大豆油中转基因成分的Nested PCR和Semi-nested PCR检测方法研究

对大豆油中DNA提取方法进行了研究,结果表明CTAB、SDS和Wizard试剂盒提取大豆油DNA均具有良好的效果。利用nested PCR和semi-nested PCR检测大豆(Roundup Ready)油中的转基因成分发现,该方法能够检测到大豆原油中的Lectin基因(112bp)、CaMV35S基因(147bP)和CP4-EPSPS基因(205bp),检测灵敏度达到10-6ng/μl;但该方法未能从人豆成品油(一级)中扩增到上述基因,当中的转基因成分DNA含量低于10-12ng/μl。

半巢式RT-Realtime PCR检测马铃薯Y病毒脉坏死株系

马铃薯Y病毒脉坏死株系(Potato virusY,PVYn)是马铃薯中一个非常重要的病毒病害。本文根据PVYn基因组中RNA依赖的RNA聚合酶基因序列保守区域,设计合成了3条巢式PCR引物和1条TaqMAN荧光探针,建立了半巢式RT-Realtime PCR检测PVYn的新方法。该方法采用E.Z.N.ATM快速提取植物总RNA,并有机地结合了巢式PCR和TaqMAN探针检测技术。第二步半巢式RT-Realtime PCR既是对第一步信号的进一步放大,也是对第一步PCR产物的确认,因此,检测的准确性、灵敏度比巢式PCR、Real time PCR等方法高。实验结果表明,该方法检测灵敏度可达4fg/μL植物总RNA。

Study on the Molecular Variation and PCR Detection of Strawberry mottle virus

Strawberry mottle virus （SMoV） is an important viral pathogen infecting strawberry （Fragaria spp.）. The study was conducted to analyze the characterization of the molecular variation of SMoV and develop the methods for detection of SMoV by nested PCR and transcriptional enhancement techniques. The 3 non-coding region （NCR） and large coat protein （LCP） gene of SMoV genome were amplified by reverse transcription-polymerase chain reaction （RT-PCR）. The specific segments were cloned and sequenced. The characterization of the molecular variation for some isolates of SMoV and phylogenetic analysis were studied. Based on the primers located in the conserved region of genome of SMoV, SMoV could be steadily detected using semi-nested PCR and transcriptional enhancement techniques. Both semi-nested PCR and transcriptional enhancement techniques were considerably more sensitive than the standard RT-PCR. The nucleotide sequences of NCR and partial LCP gene of Chinese isolates were obtained, and sequence analysis of the partial LCP gene of various SMoV isolates showed nucleotide identities ranging from 76.8 to 99.7%. There was a slight tendency for isolates to group according to their geographical origin. All 3 Polish isolates, 4 isolates of 7 Dutch isolates, and 3 isolates of 4 Chinese isolates formed a small separate branch, respectively. Two Germanic isolates had a far relationship with other isolates, and formed a separate clade. A high level of sequence variability was found among SMoV isolates, and the Germanic isolates were likely to a special strain group.

双引物探针RT-Realtime PCR检测马铃薯A病毒

马铃薯A病毒(Potato virus A,PVA)是我国重要的检疫性有害生物。本研究根据PVA中CP基因(coat protein gene)的保守序列,设计了两套PCR引物和TaqMan探针,建立了双引物探针RT-RealtimePCR检测PVA的方法。该方法采用实时荧光PCR技术,有效地提高了检测的灵敏度;同时两套引物探针相互验证,有效提高了结果的准确性。实验结果表明,本方法准确、灵敏、简便、快速,检出低限可达0.5fg/μL植物总RNA。