Development and Characterization of Elite Doubled Haploid Lines from Two Indica Rice Hybrids

Despite significant yield advantage over inbred rice, the adoption rate of hybrid rice in India is very low due to the high seed cost and poor quality of the produce. To alleviate the problem, we initiated a doubled haploid （DH） breeding approach to develop new lines from two elite indica rice hybrids （CRHR5 and CRHR7） through rapid fixation of homozygosity in the recombinants. In vitro culture of the rice anthers resulted in 243 and 186 fertile DH lines of CRHR5 and CRHR7, respectively. Flow cytometric and pollen fertility analyses confirmed the DH ploidy status of the regenerations. Morpho-agronomic evaluation revealed 100% uniformity and stability for all the characters in the DH lines of both hybrids. Nineteen promising DH lines of each hybrid were advanced to A2 generation for yield evaluation. The yield levels of the DH lines ranged from 5 097-6 965 kg/hm^2 for CRHR5 and 5 141-7 235 kg/hm^2 for CRHR7, which were at par or higher than the parental hybrids. Physico-chemical characterization and cooking quality analyses revealed significant and acceptable values for grain length and width, alkali spreading value, amylose content and water uptake ratio of the selected DH lines. Three DH lines, CR5-10, CR5-49, CR5-61 from CRHR5, and four DH lines, CR7-5, CR7-7, CR7-12 and CR7-52 from CRHR7, showed significant grain yield and quality characteristics and have been recommended for multi-location trials for subsequent release as new indica doubled haploid rice varieties.

Effect of Temperature on Pollen Fertility in Inter-Subspecific Rice Hybrids

Seventeen rice varieties and hybrids of different types (indica, japonica, javanica, indica hybrid, japonica hybrid and inter-subspecific hybrid) were evaluated to determine the effect of temperature on pollen fertility in inter-subspecfic hybrids. The pollen fertility of inter-subspecific hybrids was greatly reduced when average daily temperature dropped to 22.0 - 23.0℃ at meiosis stage, and the extent of pollen fertility reduction varied greatly with respect to different hybrids. However, the pollen fertility reduction of indica and japonica hybrids and conventional varieties was not obvious under the same regime of temperature conditions. When the average daily temperature dropped to 20℃, the pollen development of conventional varieties and hybrids was also affected. Correlation analysis revealed that there existed a positive correlation between pollen fertility and average daily temperature. A significant difference (P<0.01) was also found between the two correlation coefficients i.e. inter-subspecific hybrids and conventional varieties. Temperature at meiosis stage of pollen mother cell was a key factor in pollen developing, and the pollen fertility of inter-subspecific hybrids was more sensitive to low temperature than that of traditional variety.

Breeding and Application Techniques of a New Rice Variety Liliang-you 3822 with High Yield and Disease Resistance

Liliangyou 3822 is a novel indica hybrid rice variety that exhibits disease resistance,high yield,lodging resistance,and late maturity.It employs a self-selected two-line sterile line,Li 38S,and a self-selected restorer line,R22.This variety was subjected to a regional test of indica late-maturing groups in the middle and lower reaches of the Yangtze River in 2020.The results demonstrated that the average yield of the variety was 9.95 t/hm 2,which was 10.67%higher than that of the control Fengliangyou 4,indicating a highly significant yield increase.In the continuous test in 2021,the average yield was 9.74 t/hm 2,representing a 6.52%increase over the control,which also exhibited a significant increase.Finally,the average yield of the two years regional test was 9.84 t/hm 2,which was 8.58%higher than that of the control.In the 2021 production test,the average yield of the variety was 9.32 t/hm 2,which was 12.19%higher than that of the control,indicating a remarkably significant yield increase.In 2022,the variety was validated by the National Crop Variety Approval Committee(GSD 20220143).

Dry Breeding and Dry Planting Techniques for Indica Hybrid Rice in Karst Mountain Areas of Gejiu City

Based on the arable land situation in Gejiu City,upland dry planting of indica hybrid rice is being expanded in Karst mountain areas with a rainfall of over 1400 mm and an altitude of 1100-1600 m to develop grain production.This paper gives a specific description of hybrid rice upland dry seedling technology,upland transplanting technology,fertilization technology,field management,weed prevention and control technology,and disease and pest control.

Comparative Analysis on Rice Plant Type of Two Super Hybrids and Shanyou63

The characteristics of plant type and physiological indices for photosynthesis were analyzed using two super hybrid rices, Liangyoupeijiu and LiangyouE32 as materials, and an indica hybrid, Shan-you63 as a control. Based on the present analysis and various theories and breeding practices on rice plant type, a model of plant ideotype for super hybrid rice (indica) in the lower reaches of Yangtze River Valley was proposed. This was: a length of 35 - 40 cm for top leaf with a width of 2 cm, and that of 50 - 55 cm and 55-60 cm, respectively, for the second and third leaves from top, meanwhile, having a leaf angle of 5°, 10°and 15° respectively, and a curvature of 1 - 1. 5 cm-1for the leaf face at heading stage; the uppermost three leaves keeping their activities for as long as 70 d, which could lead a LAI of 3 at full ripeness; loose plant type with thin (SLW=2.5-3 g cm-2, dry weight) and curve-slant leaves during early growing stage, and compact plant type by thick (SLW=4 - 5 g cm-2) and erect leaves during the middle and late growing stages; with a coefficient of light extinction of 0. 3 - 0. 4, which allowed for an optimal LAI high of 8-10 during the middle growth period; plant height of 110-120 cm, with 2 - 4 cm basal internode and a long uppermost internode occupying 45% of total stem length; 25 - 28 cm panicle with 8-10 spikelets per centimeter showing bend-type in ripening; a rich chlorophyll which led to a high net photosynthetic rate, and tolerance to light shading and photooxidation which is of benefit to increasing the adaptability to varying light conditions.

Cytoplasmic and nuclear genome variations of rice hybrids and their parents inform the trajectory and strategy of hybrid rice breeding

The male sterility(MS)line is a prerequisite for efficient production of hybrid seeds in rice,a self-pollinating species.MS line breeding is pivotal for hybrid rice improvement.Understanding the historical breeding tra-jectory will help to improve hybrid rice breeding strategies.Maternally inherited cytoplasm is an appro-priate tool for phylogenetic reconstruction and pedigree tracing in rice hybrids.In this study,we analyzed the cytoplasmic genomes of 1495 elite hybrid rice varieties and identified five major types of cytoplasm,which correspond to different hybrid production systems.As the cytoplasm donors for hybrids,461 MS lines were also divided into five major types based on cytoplasmic and nuclear genomic architecture.Spe-cific core accessions cooperating with different fertility-associated genes drove the sequence divergence of MS lines.Dozens to hundreds of convergent and divergent selective sweeps spanning several agro-nomic trait-associated genes were identified among different types of MS lines.We further analyzed the cross patterns between different types of MS lines and their corresponding restorers.This study system-atically analyzed the cytoplasmic genomes of rice hybrids revealed their relationships with nuclear ge-nomes of MS lines,and illustrated the trajectory of hybrid rice breeding and the strategies for breeding different types of MS lines providing new insights for future improvement of hybrid rice.

Causes of Poor Grain Plumpness of Two-Line Hybrids and Their Relationships to the Contents of Hormones in the Rice Grain

This study was designed to elucidate the grain filling characteristics and the causes of poor grain plumpness of some two-line hybrid rice combinations and their hormonal mechanism. Six varieties, including three two-line hybrid rice combinations, that show differences in seed-setting and grain filling, were used. And the contents of starch, sucrose, zeatin （Z） ＋ zeatin riboside （ZR）, indole-3-acetic acid （IAA）, and abscisic acid （ABA）, the ethylene evolution rate, activities of sucrose synthase （SuSase） and starch synthase （StSase） in grains, the seed-setting and grain filling rate were investigated. The correlations amongst these were analyzed. The results showed that the poor grain filling of two-line hybrids was mainly attributed to the higher unfilled grain rate and the lower filling degree of inferior grains. During the early and mid grain filling periods, the sucrose content in inferior grains was greater than that in superior grains for the combinations with poor grain filling, indicating that the substrate concentration was not the principal factor for their slow grain filling and poor grain plumpness of the inferior grains of two-line hybrids. Z ＋ ZR, IAA, and ABA in superior grains were obviously greater than those in inferior grains at early grain filling stage. The maximum and mean contents of Z ＋ ZR, IAA, and ABA were positively very significantly correlated with the maximum and mean grain-filling rate, filling degree, and grain weight. The evolution rate of ethylene was greater in inferior grains than in superior grains and greater for the combinations with poor grain plumpness than those with good grain plumpness at the early or mid filling stages. The evolution rate of ethylene was negatively and significantly correlated with the grain filling rate, the grain filling degree, and the grain weight. Spraying ethephon （ethylene-releasing agent） at the early grain filling stage increased the evolution rate of ethylene, reduced the ABA content and activities of SuSase and StSase, and decreased the grain filling degree and the grain weight. The results were reversed when cobatous nitrate （an inhibitor of ethylene synthesis） was applied. The results suggested that the hormones and their balance play a role in the regulation of grain filling and enzymatic activities, and the poor grain filling is attributed to the low contents of Z ＋ ZR, IAA, and ABA, and the high evolution rate of ethylene in the inferior grains of some two-line hybrid rice combinations. The results suggested that hormones play important roles in the grain filling of some two-line hybrid rice combinations, and their filling degree can be improved by regulating the hormonal contents.

Resistance Evaluation of Some Chinese Leading Rice Maintainer, Restorer lines and Their Hybrids to Magnaporthe grisea

Six isolates of Magnaporthe grisea were selected to inoculate on 10 Chinese leading maintainer lines (B-lines), 14 restorer lines (R-lines) and their F1 hybrid plants. In the tested rice materials, R-lines were proved to be more resistant to blast than B-lines. The resistance frequency of about 25% F1 hybrid plants was less than their parents. In addition, 26 isolates of M. grisea collected from different rice growing areas of China were inoculated on 13 new improved hybrid rice combinations. The resistance frequencies of 5 improved hybrids were better than those of the controls and leading varieties in rice production of China.

Grain Quality and Genetic Analysis of Hybrids Derived from Different Ecological Types in Japonica Rice (Oryza sativa)

The performance and inheritance of 7 quality traits were studied using F2 rice grain derived from 8×8 diallel crossing made by employing 8 parents of different ecological japonica rice types. Differences in each trait among 8 parents were not obvious, but in F2 generation, transgressive phenomena were found in all the traits studied, indicating that the genes controlling these traits among parents were segregated. The inheritance of grain width, grain weight, chalkiness score (CS), gelatinization temperature (GT) and gel consistency (GC) were suitable to additive-dominant model, and dominant effect contributed mainly for the 5 traits. The inheritance of grain length (GL) and amylose content (AC) did not fit into additive-dominant model, existing epistatic interactions. Dominant genes for grain width and grain weight had the efficiency of decreasing effect, and dominant genes for CS, GT and GC had the efficiency of enhancing effect. Koshihikari contained more recessive genes for gelatinization temperature than other varieties. Zhendao 88 had more dominant genes in grain width and grain weight than other varieties. Xiushui 04 possessed more dominant genes for GL and GC, and more recessive genes for CS than other varieties.

Yield characteristics of japonicalindica hybrids rice in the middle and lower reaches of the Yangtze River in China

Although a lot of researches have been done on yield characteristics of japonica/indica hybrid rice,there is itte information on differences of yield characteristics between different types of hybrid.To determine common characteristics of japonical indica hybrid rice(JIHR)and identify the differences between different types of JIHR,the present study assessed yield characteristics,such as panicle trait,leaf area index(LAI),above-ground biomass accumulation,and nitrogen absorption and uilization,among three types of cultivar of JIHR.In our field experiments,three types of JIHR,e.g.,Yongyou,Chunyou and Jiayouzhongke,were divided,and each of them has two cultivars,which were used as materials,meanwhile,using conventional japonica rice(CJR)Wuyingjing 31 and Sujing 9 were as controls.The results showed that the mean yield of those JIHR was above 12 t ha^-1 in 2017 and 2018,and was 31.9 and 32.2%,respectively higher than that of CJR in the two years.Spikelet number per panicle of JIHR resulted in high yield.Higher yield of JIHR was likely contributed to greater panicle number and more spikelets per panicle.Higher yielding JIHR showed stronger tllering capacity,larger LAI and above-ground biomass accumulation from jointing to heading stages,which likely contributed to the higher number of spikelets per panicle.The long duration from heading to maturity stages allowed more nitrogen accumulation of higher yielding JIHR.

Comparison of Grain Quality Characteristics Between F_1 Hybrids and Their Parents in Indica Hybrid Rice

Sixteen widespread elite indica parents including seven CMS lines and nine restorer lines, and their 63 F_1 hybrids were chosen to compare the eleven traits of grain quality. Overall results showed that the frequency of negative over-dominance, dominance and partial dominance was much higher than that of positive ones and heterosis, indicating that the values of F_1 hybrids were generally lower than the means of their parents in quality characteristics. There existed apparent disparity in grain quality performance among F_1 hybrids varied with the traits. The characteristics of chalky area percentage, chalky grain percentage, gel consistency and head rice recovery had a great variation in all kinds of tested heterosis indices including the mid-parent heterosis index, over high-value parent heterosis index and over low-value parent heterosis index, which suggested that special attention should be paid to the selection of F_1 hybrids in these traits in breeding. The mean values of F_1 hybrids were significantly lower than those of their higher parents in all the traits but close to or significantly lower than those of their mid-parent values except for kernel length and amylose content; and significantly higher than those of their lower parents except for brown rice recovery, milled rice recovery and gel consistency.

Grain Shape Genes:Shaping the Future of Rice Breeding

The main goals of rice breeding nowadays include increasing yield,improving grain quality,and promoting complete mechanized production to save labor costs.Rice grain shape,specified by three dimensions,including grain length,width and thickness,has a more precise meaning than grain size,contributing to grain appearance quality as well as grain weight and thus yield.Furthermore,the divergence of grain shape characters could be utilized in mechanical seed sorting in hybrid rice breeding systems,which has been succeeded in utilizing heterosis to achieve substantial increase in rice yield in the past decades.Several signaling pathways that regulate rice grain shape have been elucidated,including G protein signaling,ubiquitination-related pathway,mitogen-activated protein kinase signaling,phytohormone biosynthesis and signaling,micro RNA process,and some other transcriptional regulatory pathways and regulators.This review summarized the recent progress on molecular mechanisms underlying rice grain shape determination and the potential of major genes in future breeding applications.

Developmental Analysis of Genetic Behavior of Brown Rice Width in indica-japonica Hybrids

The developmental genetic behaviors of brown rice width （BRW） have been studied in indica-japonica hybrid rice （Oryza sativa L.）, in which seven indica male sterile lines and five japonica restorer lines were applied, by using the developmental genetic models and corresponding statistical approaches for quantitative traits of triploid in cereal crops. The BRW of indica-japonica hybrid rice was co-determined by gene expression of tdploid endosperm, cytoplasm, diploid maternal plant and their genotype × environmental interaction effects. Unconditional analysis showed that the endosperm additive and matemal additive effects were predominant for the development of BRW from early- to late-stage of the grain development, but the endosperm dominant effect together with matemal effect and cytoplasmic effect became the major factor determing the BRW at the ripening stage. Moreover, conditional analysis found that there were new onset and offset of gene expression at different developmental stages of BRW in indica-japonica hybrid rice. Maternal and cytoplasm general heritabilities and their interaction heritabilities were more important compared to other components of heritability for BRW at all the five developmental stages.

Irrigating with cooler water does not reverse high temperature impact on grain yield and quality in hybrid rice

Rice grain yield and quality are negatively impacted by high temperature stress.Irrigation water temperature significantly affects rice growth and development,thus influencing yield and quality.The role of cooler irrigation water in counteracting high temperature induced damages in rice grain yield and quality are not explored.Hence,in the present study two rice hybrids,Liangyoupeijiu(LYPJ)and IIyou 602(IIY602)were exposed to heat stress and irrigated with water having different temperatures in a splitsplit plot experimental design.The stress was imposed starting from heading until maturity under field-based heat tents,over two consecutive years.The maximum day temperature inside the heat tents was set at 38℃.For the irrigation treatments,two different water sources were used including belowground water with cooler water temperature and pond water with relatively higher water temperature.Daytime mean temperatures in the heat tents were increased by 1.2–2.0℃ across two years,while nighttime temperature remained similar at both within and outside the heat tents.Cooler belowground water irrigation did have little effect on air temperature at the canopy level but decreased soil temperature(0.2–1.4℃)especially under control.Heat stress significantly reduced grain yield(33%to 43%),panicles m^(-2)(9%to 10%),spikelets m^(-2)(15%to 22%),grain-filling percentage(13%to 26%)and 1000-grain weight(3%to 5%).Heat stress significantly increased chalkiness and protein content and decreased grain length and amylose content.Grain yield was negatively related to air temperature at the canopy level and soil temperature.Whereas grain quality parameters like chalkiness recorded a significantly positive association with both air and soil temperatures.Irrigating with cooler belowground water reduced the negative effect of heat stress on grain yield by 8.8%in LYPJ,while the same effect was not seen in IIY602,indicating cultivar differences in their response to irrigation water temperature.Our findings reveal that irrigating with cooler belowground water would not significantly mitigate yield loss or improve grain quality under realistic field condition.The outcome of this study adds to the scientific knowledge in understanding the interaction between heat stress and irrigation as a mitigation tool.Irrigation water temperature regulation at the rhizosphere was unable to counteract heat stress damages in rice and hence a more integrated management and genetic options at canopy levels should be explored in the future.

Mitigating risks of hybrid rice use in terrace agriculture

The Honghe Hani Rice Terraces of Yunnan Province have become a national emblem for China and a UNESCO World Heritage Site,but some are beginning to crumble.This research attempts to address why this is happening and what can be done about it.Previous work has failed to adequately address the possible shortcomings of recently introduced seed and water management technologies,their particular effect on rice terraces and the people who depend upon them.In an effort to better understand the issue,field observation was triangulated with in-depth interviews with local people,and the examination of scientific literature.To do this,the authors spent time in China with a translator in a key village known to be first in the area to truly succeed in carving the rice terraces and in making the mountain slope irrigation system required actually working.Results validated by experts in each field indicate that while the new seed and technologies do save water and improve lives,paired with migration,they may also be threatening the long-term viability of rice terracing in the region.The authors conclude that an integrated approach is needed and put forward a strategic blueprint to reinforce ecological,social and economic longevity.They also call for more research into the applicability of these resilience measures in other hybrid rice terracing regions,such as in the Philippines and Vietnam.

Grain yield,nitrogen use efficiency and physiological performance of indica/japonica hybrid rice in response to various nitrogen rates

Utilizing the heterosis of indica/japonica hybrid rice(IJHR)is an effective way to further increase rice grain yield.Rational application of nitrogen(N)fertilizer plays a very important role in using the heterosis of IJHR to achieve its great yield potential.However,the responses of the grain yield and N utilization of IJHR to N application rates and the underlying physiological mechanism remain elusive.The purpose of this study was to clarify these issues.Three rice cultivars currently used in rice production,an IJHR cultivar Yongyou 2640(YY2640),a japonica cultivar Lianjing 7(LJ-7)and an indica cultivar Yangdao 6(YD-6),were grown in the field with six N rates(0,100,200,300,400,and 500 kg ha^(-1))in 2018 and 2019.The results showed that with the increase in N application rates,the grain yield of each test cultivar increased at first and then decreased,and the highest grain yield was at the N rate of 400 kg ha^(-1)for YY2640,with a grain yield of 13.4 t ha^(-1),and at 300 kg ha^(-1)for LJ-7 and YD-6,with grain yields of 9.4–10.6 t ha^(-1).The grain yield and N use efficiency(NUE)of YY2640 were higher than those of LJ-7 or YD-6 at the same N rate,especially at the higher N rates.When compared with LJ-7 or YD-6,YY2640 exhibited better physiological traits,including greater root oxidation activity and leaf photosynthetic rate,higher cytokinin content in the roots and leaves,and more remobilization of assimilates from the stem to the grain during grain filling.The results suggest that IJHR could attain both higher grain yield and higher NUE than inbred rice at either low or high N application rates.Improved shoot and root traits of the IJHR contribute to its higher grain yield and NUE,and a higher content of cytokinins in the IJHR plants plays a vital role in their responses to N application rates and also benefits other physiological processes.

Hyperparameter Optimization for Capsule Network Based Modified Hybrid Rice Optimization Algorithm

Hyperparameters play a vital impact in the performance of most machine learning algorithms.It is a challenge for traditional methods to con-figure hyperparameters of the capsule network to obtain high-performance manually.Some swarm intelligence or evolutionary computation algorithms have been effectively employed to seek optimal hyperparameters as a com-binatorial optimization problem.However,these algorithms are prone to get trapped in the local optimal solution as random search strategies are adopted.The inspiration for the hybrid rice optimization(HRO)algorithm is from the breeding technology of three-line hybrid rice in China,which has the advantages of easy implementation,less parameters and fast convergence.In the paper,genetic search is combined with the hybrid rice optimization algorithm(GHRO)and employed to obtain the optimal hyperparameter of the capsule network automatically,that is,a probability search technique and a hybridization strategy belong with the primary HRO.Thirteen benchmark functions are used to evaluate the performance of GHRO.Furthermore,the MNIST,Chest X-Ray(pneumonia),and Chest X-Ray(COVID-19&pneumonia)datasets are also utilized to evaluate the capsule network learnt by GHRO.The experimental results show that GHRO is an effective method for optimizing the hyperparameters of the capsule network,which is able to boost the performance of the capsule network on image classification.

Effects of Different Seed Coating Agents on the Quality of"Grey-matter"Hybrid Rice Seeds

[Objectives]This study was conducted to select suitable mixed seed coating agents for improving the quality of"grey-matter"hybrid rice seeds.[Methods]Three different mixed seed coating agents(A,B,C)were used to coat the seeds of two varieties(Taiyou 390 and Zhenliangyou 8612)of hybrid rice with different"grey-matter"content(5%,15%,25%),and the results were investigated and compared.[Results]The combinations of treatment B(seed coating agent A+Linong)and treatment C(Manshijin+seed coating agent A)could significantly improve indexes including seed germination potential,germination rate,seed vigor,seedling height,fibrous roots and fresh weight of the two varieties with a"grey-matter"content greater than 15%,but had no significant effects on main root length,dry weight,leaf number and tiller number,and the effects of treatment B was better than those of treatment C.That is to say,mixed seed coating agent B(seed coating agent A+Linong)was suitable for use as a seed coating agent to improve the quality of"grey-matter"seeds.[Conclusions]This study provides a reference plan for the safe use of mixed seed batches with"grey-matter"deterioration.

Relationship Between Grain Yield and Yield Components in Super Hybrid Rice

Chinese super hybrid rice breeding project has developed many new varieties with great yield potential. It is controversial which yield component should be emphasized in super hybrid rice production. The present study was conducted to compare super hybrid rice with common hybrid and super inbred rice and analyze contributions of yield components to grain yield of super hybrid rice under experimental conditions, and evaluate relationships between grain yield and yield components of super hybrid rice in farmer’s paddy fields. Field experiments were done in Changsha, Guidong, and Nanxian, Hunan Province, China, from 2007 to 2009. Eight super hybrid varieties, one common hybrid variety, and one super inbred variety were grown in each location and year. Rice production investigation was undertaken in high-yielding （Guidong）, moderate-yielding （Nanxian）, and low-yielding （Ningxiang） regions of Hunan Province, China, in 2009. Grain yield and yield components were measured in both the field experiments and rice production investigation. Super hybrid rice varieties outyielded common hybrid and super inbred varieties across three locations and years. Yield potential has been increased by 11.4% in super hybrid rice varieties compared with common and super inbred varieties. The higher yield of super hybrid varieties was attributed to improvement in panicle size. Panicles per m2 had the highest positive contribution to grain yield with the exception under yield level of 10.0 to 12.0 t ha-1, and was positively related to grain yield in farmer’s field at all of the high-, moderate-, and low-yielding regions. Our study suggests that panicle per m2 ought to be emphasized in super hybrid rice production.

Development of Hybrid Rice to Ensure Food Security

Rice is the staple food for more than half of the world＇s population and for more than 60% of China population. Increasing rice yield is therefore crucial for solving food shortage problem, ensuring food secruity, and reducing poverty. Given the vast population and limited per capita cultivated land in China, meeting food demands by increasing the yield per unit area with the aid of advanced sciences and technologies would be the only option. Several alternative measures for increasing crop yield, such as building water conservancy facilities, increasing fertilizer application, improving soil texture, forming interrelated cultivation techniques, more effective controlling of pests and diseases, and using of elite varieties, have been undertaken. Among these alternative measures, adopting elite varieties, particularly popularizing super hybrid rice, proves to be the most economical and effective option.