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Orf1/SpcS Chaperones ExoS for Type Three Secretion by Pseudomonas aeruginosa 被引量:1
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作者 DA-KANG SHEN LAURIANE QUENEE +5 位作者 MARIETTE BONNET LAURIANE KUHN MADIHA DEROUAZI DANIELE LAMOTTE BERTRAND TOUSSAINT BENOIT POLACK 《Biomedical and Environmental Sciences》 SCIE CAS CSCD 2008年第2期103-109,共7页
Objective Pseudomonas aeruginosa is a ubiquitous and opportunistic pathogen that uses the type Ⅲ secretion system (TTSS) to inject effector proteins directly into the cytosol of target cells to subvert the host cel... Objective Pseudomonas aeruginosa is a ubiquitous and opportunistic pathogen that uses the type Ⅲ secretion system (TTSS) to inject effector proteins directly into the cytosol of target cells to subvert the host cell's functions. Specialized bacterial chaperones are required for effective secretion of some effectors. To identify the chaperone of ExoS, the representative effector secreted by the TTSS of P aeruginosa, we analyzed the role of a postulated chaperone termed Orfl. Methods By allelic exchange, we constructed the mutant with the deletion of gene Orfl. Analysis of secreted and cell-associated fractions was performed by SDS-PAGE and Western blotting. Using strain expressing in trans Orfl, tagged by V5 polypeptide and histidine, protein-protein interaction was determined by affinity resin pull-down assay in combination with MALDI-TOF The role of Orfl in the expression of exoS was evaluated by gene reporter analysis. Results Pull-down assay showed that Orfl binds to ExoS and ExoT. Secretion profile analysis showed that Orfl was necessary for the optimal secretion of ExoS and ExoT. However, Orfl had no effect on the expression of exoS. Conclusion Orfl is important for the secretion of ExoS probably by maintaining ExoS in a secretion-competent conformation. We propose to name Orfl as SpcS for "specific Pseudomonas chaperone for ExoS". 展开更多
关键词 type secretion system Pseudomonas aeruginosa CHAPERONE
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Molecular Cloning,Bioinformatics Analysis and Expression Analysis of Type III Secretion System(T3SS)Injectisome Gene vscX from Vibrio alginolyticus
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作者 Xieyan CHEN Jing LI +4 位作者 Huanying PANG Yunsheng CHANG Yucong HUANG Zaohe WU Jichang JIAN 《Agricultural Biotechnology》 CAS 2017年第1期41-45,共5页
In order to enrich the research about type III secretion system (T3SS) injectisome of Vibrio alginolyticus, vscX gene was cloned from E algianlyticus strain HY9901 for bioinformatics analysis and expression analysis... In order to enrich the research about type III secretion system (T3SS) injectisome of Vibrio alginolyticus, vscX gene was cloned from E algianlyticus strain HY9901 for bioinformatics analysis and expression analysis. Specific primers were designed according to the full-length geanme sequence of V. alginolyticus in GenBank. vscX gene (C, enBank accession number: FR780679) contained a 378 bp open reading frame (ORF), encoding a putative protein of 125 amino acids. The theoretical molecular weight was 14.209 2 kD and theoretical pI was 5.75. By using Signal 4.1 Server and TMHMM Server 2.0, it was predicted that VscX protein had no transmembrane domain or signal peptide. The results of prediction using SoftBerry-Psite software showed that VscX protein contained three casein ki- nase lI phosphorylation sites, one N-myristoylation site and three C-terminal targeting signal sites. Subcellular localization revealed that VscX might be located in cytoplasm with the possibility of 56.5%. According to SMART prediction, VscX had one Pfam ( 1 - 125 aa) domain. Phylogenetic analysis revealed that VscX from V. alginolyticus and VscX from E parahemolyticus were clustered into the same group. Network interaction analysis showed that vscX was adjacent to vseY, vopB and sycN. By real-time fluorescent quantitative PCR technique and 2-△△△ method, the differences in expression levels of VscX mRNA in V. alginolyticus strain HY9901, T3SS deletion strain AvscO and complementary strain C-vscO at different growth stages were analyzed. The results showed that the expression levels of VscX mRNA in V. algianlyticus strain HY9901 and C-vscO were significantly up-regulated at stable growth stage ( P 〈0.01 ) ; the expression levels of VscX mRNA in deletion strain △vscO were significantly up-regulated at late growth stage ( P 〈0.01 ). This study provided the basis for revealing the transport mechanism of T3SS injectisome of E alginolyticus. 展开更多
关键词 Vibrio alginolyticus vscX type III secretion system 13 SS)
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T4SP: A Novel Tool and Database for Type IV Secretion Systems in Bacterial Genomes
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作者 ZHANG Wen YU Wei Wen +5 位作者 LIU Di LI Ming DU Peng Cheng WU Yi Lei George F. GAO CHEN Chen 《Biomedical and Environmental Sciences》 SCIE CAS CSCD 2013年第7期614-617,共4页
Secretion systems, macromolecules to pass which can mediate the across cellular membranes, are essential for virulent and genetic material exchange among bacterial species[1]. Type IV secretion system (T4SS) is one ... Secretion systems, macromolecules to pass which can mediate the across cellular membranes, are essential for virulent and genetic material exchange among bacterial species[1]. Type IV secretion system (T4SS) is one of the secretion systems and it usually consists of 12 genes: VirB1, VirB2 ...VirB11, and VirD4[2]. The structure and molecular mechanisms of these genes have been well analyzed in Gram-negative strains[3] and Gram-positive strains were once believed to be lack of T4SS. However, some recent studies revealed that one or more virB/D genes also exist in some kinds of Gram-positive bacteria and play similar role, and form a T4SS-like system[3]. The VirBl-like, VirB4, VirB6, and VirD4 genes were identified in the chromosome of Gram-positive bacterium Streptococcus suis in our previous studies and their role as important mobile elements for horizontal transfer to recipients in an 89 K pathogenicity island (PAl) was demonstrated[45]. However, their structure and molecular mechanisms in other strains, especially in Gram-positive strains, are remained unclear. 展开更多
关键词 T4SP A Novel Tool and Database for type IV secretion Systems in Bacterial Genomes
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Molecular investigation of exoU and exoY virulence genes in Pseudomonas aeruginosa collected from hospitalized patients in North of Iran:A descriptive-analytical study
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作者 Ahmad Reza Moradi Mehrdad Gholami +2 位作者 Lotfollah Davoodi Negar Hajilou Hamid Reza Goli 《Journal of Acute Disease》 2024年第2期74-80,共7页
Objective:To investigate the frequency of exoU and exoY genes in patients with Pseudomonas aeruginosa infection.Methods:In this study,100 clinical isolates of Pseudomonas aeruginosa were collected from patients hospit... Objective:To investigate the frequency of exoU and exoY genes in patients with Pseudomonas aeruginosa infection.Methods:In this study,100 clinical isolates of Pseudomonas aeruginosa were collected from patients hospitalized in educational-therapeutic hospitals and were identified using standard microbiological tests.Then,the antibiotic resistance pattern of the isolates was determined by the disk agar diffusion method.The bacterial DNAs were extracted by the alkaline lysis method.Finally,the presence of exoU and exoY genes was evaluated by the PCR test.Results:In this study,47%,72%,29%,39%,40%,and 44%of the isolates were non-susceptible to piperacillin,aztreonam,ceftazidime,imipenem,tobramycin,and ciprofloxacin,respectively.In addition,95%and 93%of the clinical isolates carried the exoU and exoY genes.Blood and fecal isolates had both virulence genes,while only one wound isolate had neither genes.Meanwhile,all urinary isolates contained the exoY gene and only one isolate lacked the exoU gene.Also,88 isolates simultaneously had both exoU and exoY genes.Conclusions:High prevalence of exoU and exoY genes in this region indicates a significant role of typeⅢsecretion system in pathogenesis of Pseudomonas aeruginosa.The typeⅢsecretion system may be a suitable target to reduce the pathogenicity of this bacterium. 展开更多
关键词 Pseudomonas aeruginosa exoU exoY Virulence gene typesecretion system PCR
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Mogroside IIE,an in vivo metabolite of sweet agent,alleviates acute lung injury via Pla2g2a-EGFR inhibition
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作者 Weichao Lü Guoqing Ren +2 位作者 Kuniyoshi Shimizu Renshi Li Chaofeng Zhang 《Food Science and Human Wellness》 SCIE CSCD 2024年第1期299-312,共14页
In the face of increasingly serious environmental pollution,the health of human lung tissues is also facing serious threats.Mogroside IIE(M2E)is the main metabolite of sweetening agents mogrosides from the anti-tussiv... In the face of increasingly serious environmental pollution,the health of human lung tissues is also facing serious threats.Mogroside IIE(M2E)is the main metabolite of sweetening agents mogrosides from the anti-tussive Chinese herbal Siraitia grosvenori.The study elucidated the anti-inflammatory action and molecular mechanism of M2E against acute lung injury(ALI).A lipopolysaccharide(LPS)-induced ALI model was established in mice and MH-S cells were employed to explore the protective mechanism of M2E through the western blotting,co-immunoprecipitation,and quantitative real time-PCR analysis.The results indicated that M2E alleviated LPS-induced lung injury through restraining the activation of secreted phospholipase A2 type IIA(Pla2g2a)-epidermal growth factor receptor(EGFR).The interaction of Pla2g2a and EGFR was identified by co-immunoprecipitation.In addition,M2E protected ALI induced with LPS against inflammatory and damage which were significantly dependent upon the downregulation of AKT and m TOR via the inhibition of Pla2g2a-EGFR.Pla2g2a may represent a potential target for M2E in the improvement of LPS-induced lung injury,which may represent a promising strategy to treat ALI. 展开更多
关键词 Mogroside IIE Acute lung injury Secreted phospholipase A2 type IIA(Pla2g2a) Epidermal growth factor receptor(EGFR)
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SecReT6 update:a comprehensive resource of bacterial TypeⅥSecretion Systems 被引量:2
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作者 Jianfeng Zhang Jiahao Guan +7 位作者 Meng Wang Gang Li Marko Djordjevic Cui Tai Hui Wang Zixin Deng Zhaoyan Chen Hong-Yu Ou 《Science China(Life Sciences)》 SCIE CAS CSCD 2023年第3期626-634,共9页
TypeⅥSecretion System(T6SS)plays significant roles in microbial activities via injecting effectors into adjacent cells or environments.T6SS increasingly gained attention due to its important influence on pathogenesis... TypeⅥSecretion System(T6SS)plays significant roles in microbial activities via injecting effectors into adjacent cells or environments.T6SS increasingly gained attention due to its important influence on pathogenesis,microbial competition,etc.T6SS-associated research is explosively expanding on numerous grounds that call for an efficient resource.The SecReT6 version3 provides comprehensive information on T6SS and the interactions between T6SS and T6SS-related proteins such as T6SS regulators and T6SS effectors.To assist T6SS researches like microbial competition and regulatory mechanisms,SecReT6 v3developed online tools for detection and analysis of T6SS and T6SS-related proteins and estimation of T6SS-dependent killing risk.We have identified a novel T6SS regulator and T6SS-dependent killing capacity in Acinetobacter baumannii clinical isolates with the aid of SecReT6 v3.17,212 T6SSs and plentiful T6SS-related proteins in 26,573 bacterial complete genomes were also detected,analyzed and incorporated into the database.The database is freely available at https://bioinfo-mml.sjtu.edu.cn/SecReT6/. 展开更多
关键词 typesecretion System T6SS-related protein DATABASE prediction Acinetobacter baumannii
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Type Ⅳ secretion system in Helicobacter pylori:a new insight into pathogenicity 被引量:9
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作者 ZHONG Qiao SHAO Shi-he +3 位作者 CUI Lei-lei MU Run-hong JU Xiao-li DONG Su-rong 《Chinese Medical Journal》 SCIE CAS CSCD 2007年第23期2138-2142,共5页
Objective To review the research progress on Type Ⅳ secretion system (T4SS) in HelicobacterpylorL Data sources The data used in this review were identified by searching of PUBMED (1995-2007) online resources usin... Objective To review the research progress on Type Ⅳ secretion system (T4SS) in HelicobacterpylorL Data sources The data used in this review were identified by searching of PUBMED (1995-2007) online resources using the key terms 'Type Ⅳ secretion system' and 'Helicobacter pylon. Study selection Mainly original articles and critical reviews written by major pioneer investigators of this field were selected. Results The research progress on T4SS in Helicobacter pylori was summarized. The structure and function was discussed. Conclusions T4SS is not only involved in toxin secretion and injection of virulence factors into eukaryotic host target cells, but also involved in horizontal DNA transfer to other bacteria and eukaryotic cells, through DNA uptake from or release into the extracellular milieu. It provides a new insight into the pathogenicity of Helicobacter pylori and a novel target for antimicrobials development. However, many challenges remain for us in understanding the biological role of T4SS in Helicobacter pylori. 展开更多
关键词 Helicobacter pylori type secretion system natural transformation
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Towards a better understanding of antimicrobial resistance dissemination:what can be learnt from studying model conjugative plasmids? 被引量:2
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作者 Zhen Shen Christoph M.Tang Guang-Yu Liu 《Military Medical Research》 SCIE CAS CSCD 2022年第5期592-602,共11页
Bacteria can evolve rapidly by acquiring new traits such as virulence,metabolic properties,and most importantly,antimicrobial resistance,through horizontal gene transfer(HGT).Multidrug resistance in bacteria,especiall... Bacteria can evolve rapidly by acquiring new traits such as virulence,metabolic properties,and most importantly,antimicrobial resistance,through horizontal gene transfer(HGT).Multidrug resistance in bacteria,especially in Gram-negative organisms,has become a global public health threat often through the spread of mobile genetic elements.Conjugation represents a major form of HGT and involves the transfer of DNA from a donor bacterium to a recipient by direct contact.Conjugative plasmids,a major vehicle for the dissemination of antimicrobial resistance,are selfish elements capable of mediating their own transmission through conjugation.To spread to and survive in a new bacterial host,conjugative plasmids have evolved mechanisms to circumvent both host defense systems and compete with co-resident plasmids.Such mechanisms have mostly been studied in model plasmids such as the F plasmid,rather than in conjugative plasmids that confer antimicrobial resistance(AMR)in important human pathogens.A better understanding of these mechanisms is crucial for predicting the flow of antimicrobial resistance-conferring conjugative plasmids among bacterial populations and guiding the rational design of strategies to halt the spread of antimicrobial resistance.Here,we review mechanisms employed by conjugative plasmids that promote their transmission and establishment in Gram-negative bacteria,by following the life cycle of conjugative plasmids. 展开更多
关键词 Horizontal gene transfer Antimicrobial resistance Conjugative plasmids type IV secretion system Restriction-modification systems SOS response Entry exclusion Fertility inhibition
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Molecular Cloning,Bioinformatics Analysis and Transcriptional Expression of Virulence-related Gene(exsA)of Vibrio alginolyticus 被引量:2
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作者 Weijie ZHANG Liangchuan CHEN +4 位作者 Lin LIN Shihui ZHOU Zihao HE Yanqiu LIANG Huanying PANG 《Asian Agricultural Research》 2021年第1期38-42,共5页
[Objectives]The purpose was to investigate the function and mechanism of exsA gene in type III secretion system of Vibrio alginolyticus.[Methods]The full length of exsA was cloned using molecular biology techniques to... [Objectives]The purpose was to investigate the function and mechanism of exsA gene in type III secretion system of Vibrio alginolyticus.[Methods]The full length of exsA was cloned using molecular biology techniques to analyze its biological information.Fluorescence quantitative PCR technology was used to analyze the expression of exsA after different media stress.[Results]The exsA gene contains an open reading frame(ORF)of 861 bp,encoding 286 amino acids.The physico-chemical analysis shows that the molecular structural formula is C1442H2267N393O441S12,the theoretical molecular weight is 32.549 kD,the theoretical pI value is 6.0,and the protein is non-hydrophilic and unstable.The gene does not contain a transmembrane region,and there is no obvious signal peptide.The prediction result of protein subcellular localization shows that the protein is inside the cell.The deduced amino acid sequence and constructed phylogenetic tree show that V.alginolyticus has a close relationship with Vibrio antiquarius.The qPCR results show that the expression level of exsA in different media is different,highest in TSB medium containing bile salts,followed by DMEM medium,and lowest in ordinary TSB medium.[Conclusions]The gene sequence,molecular structure and isoelectric point of exsA,as well as its expression in three different media were obtained. 展开更多
关键词 Vibrio alginolyticus exsA type III secretion system Bioinformatics analysis
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Beyond dueling: roles of the type VI secretion system in microbiome modulation, pathogenesis and stress resistance 被引量:1
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作者 Jinshui Lin Lei Xu +2 位作者 Jianshe Yang Zhuo Wang Xihui Shen 《Stress Biology》 CAS 2021年第1期132-143,共12页
Bacteria inhabit diverse and dynamic environments,where nutrients may be limited and toxic chemicals can be prevalent.To adapt to these stressful conditions,bacteria have evolved specialized protein secretion systems,... Bacteria inhabit diverse and dynamic environments,where nutrients may be limited and toxic chemicals can be prevalent.To adapt to these stressful conditions,bacteria have evolved specialized protein secretion systems,such as the type VI secretion system(T6SS)to facilitate their survival.As a molecular syringe,the T6SS expels various effectors into neighboring bacterial cells,eukaryotic cells,or the extracellular environment.These effectors improve the competitive fitness and environmental adaption of bacterial cells.Although primarily recognized as antibacterial weapons,recent studies have demonstrated that T6SSs have functions beyond interspecies competition.Here,we summarize recent research on the role of T6SSs in microbiome modulation,pathogenesis,and stress resistance. 展开更多
关键词 type VI secretion system COMPETITION MICROBIOME PATHOGENESIS Stress resistance BIOFILM
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Molecular Cloning and Bioinformatics Analysis of T3SS Effector HopPmaJ from Vibrio alginolyticus 被引量:1
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作者 Jingmin ZHAO Mingsheng QIU +4 位作者 Huanying PANG Dawei SONG Yunsheng CHANG Yang HUANG Jichang JIAN 《Agricultural Biotechnology》 CAS 2017年第4期43-47,共5页
In this paper, the hopPmaJ gene, which encodes type III effector HopPmaJ of Vibrio alginolyticus, was cloned, sequenced and bioinformatically predicted. The results showed that hopPmaJ (GenBank accession number: KX2... In this paper, the hopPmaJ gene, which encodes type III effector HopPmaJ of Vibrio alginolyticus, was cloned, sequenced and bioinformatically predicted. The results showed that hopPmaJ (GenBank accession number: KX245315) is 345 bp in length and encodes 114 amino acids, with a theoretical molecular mass of 12. 774 kD, and a pI of 4.45. The protein has multiple functional domains and binding sites, but no signal peptide. The tertiary structure of the protein is a homodimer. Based on multiple parameters, the possible dominant B cell antigenic epitopes of HopPmaJ were predicted to be at positions 13 - 16, 29 -30, 40 -42, 45 -49 and 84 -91. 展开更多
关键词 Vibrio alginolyticus HopPmaj type III secretion system
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Diverse interactions of five core type Ⅲ effectors from Ralstonia solanacearum with plants 被引量:1
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作者 Shen Cong Jun-Zhou Li +1 位作者 Zheng-Zhong Xiong Hai-Lei Wei 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2023年第5期341-352,共12页
Ralstonia solanacearum is a widespread plant bacterial pathogen that can launch a range of type Ⅲ effectors(T3Es)to cause disease.In this study,we isolate a pathogenic R.solanacearum strain named P380 from tomato rhi... Ralstonia solanacearum is a widespread plant bacterial pathogen that can launch a range of type Ⅲ effectors(T3Es)to cause disease.In this study,we isolate a pathogenic R.solanacearum strain named P380 from tomato rhizosphere.Five out of 12 core T3Es of strain P380 are introduced into Pseudomonas syringae DC3000D36E separately to determine their functions in interacting with plants.DC3000D36E that harbors each effector suppresses FliC-triggered Pti5 and ACRE31 expression,ROS burst,and callose deposition.RipAE,RipU,and RipW elicit cell death as well as upregulate the MAPK cascades in Nicotiana benthamiana.The derivatives RipC1^(△DDXDX(T/V))and RipW^(△DDKXXQ)but not RipAE^(K310R) fail to suppress ROS burst.Moreover,RipAE^(K310R) and RipW^(△DDKXXQ) retain the cell death elicitation ability.RipAE and RipW are associated with salicylic acid and jasmonic acid pathways,respectively.RipAE and RipAQ significantly promote the propagation of DC3000D36E in plants.The five core T3Es localize in diverse subcellular organelles of nucleus,plasma membrane,endoplasmic reticulum,and Golgi network.The suppressor of G2 allele of Skp1 is required for RipAE but not RipU-triggered cell death in N.benthamiana.These results indicate that the core T3Es in R.solanacearum play diverse roles in plantpathogen interactions. 展开更多
关键词 Ralstonia solanacearum typesecretion system EFFECTORS PTI ETI
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The putative propeptide of MycP1 in mycobacterial type VII secretion system does not inhibit protease activity but improves protein stability
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作者 Demeng Sun Qing Liu +4 位作者 Yao He Chengliang Wang Fangming Wu Changlin Tian Jianye Zang 《Protein & Cell》 SCIE CSCD 2013年第12期921-931,共11页
Mycosin-1 protease(MycP1)is a serine protease anchored to the inner membrane of Mycobacterium tuberculosis,and is essential in virulence factor secretion through the ESX-1 type VII secretion system(T7SS).Bacterial phy... Mycosin-1 protease(MycP1)is a serine protease anchored to the inner membrane of Mycobacterium tuberculosis,and is essential in virulence factor secretion through the ESX-1 type VII secretion system(T7SS).Bacterial physiology studies demonstrated that MycP1 plays a dual role in the regulation of ESX-1 secretion and virulence,primarily through cleavage of its secretion substrate EspB.MycP1 contains a putative N-terminal inhibitory propeptide and a catalytic triad of Asp-His-Ser,classic hallmarks of a sub-tilase family serine protease.The MycP1 propeptide was previously reported to be initially inactive and activated after prolonged incubation.In this study,we have deter-mined crystal structures of MycP1 with(MycP124-422)and without(MycP1^(63-422))the propeptide,and conducted EspB cleavage assays using the two proteins.Very high struc-tural similarity was observed in the two crystal structures.Interestingly,protease assays demonstrated positive EspB cleavage for both proteins,indicating that the putative propeptide does not inhibit protease activity.Molecu-lar dynamic simulations showed higher rigidity in regions guarding the entrance to the catalytic site in MycP124-422 than in MycP1^(63-422),suggesting that the putative propeptide might contribute to the conformational stability of the active site cleft and surrounding regions. 展开更多
关键词 type VII ESX-1 secretion system serine protease PROPEPTIDE crystal structure EspB cleavage molecular dynamic simulations
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Chemical constituents and theiranti-infective activity of Paeonia suffruticosa
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作者 Yang Wu Si-Yun Liu +1 位作者 Chun-Hua Lu Yue-Mao Shen 《TMR Integrative Medicine》 2022年第25期1-5,共5页
Objective:Research the chemical constituents of Paeonia suffruticosa that are responsible for its anti-infective properties.Methods:Several column chromatographic methods were used to purify the chemical constituents ... Objective:Research the chemical constituents of Paeonia suffruticosa that are responsible for its anti-infective properties.Methods:Several column chromatographic methods were used to purify the chemical constituents from P.suffruticosa,including medium pressure liquid chromatography,Sephadex LH-20,and normal silica gel.A disc diffusion method was used to screen for antibacterial activity,and their anti-virulence activity was assessed on the type III secretion system(T3SS)of Salmonella pathogenicity island 1(SPI-1)in Salmonella enterica serovar Typhimurium UK-1 g 8956 by SDS-PAGE and western blots.Results:Twenty-one compounds were identified.Compounds 7,8 and 17 showed moderate activity against S.aureus ATCC25923,compounds 8,9 and 10 showed weak activities against B.subtilis ACCC11060.Meanwhile,phenols(14-18)and flavonoids(20 and 21)inhibited T3SS protein secretion of S.typhimurium without affecting bacterial growth.Furthermore,a strong inhibitory effect was observed for 17 and 20 on SPI-1 mediated invasion of HeLa cells.Additionally,no toxicity was observed for these compounds.Conclusion:P.suffruticosa has anti-infective properties due in part to the fact that phenols and flavonoids can block the secretion of T3SS-associated protein effectors. 展开更多
关键词 Paeonia suffruticosa anti-infective activity type III secretion system phenols and flavonoids
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A Fur-regulated type Ⅵ secretion system contributes to oxidative stress resistance and virulence in Yersinia pseudotuberculosis
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作者 Yuxin Zuo Changfu Li +7 位作者 Danyang Yu Kenan Wang Yuqi Liu Zhiyan Wei Yantao Yang Yao Wang Xihui Shen Lingfang Zhu 《Stress Biology》 2023年第1期20-34,共15页
The type Ⅵ secretion system(T6SS)is a widespread protein secretion apparatus deployed by many Gram-negative bacterial species to interact with competitor bacteria,host organisms,and the environment.Yersinia pseudotub... The type Ⅵ secretion system(T6SS)is a widespread protein secretion apparatus deployed by many Gram-negative bacterial species to interact with competitor bacteria,host organisms,and the environment.Yersinia pseudotuber-culosis T6SS4 was recently reported to be involved in manganese acquisition;however,the underlying regulatory mechanism still remains unclear.In this study,we discovered that T6SS4 is regulated by ferric uptake regulator(Fur)in response to manganese ions(Mn^(2+)),and this negative regulation of Fur was proceeded by specifically recogniz-ing the promoter region of T6SS4 in Y.pseudotuberculosis.Furthermore,T6SS4 is induced by low Mn^(2+)and oxidative stress conditions via Fur,acting as a Mn^(2+)-responsive transcriptional regulator to maintain intracellular manganese homeostasis,which plays important role in the transport of Mn^(2+)for survival under oxidative stress.Our results pro-vide evidence that T6SS4 can enhance the oxidative stress resistance and virulence for Y.pseudotuberculosis.This study provides new insights into the regulation of T6SS4 via the Mn^(2+)-dependent transcriptional regulator Fur,and expands our knowledge of the regulatory mechanisms and functions of T6SS from Y.pseudotuberculosis. 展开更多
关键词 typesecretion system Fur Manganese Oxidative stress Virulence
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WEDeepT3: predicting type Ⅲ secreted effectors based on word embedding and deep learning
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作者 Xiaofeng Fu Yang Yang 《Quantitative Biology》 CAS CSCD 2019年第4期293-301,共9页
Background:The type Ⅲ secreted effectors(T3SEs)are one of the indispensable proteins in the growth and reproduction of Gram-negative bacteria.In particular,the pathogenesis of Gram-negative bacteria depends on the ty... Background:The type Ⅲ secreted effectors(T3SEs)are one of the indispensable proteins in the growth and reproduction of Gram-negative bacteria.In particular,the pathogenesis of Gram-negative bacteria depends on the type Ⅲ secreted effectors,and by injecting T3SEs into a host cell,the host cell's immunity can be destroyed.The high diversity of T3SE sequences and the lack of defined secretion signals make it difficult to identify and predict.Moreover,the related study of the pathological system associated with T3SE remains a hot topic in bioinformatics.Some computational tools have been developed to meet the growing demand for the recognition of T3SEs and the studies of type Ⅲ secretion systems(T3SS).Although these tools can help biological experiments in certain procedures,there is still room for improvement,even for the current best model,as the existing methods adopt handdesigned feature and traditional machine learning methods.Methods:In this study,we propose a powerful predictor based on deep learning methods,called WEDeepT3.Our work consists mainly of three key steps.First,we train word embedding vectors for protein sequences in a large-scale amino acid sequence database.Second,we combine the word vectors with traditional features extracted from protein sequences,like PSSM,to construct a more comprehensive feature representation.Finally,we construct a deep neural network model in the prediction of type Ⅲ secreted effectors.Results:The feature representation of WEDeepT3 consists of both word embedding and position-specific features.Working together with convolutional neural networks,the new model achieves superior performance to the state-ofthe-art methods,demonstrating the effectiveness of the new feature representation and the powerful learning ability of deep models.Conclusion:WEDeepT3 exploits both semantic information of Ar-mer fragments and evolutional information of protein sequences to accurately difYerentiate between T3SEs and non-T3SEs.WEDeepT3 is available at bcmi.sjtu.edu.cn/~yangyang/WEDeepT3.html. 展开更多
关键词 typeⅢsecreted effectors word2vector PSSM feature representation
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Emergence of hypervirulent Pseudomonas aeruginosa pathotypically armed with co-expressed T3SS effectors ExoS and ExoU 被引量:1
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作者 Yuqin Song Yongqi Mu +11 位作者 Nai-Kei Wong Zhuo Yue Juan Li Min Yuan Xiong Zhu Jinshu Hu Gang Zhang Dawei Wei Chao Wang Weihui Wu Fang Bai Jie Feng 《hLife》 2023年第1期44-56,共13页
Pseudomonas aeruginosa is a significant pathogen mainly causing healthcare-associated infections(HAIs).Newly emerging high-risk clones of P.aeruginosa with elevated virulence profiles furtherly cause severe community-... Pseudomonas aeruginosa is a significant pathogen mainly causing healthcare-associated infections(HAIs).Newly emerging high-risk clones of P.aeruginosa with elevated virulence profiles furtherly cause severe community-acquired infections(CAIs).Usually,it is not common for P.aeruginosa to co-carry exoU and exoS genes,encoding two type III secretion system(T3SS)effectors.The pathogenicity mechanism of exoS+/exoU+strains of P.aeruginosa remains unclear.Here,we provide detailed evidence for a subset of hypervirulent P.aeruginosa strains,which abundantly co-express and secrete the T3SS effectors ExoS and ExoU.The exoS+/exoU+P.aeruginosa strains were available to cause both HAIs and CAIs.The CAI-associated strains could elicit severe inflammation and hemorrhage,leading to higher death rates in a murine acute pneumonia model,and had great virulence potential in establishing chronic infections,demonstrating hypervirulence when compared to PAO1(exoS+/exoU-)and PA14(exoS-/exoU+).Both ExoS and ExoU were co-expressed and co-secreted in abundance in exoS+/exoU+strains.Their abundant protein secretion could boost exoS+/exoU+strains’potentials for cytotoxicity in vitro and pathogenicity in vivo.Genomic evidence indicates that exoU acquisition is likely mediated by horizontal gene transfer(HGT)of the pathogenicity island PAPI-2,while deletion of exoU was sufficient to mitigate virulence in the exoS+/exoU+strains.Furthermore,bioinformatics analysis showed that such exoS+/exoU+P.aeruginosa strains turned out to be widely distributed across the globe.Overall,the research provide detailed evidence for the high virulence and epidemicity of exoS+/exoU+strains of P.aeruginosa,highlighting an urgent need for surveillance against these high-risk hypervirulent strains. 展开更多
关键词 Hypervirulent Pseudomonas aeruginosa community-acquired infection type III secretion system(T3SS) co-expressed ExoS and ExoU pathogen surveillance
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A plasma membrane nucleotide-binding leucinerich repeat receptor mediates the recognition of the Ralstonia pseudosolanacearum effector RipY in Nicotiana benthamiana
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作者 Boyoung Kim Wenjia Yu +6 位作者 Haseong Kim Qian Dong Sera Choi Maxim Prokchorchick Alberto PMacho Kee Hoon Sohn Cécile Segonzac 《Plant Communications》 SCIE CSCD 2023年第6期313-328,共16页
Bacterial wilt disease caused by several Ralstonia species is one of the most destructive diseases in Solanaceae crops.Only a few functional resistance genes against bacterial wilt have been cloned to date.Here,we sho... Bacterial wilt disease caused by several Ralstonia species is one of the most destructive diseases in Solanaceae crops.Only a few functional resistance genes against bacterial wilt have been cloned to date.Here,we showthat the broadly conserved typeⅢsecreted effector RipY is recognized by the Nicotiana benthamiana immune system,leading to cell death induction,induction of defense-related gene expression,and restriction of bacterial pathogen growth.Using a multiplexed virus-induced gene-silencing-based N.benthamiana nucleotide-binding and leucine-rich repeat receptor(NbNLR)library,we identified a coiled-coil(CC)nucleotide-binding and leucine-rich repeat receptor(CNL)required for recognition of RipY,which we named RESISTANCE TO RALSTONIA SOLANACEARUM RIPY(RRS-Y).Genetic complementation assays in RRS-Y-silenced plants and stable rrs-y knockout mutants demonstrated that RRS-Y is sufficient to activate RipY-induced cell death andRipY-induced immunity to Ralstonia pseudosolanacearum.RRS-Y function is dependent on the phosphate-binding loop motif of the nucleotide-binding domain but independent of the characterized signaling components ENHANCED DISEASE SUSCEPTIBILITY 1,ACTIVATED DISEASE RESISTANCE 1,and N REQUIREMENT GENE 1 and the NLR helpers NB-LRR REQUIRED FOR HR-ASSOCIATED CELL DEATH-2,-3,and-4 in N.benthamiana.We further show that RRS-Y localization at the plasma membrane is mediated by two cysteine residues in the CC domain and is required for RipY recognition.RRSY also broadly recognizes RipY homologs across Ralstonia species.Lastly,we show that the C-terminal region of RipY is indispensable for RRS-Y activation.Together,our findings provide an additional effector/receptor pair system to deepen our understanding of CNL activation in plants. 展开更多
关键词 typeⅢsecreted effector plant immune system nucleotide-binding leucine-rich repeat receptor virusinduced gene silencing
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Sensing bacterial infections by NAIP receptors in NLRC4 inflammasome activation 被引量:6
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作者 Yi-Nan Gong Feng Shao 《Protein & Cell》 SCIE CSCD 2012年第2期98-105,共8页
The inflammasome is an emerging new pathway in innate immune defense against microbial infection or endogenous danger signals.The inflammasome stimulates activation of inflammatory caspases,mainly caspase-1.Caspase-1 ... The inflammasome is an emerging new pathway in innate immune defense against microbial infection or endogenous danger signals.The inflammasome stimulates activation of inflammatory caspases,mainly caspase-1.Caspase-1 activation is responsible for processing and secretion of IL-1βand IL-18 as well as for inducing macrophage pyroptotic death.Assembly of the large cytoplasmic inflammasome complex is thought to be mediated by members of NOD-like receptor(NLR)family.While functions of most of the NLR proteins remain to be defined,several NLR proteins including NLRC4 have been shown to assemble distinct inflammasome complexes.These inflammasome pathways,particularly the NLRC4 inflammasome,play a critical role in sensing and restricting diverse types of bacterial infections.Here we review recent advances in defining the exact bacterial ligands and the ligand-binding receptors involved in NLRC4 inflammasome activation.Implications of the discovery of the NAIP family of inflammasome receptors for bacterial flagellin and type III secretion apparatus on future inflammasome and bacterial infection studies are also discussed. 展开更多
关键词 INFLAMMASOME NOD-like receptors NLRC4 CASPASE-1 NAIP type III secretion system FLAGELLIN SALMONELLA LEGIONELLA enteropathogenic E.coli BURKHOLDERIA
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Legionella pneumophila temporally regulates the activity of ADP/ATP translocases by reversible ADP-ribosylation 被引量:2
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作者 Jiaqi Fu Pengwei Li +4 位作者 Hongxin Guan Dan Huang Lei Song Songying Ouyang Zhao-Qing Luo 《mLife》 2022年第1期51-65,共15页
The mitochondrion is an important signaling hub that governs diverse cellular functions,including metabolism,energy production,and immunity.Among the hundreds of effectors translocated into host cells by the Dot/Icm s... The mitochondrion is an important signaling hub that governs diverse cellular functions,including metabolism,energy production,and immunity.Among the hundreds of effectors translocated into host cells by the Dot/Icm system of Legionella pneumophila,several are targeted to mitochondria but the function of most of them remains elusive.Our recent study found that the effector Ceg3 inhibits the activity of ADP/ATP translocases(ANTs)by ADP-ribosylation(ADPR).Here,we show that the effect of Ceg3 is antagonized by Larg1,an effector encoded by lpg0081,a gene that is situated next to ceg3.Larg1 functions to reverse Ceg3-mediated ADPR of ANTs by cleaving the N-glycosidic bond between the ADPR moiety and the modified arginine residues in ANTs,leading to restoration of their activity in ADP/ATP exchange.Structural analysis of Larg1 and its complex with ADPR reveals that this ADPR glycohydrolase harbors a unique macrodomain that catalyzes the removal of ADPR modification on ANTs.Our results also demonstrate that together with Ceg3,Larg1 imposes temporal regulation of the activity of ANTs by reversible ADPR during L.pneumophila infection. 展开更多
关键词 energy metabolism metaeffector MITOCHONDRIA type IV secretion
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