surfaces of oyster shells and their substrate, the sediment and seawater. Following 16S rRNA amplicon sequencing and bioinformatics, alpha indices implied high species abundance and diversity in sediment but low abundance in seawater. As expected, Proteobacteria, Bacteroidetes, Firmicutes and Thaumarchaeota dominated the top 20 OTUs. In the Voordelta, OTUs related to Colwellia, Shewanella and Psychrobium differentiated the oysters collected from a reef with those attached to rocks. Duikplaats were distinct for sulfur-oxidizers Sulfurimonas and sulfate-reducers from the Sva 0081 sediment group. Archaea were found mainly in sediments and the oyster associated microbiome, with greater abundance at the reef site, consisting mostly of Thaumarchaeota from the family Nitrosopumilaceae. The oyster free site displayed archaea in sediments only, and algal bloom indicator microorganisms from the Rhodobacteraceae, Flavobacteriaceae family and genus [Polaribacter] huanghezhanensis, in addition to the ascidian symbiotic partner, Synechococcus. This study suggests site specific microbiome shifts, influenced by the presence of oysters and the type of substrate.

水深条件对单桩基础局部冲刷和流场结构的影响

在清水条件下,对单桩基础周围的局部冲刷和流场结构进行了三维数值模拟研究。结果表明,冲刷深度、冲刷坑尺寸和流场结构受相对水深(h/D=0.5~2.5)的影响显著。随着h/D的减小,单桩周围的冲刷深度单调递减,且桩前和桩后冲刷深度的减小幅度大于桩侧的减小幅度;随着h/D的减小,桩前半径和桩侧半径均单调递减,但桩侧半径的变化速率略慢。这些变化趋势均与桩前马蹄涡和下降流动以及桩后上升流动随相对水深的减小明显减弱有关。此外,相对水深较小时,冲刷坑下游的尾涡更贴近床面,导致下游堆积体的高度较低。

Coral reef ecological pump for gathering and retaining nutrients and exporting carbon:a review and perspectives

How coral reefs with high productivity and biodiversity can flourish in oligotrophic tropical oceans has inspired substantial research on coral reef ecosystems.Increasing evidence shows that similar to water in an oasis in the desert,there are stable nutrient supplies to coral reefs in oligotrophic oceans.Here,with emphasis on the fluxes of organic matter,we summarize at the ecosystem level(1)the multiple input pathways of external nutrients,(2)the storage of nutrients in reef organisms,(3)the efficient retaining and recycling of dissolved and particulate organic matter within coral reef ecosystems,(4)the distinctly high phytoplankton productivity and biomass inside and near oceanic coral reefs,and(5)the export of reef-related organic carbon to adjacent open oceans.These properties enable coral reefs to function as ecological“pumps”for gathering nutrients across ecosystems and space,retaining and recycling nutrients within the ecosystem,supporting high phytoplankton productivity,and exporting organic carbon to adjacent open oceans.Particularly,the high phytoplankton productivity and biomass make waters around coral reefs potential hotspots of carbon export to ocean depths via the biological pump.We demonstrate that organic carbon influx is vital for coral reef ecosystems’carbon budget and carbon export.The concept of the coral reef ecological pump provides a framework to improve the understanding of the functioning of the coral reef ecosystem and its responses to disturbance.Prospects of the coral reef ecological pump in coral reef studies are discussed in changing oceans driven by human activities and global change in the Anthropocene.

不同水深条件下海上风机群桩基础局部冲刷特性

在清水状态下,对不同水深和间距比条件下的群桩局部冲刷进行了三维数值模拟研究。结果表明,水深(h)对冲刷特性的影响与间距比(G/D)有关。当G/D=2、4和5时,随着水深的增大,平衡冲刷深度小幅增大,当G/D=3时,随着水深的增大,平衡冲刷深度显著增大。随着间距比的增大,平衡冲刷深度非单调变化。G/D=2工况的平衡冲刷深度最大,群桩冲刷坑形成一个整体;G/D=3工况的平衡冲刷深度最小,下游桩柱周围冲刷不明显;G/D=4、5工况的平衡冲刷深度较大,且随间距比的增大而减小,各个桩柱的冲刷坑独立。

Sedimentary nitrogen dynamics in a coastal reef area with relatively high nitrogen concentration

The migration and transformation of nitrogen(N)in sediments play an important role in regulating the N concentration and nutrient structures in shallow seas.However,studies of sedimentary N dynamics are rarely focused on carbonate sediments,although these account for about 40%of the continental shelf area.Thus,the regulation mechanisms of the N dynamics in the carbonate sands of coral reefs are not clear.Taking the coral reef area of Weizhou Island,which has a relatively high N concentration,as the research object,we conducted a series of flow-through reactor experiments to investigate the fluxes of different N forms at the interface of sediment and seawater and their regulation mechanism by environmental factors.The fluxes of dissolved inorganic and organic N(DIN and DON)at different stations were-0.39-0.12 mmol/(m^(2)·h) and-0.18-0.39 mmol/(m^(2)·h),respectively.Denitrification(0.11-0.25 mmol/(m^(2)·h) was closely coupled to nitrification,which was limited by the availability of organic matter and its degradation product(i.e.,NH_(4)^(+)).Thus,the excessive NO_(3)^(-) might be reduced to NH4+by dissimilatory nitrate reduction to ammonium,rather than to N_(2) by denitrification.NO_(3)^(-) reduction peaked at intermediate advection rates(96 L/(m^(2)·h)) and flow path lengths(10 cm),but the release of DON also peaked at the same condition.In addition,climate warming would significantly affect sedimentary N dynamics at Weizhou Island.These results may help address the broader issue of the N cycle in coral reef eco systems under the dual pressure of climate warming and anthropogenic activities,and these results are beneficial to coral reef protection and local ecological management.

Meso-mechanical anisotropy and fracture evolution of reef limestones from the Maldives Islands and the South China Sea

Reef limestone is a biogenic sedimentary rock widely distributed in coral reef areas, acting as an important foundation for coast construction. Due to its special biogenic origin, reef limestone is different from conventional rocks both in terms of rock structure and mechanical properties. In this study, mesoscale uniaxial compression experiments with five different loading directions were conducted on two kinds of reef limestones from the Maldives Islands and the South China Sea, respectively. The real-time high-resolution videos and images of failure processes were recorded simultaneously to investigate the fracture evolution and fracture surface roughness of reef limestones. It demonstrated that the reef limestones belonged to extremely soft to soft rocks, and their uniaxial compressive strength (UCS) values fluctuated with high discreteness. The mesoscale mechanical properties of reef limestones were highly anisotropic and mainly controlled by pore structure. The occurrence of dissolution pores in reef limestone tended to intensify mechanical anisotropy. With the integration of the fracture initiation and propagation features of reef limestones, it is supposed that the intrinsic mechanism of anisotropy was probably attributed to the differences in coral growth direction and dissolution. Furthermore, the quantified fracture surface roughness was revealed to have a good consistency with density and UCS for the reef limestones from the South China Sea. The findings are helpful for providing theoretical and experimental references for engineering construction in coral reef areas.

An investigation of the morphodynamic change of reef islands under monochromatic waves

The persistence and habitability of coral reef islands in future extreme oceanographic conditions has received increasing attention in the recent decade,concerning that the sea level rise(SLR)and more frequent and intense storms in the context of global climate change are expected to destabilize those islands.Here,we conduct a set of wave-flume laboratory experiments focusing on the morphodynamic change of reef islands to varying ocean forcing conditions(wave height and SLR).Subsequently,a phase-resolving XBeach numerical model is adopted to simulate the monochromatic wave process and its associated sediment dynamics.The adopted model is also firstly validated by laboratory experimental results as reported in this study.It is then used to examine the impacts of island morphological factors(island width,island height,island location and island side slope)on the island migration.The combined laboratory/physical and numerical experiment outputs suggest that reef islands can accrete vertically in response to the sea level rise and the increased storminess.

Microbiome Engineering:A Promising Approach to Improve Coral Health

The world’s coral reefs are threatened by the cumulative impacts of global climate change and local stressors.Driven largely by a desire to understand the interactions between corals and their symbiotic microorganisms,and to use this knowledge to eventually improve coral health,interest in coral microbiology and the coral microbiome has increased in recent years.In this review,we summarize the role of the coral microbiome in maintaining a healthy metaorganism by providing nutrients,support for growth and development,protection against pathogens,and mitigation of environmental stressors.We explore the concept of coral microbiome engineering,that is,precise and controlled manipulation of the coral microbiome to aid and enhance coral resilience and tolerance in the changing oceans.Although coral microbiome engineering is clearly in its infancy,several recent breakthroughs indicate that such engineering is an effective tool for restoration and preservation of these valuable ecosystems.To assist with identifying future research targets,we have reviewed the common principles of microbiome engineering and its applications in improving human health and agricultural productivity,drawing parallels to where coral microbiome engineering can advance in the not-too-distant future.Finally,we end by discussing the challenges faced by researchers and practitioners in the application of microbiome engineering in coral reefs and provide recommendations for future work.

Using seismic and well data to constrain hydrocarbon trap potential of offshore Lamu Basin, Kenya

Structural analysis of seismic data, combined with well data, provides information for hydrocarbon exploration in a prospective basin. These techniques have been employed in the offshore Lamu Basin to characterize structural and stratigraphic setting of carbonate reefs and assess structural deformation and its effect on trapping mechanisms in the offshore basin. Structural interpretation was based on seismic and well data. A combination of microfossil, nannofossil and palynomorph data provided broad age-control for the stratigraphic interpretations. Seismic amplitude brightening attribute was used for tracing structural continuity. Faulted anticlinal traps were formed in the Upper Cretaceous and Tertiary periods. There are inversion features with recent extensional faulting. Favourable structural traps are in the near coastal region. The carbonate reefs in the offshore basin are interpreted from the Early Paleocene to Miocene periods. These reefs formed in the near coastal region, are likely to be quality traps/reservoirs for hydrocarbon accumulation. Five main structures are identified from the depth seismic maps for the Early Paleocene, Late Paleocene and Early Miocene. The reef front may have subsided early, the overlying shales offering the sealing mechanisms. The Davie-Walu transformation was likely to affect the trapping mechanism in the central and southern regions of offshore Lamu Basin. The study provides better understanding of the carbonate reefs’ hydrocarbon potential and trapping mechanisms in the offshore basin.

Stressed Coral Reef Identification Using Deep Learning CNN Techniques

Deep learning is a machine learning technique that allows the computer to process things that occur naturally to humans.Today,deep learning techniques are commonly used in computer vision to classify images and videos.As a result,for challenging computer vision problems,deep learning provides state of the art solutions to it.Coral reefs are an essential resource of the earth.A new study finds the planet has lost half of its coral reefs since 1950.It is necessary to restore and prevent damage to coral reefs as they play an important role in maintaining a balance in the marine ecosystem.This proposed work helps to prevent the corals from bleaching and restore them to a healthy condition by identifying the root cause of the threats.In the proposed work,using deep learning CNN techniques,the images are classified into Healthy and Stressed coral reefs.Stressed coral reefs are an intermediate state of coral reef between healthy and bleached coral reefs.The pre-trained models Resnet50 and Inception V3 are used in this study to classify the images.Also,a proposed CNN model is built and tested for the same.The results of Inception V3 and Resnet50 are improved to 70%and 55%by tuning the hypermeters such as dropouts and batch normalisation.Similarly,the proposed model is tuned as required and obtains a maximum of up to 90%accuracy.With large datasets,the optimum amount of neural networks and tuning it as required brings higher accuracy than other methods.

澳大利亚悉尼Long Reef Beach中新世古土壤岩石磁学特征及环境意义

本文对发育在澳大利亚悉尼附近的Long Reef Beach中新世古土壤剖面进行了系统的岩石磁学研究,测量了磁化率、饱和磁化强度、饱和等温剩磁、非磁滞剩磁等常温磁学参数和磁滞回线,并对所有样品进行了热磁分析.实验结果表明:全新世软土层主要磁性矿物为MD颗粒磁铁矿,磁性矿物含量与黄土高原黄土层相当.中新世老成土层随地层深度增加主要磁性矿物由磁铁矿转变为磁赤铁矿,随着磁铁矿向磁赤铁矿的转化,开始出现赤铁矿;磁性矿物粒径分布较广,以PSD颗粒为主,其次为SD颗粒,同时含有少量MD颗粒;磁性矿物含量高于黄土高原强发育古土壤层.中新世红土矿层主要磁性矿物为赤铁矿,同时含有少量磁赤铁矿和针铁矿,属于铁的富集层,赤铁矿以SD颗粒为主,含少量PSD和MD颗粒.Long Reef Beach中新世古土壤形成时期,对应着一种全球性高温多雨气候,地表化学风化作用十分强烈.丰富的降水,导致中新世老成土层发生淋溶作用,磁铁矿在向下淋溶迁移过程中逐渐氧化为磁赤铁矿和赤铁矿,铁氧化物最终在红土矿层淀积,磁赤铁矿经高温压实作用再结晶转化为赤铁矿.磁性矿物转化过程可概括为磁铁矿—磁赤铁矿化的磁铁矿—磁赤铁矿—赤铁矿,其中部分磁赤铁矿具有热稳定性,在空气(氩气)环境中加热到700℃未发生转化.

Reef Check方法在三亚珊瑚礁区域的应用结果分析

在介绍Reef Check调查方法的基础上，首次在中国运用Reef Check方法对海南省三亚大东海区域的珊瑚礁进行了调查，并分析其珊瑚礁生物群落的基本结构、珊瑚礁地质类型及分布等方面的状况以及所反映的区域性生境特征，指出了Reef Check调查方法的良好应用性。

聚焦波浪在浅堤上传播变形高精度数值模拟研究

基于开源程序REEF3D,通过建立高精度二维数值波浪水槽,系统研究了聚焦波浪在浅堤上传播变形的规律,着重分析了聚焦波浪通过浅堤的水动力过程及能量变化规律,讨论了不同波浪要素对聚焦波浪传播特性的影响。除此之外,还考虑了双浅堤布置对聚焦波浪传播变形的影响。研究结果表明:极端波浪通过浅堤时,堤顶水深越小,波浪主频能量衰减越显著。在给定堤顶水深条件下,聚焦点与浅堤的相对位置对聚焦波浪能量的衰减影响较小。在双浅堤布置条件下,随着浅堤间距的增加,上下游浅堤的相互影响逐渐减弱,高频段的波浪能量也随之减小。

Paleogene and Early Neogene Lacustrine Reefs in the Western Qaidam Basin, China

Typical reefs in the Paleogene and early Neogene strata of the Qaidam Basin, Tibetan Plateau, China, reveal their internal structures and sedimentation environments and consist mainly of algal reef, stromatolite reef and thrombolite reef with distinct reef structures, fore-reef, back-reef and reef-plateau. The fore-reef is characterized by a combination of pinnacle reef, thrombolite and algal reef. The back reef is composed of stromatolite reef and algal reef. The pinnacle reefs (micro-atoll), most of which are several tens of centimeters in diameter (whereas some exceptionally big ones are over 200 cm in diameter), and several tens of centimeter to 2 m in height, are situated on the far front-edge of the reef; the pinnacle reef is also often of recumbent form with a gravel-filled circular hole in the center. The algal reef is in the form of dome and irregular beds, and filled with algal detritus, ostracodes, spirorbis fossils, ooid and terrigenous debris, and worm traces; cavities and scour marks are often developed. The algal reef is gray commonly when fresh and weathers to a brown color. The lacustrine thrombolite in the Qaidam Basin is light gray or deep gray when fresh, white-gray or brown when weathered, dense and homogeneous with abundant pores filled by oil and bitumen. Observed under the microscope, the thrombolite consists mainly of brown or brown-black clots with a little algal debris, ooid, pellet, ostracodes, spirorbis fossils and terrigenous debris, in some cases, terrigenous debris, even gravel, is abundant. Many features of the thrombolite suggest that it is formed in a high-energy envkonment. The stromatolite reefs developed on the lacustrine algal reef in the Qaidam Basin are very complex whether in shape or in internal structure. The simplest ones form laminated layers and the most complex ones have intensely branching structures. The size is also variable.

Quantitative Evaluation of the Sea-level Drop at the End-Permian: Based on Reefs

The amplitude of pre-Quaternary sea level drop, H, can be calculated by usingthe formula H = D + To, where To is the original thickness from the top of the tidal deposits onthe reef core to the bottom of the tidal deposits on the reef front, or to the bottom of the ancientmeteoric vadose zone, or to the edge of the mixed-water dolostone zone. The identity and similaritybetween the sea-level drop amplitudes calculated from different reefs far away from each otherindicates that such sea-level changes are eustatic rather than relative changes. Evidence of anend-Permian sea-level drop has been found on the Changxingian (i.e. the end of the Palaeofusulinazone) reefs at Ziyun in South China, including algal laminated deposits, sabkha-related dolostone,desiccation cracks, dissolution collapse breccia. According to calculation based on the meteoricdissolution zone of the reef-core sequence at Ziyun, Guizhou province, the amplitude of thesea-level drop at the end-Permian is about 89.3 m. Calculation via the dolomitized upper part of theChangxingian reef in Lichuan, Hubei Province, yields an 88.9 m amplitude of the sea-level drop atthe end-Permian. Comparison shows that the sea-level drop recorded in the two distantly locatedreefs may be of eustatic type. So the amplitude of the sea level drop of the Tethys Sea at theend-Permian might be at least 89.3 m.