Growth inhibition induced by short hairpin RNA to silence survivin gene in human pancreatic cancer cells

BACKGROUND: Survivin is known to be overexpressed in various human malignancies, including pancreatic cancer, and mediates cancer cell proliferation and tumor growth, so the regulation of this molecule could be a new strategy for treating pancreatic cancer. In this study, short hairpin RNAs (shRNAs) specific to survivin were introduced into human pancreatic cancer Patu8988 cells to investigate the inhibitory effects on survivin expression and cell proliferation in vitro and in vivo. METHODS: Three kinds of shRNA specific to the survivin gene were designed and cloned into eukaryotic expression plasmid pGenesil-1 vector. Subsequently the recombinant plasmids were transfected into human pancreatic cancer Patu8988 cells with lipfectamine (TM) 2000 reagent. The mRNA and protein expressions of survivin in the transiently transfected Patu8988 cells were determined by RT-PCR, flow cytometry, and Western blotting analysis. The proliferation inhibition rates of stably transfected Patu8988 cells were determined by MTT assay. The antitumor activities of the three kinds of survivin-shRNA plasmids were evaluated in BALB/c nude mice inoculated with Patu8988 cells and bearing human pancreatic cancer. RESULTS: The three survivin-shRNA plasmids named pGenesil-1-survivin-1, pGenesil-1-survivin-2 and pGenesil-1-survivin-1+2 (with double interfering RNA sites) were successfully constructed, and were confirmed by restriction enzyme cutting and sequencing. At 48 hours after transfection, the expression of survivin mRNA and protein was inhibited in Patu8988 cells transfected with pGenesil-1-survivin-1, pGenesil-1-survivin-2, and pGenesil-1-survivin-1+2 when compared with that of either pGenesil-1-NC (with scrambled small interfering RNA) transfected cells or control cells (P<0.05). The MTT results showed that the proliferation rates of Patu8988 cells stably transfected with survivin-shRNA plasmids were reduced when compared with that of either pGenesil-1-NC transfected cells or control cells (P<0.01). Furthermore, when Patu8988 cells stably transfected with survivin-shRNA were injected into BALB/c nude mice, tumor growth was dramatically lower and the tumor was smaller than that of either pGenesil-1-NC transfected cells or control cells (P<0.01). The inhibitory effect of pGenesil-1-survivin-1 was the best among the three kinds of survivin-shRNA plasmids, but no combination of inhibitory effects was found in pGenesil-1-survivin-1+2. CONCLUSIONS: shRNAs specific to survivin have gene silencing effects and inhibit pancreatic cancer cell proliferation. shRNA activity against survivin could be of potential value in gene therapy for pancreatic cancer. However, shRNAs with double combining sites did not significantly enhance the interference compared with single site shRNAs, therefore further studies on this are needed.

Influence of Osteopontin Short Hairpin RNA on the Proliferation and Activity of Rat Vascular Smooth Muscle Cells

To investigate the influence of osteopontin （OPN） short hairpin RNA （shRNA） on the proliferation and activity of rat vascular smooth muscle cells （VSMCs）, the expressing vector of shRNA targeting OPN was constructed and transferred into the rat VSMCs. After amplification and purification, pGenesil-1/OPNshRNA1 （PG1）, pGenesil-1/OPNshRNA2 （PG2） and pGenesil-1/OPNshRNAHK （PGH） were transfected into the cultured rat VSMC by LipofectamineTM 2000. Transfected cells were visualized by using an inverted fluorescent microscope. VSMCs transfected by optimal recombined plasmid was selected by culturing in G418 48 h later. Nude cells and cells transfected by PGH were used as control. The expression levels of OPN mRNA and protein were assayed by RT-PCR and Western blotting. The OPN of VSMCs was suppressed by transfection of optimal recombined plasmid, and the changes in cell proliferation, adhesion and motility were evaluated by MTT, adhesion test and transwell chamber test. Levels of type I and Ⅲ collagen were measured with ELISA kit. Our results showed that VSMCs stably transfected by OPN shRNA accounted for over 50% of total cells. OPN mRNA and protein were reduced by 81% and 67% （P〈0.01） by PG1, 73% and 52% （P〈0.01） by PG2, respectively while no change was found in PGH and non-treated VSMCs. PG1 significantly suppressed the proliferation, adhesion, mobility of VSMCs and reduced the amount of type Ⅰ and Ⅲ collagen. It is concluded that recombinant plasmid can be success-fully transfected into VSMCs by LipofectamineTM 2000 and inhibit the expression of OPN. The proliferation, adhesion and mobility of VSMCs can be inhibited by knocking down OPN expression. Moreover, the transferring capability of cells is attenuated, and the secretion of type Ⅰ and Ⅲ collagen is inhibited aftter knocking-down of OPN expression. The study provides experimental evidence for clinical prevention of restenosis after percutaneous coronary intervention （PCI） by RNA interference （RNAi） technology.

Short Hairpin RNA-mediated MDR1 Gene Silencing Increases Apoptosis of Human Ovarian Cancer Cell Line A2780/Taxol

Objective： Recurrent ovarian cancer is often resistant to drugs such as paclitaxel. Short hairpin RNA （shRNA） targeting MDRI, a gene involved in the process of drug resistance, may be a promising strategy to overcome drug resistance. Methods： Construction and identification of eukaryotic expression plasmid was transiently transfected into human ovarian cancer ce plasmid of shRNA targeting on MDR1 gene. The ne A2780/Taxol. Apoptosis was determined by flow cytometry using annexin V-FITC/PI double labeling. Expression of MDRI mRNA was detected by quantitative polymerase chain reaction （qPCR） and P-glycoprotein expression was detected using Western blot. Results The IC50 of paclitaxel in MDR1 shRNA-transfected group was significantly reduced （1.986±0.153）μmol/ml as compared with that in negative control （5.246±0.107）μmol/ml and empty vector-transfected group （5.212±0.075）μmol/ml （P〈0.05）. The percent of the relative reverse sensitivity to paclitaxel on A2780/Taxol cells was 67.1%, and the apoptotic rate was significantly increased [（6.977±0.333）%] compared with control [（1.637±0.111）%] and empty vector-transfected group [（1.663±0.114）%] （P〈0.05）. Expressions of MDR1 mRNA and P-glycoprotein were significantly reduced compared with control （P〈0.05）. Conclusion： The present study demonstrated that the eukaryotic expression plasmid of shRNA targeting on MDRI inhibited the expression of MDRI effectively, thus enhance the sensitivity of A2780/Taxol cells to paclitaxel.

Influence of Osteopontin Short Hairpin RNA on the Proliferation and Invasion of Human Renal Cancer Cells

The influence of short hairpin RNA(shRNA)-mediated osteopontin(OPN)gene silencing on the proliferation and invasion of human renal cancer ACHN cells was investigated.Four types of OPN shRNA recombinant plasmids were constructed and RT-PCR assays were used to screen the most highly functional shRNA recombinant plasmids,which were transferred into the cultured ACHN cells by LipofectamineTM 2000.The cells transfected by shRNA expression vectors(ACHN/OPN)were visualized under an inverted microscope and screened...

Lentivirus-mediated short hairpin RNA interference of CENPK inhibits growth of colorectal cancer cells with overexpression of Cullin 4A

BACKGROUND Colorectal cancer(CRC)is one of the most common malignant tumors worldwide.The identification of novel diagnostic and prognostic biomarkers for CRC is a key research imperative.Immunohistochemical analysis has revealed high expression of centromere protein K(CENPK)in CRC.However,the role of CENPK in the progression of CRC is not well characterized.AIM To evaluate the effects of knockdown of CENPK and overexpression of Cullin 4A(CUL4A)in RKO and HCT116 cells.METHODS Human colon cancer samples were collected and tested using a human gene expression chip.We identified CENPK as a potential oncogene for CRC based on bioinformatics analysis.In vitro experiments verified the function of this gene.We investigated the expression of CENPK in RKO and HCT116 cells using quantitative polymerase chain reaction(qPCR),western blot,and flow cytometry.The effect of short hairpin RNA(shRNA)virus-infected RKO cells on tumor growth was evaluated in vivo using quantitative analysis of fluorescence imaging.To evaluate the effects of knockdown of CENPK and overexpression of CUL4A in RKO and HCT116 cells,we performed a series of in vitro experiments,using qPCR,western blot,MTT assay,and flow cytometry.RESULTS We demonstrated overexpression of CENPK in human colon cancer samples.CENPK was an independent risk factor in patients with CRC.The downstream genes FBX32,CUL4A,and Yesassociated protein isoform 1 were examined to evaluate the regulatory action of CENPK in RKO cells.Significantly delayed xenograft tumor emergence,slower growth rate,and lower final tumor weight and volume were observed in the CENPK short hairpin RNA virus infected group compared with the CENPK negative control group.The CENPK gene interference inhibited the proliferation of RKO cells in vitro and in vivo.The lentivirus-mediated shRNA interference of CENPK inhibited the proliferation of RKO and HCT116 colon cancer cells,with overexpression of the CUL4A.CONCLUSION We indicated a potential role of CENPK in promoting tumor proliferation,and it may be a novel diagnostic and prognostic biomarker for CRC.

Construction of Short Hairpin RNA Vector with σNS & σC Genes of Avian Reovirus and Determination of Interference Effect

[ Objective] The aim was to explore novel method for treatment of Avian Reovirus. [ Method] According to the design principle of siRNA target sequences, siRNA templates were designed and synthesized and then cloned into the shRNA expression vector, namely, pSilencer-CMV 4.1 neo. Short hairpin RNA vector C1, C2, C3, which contain σC gene, and shRNA vector NS1, NS2, NS3, which contain aNS gene, were constructed separately. The constructed shRNA vectors and negative control were co-transfected into DF-1 cells with the eukaryotic expression vector pEG- FP-σC and pEGFP-σNS, respectively. [ Result] Observation through fluorescence microscope indicated that the constructed 6 shRNA could inhibit the expression of fusion protein to different degrees. In addition, results of Real-time PCR suggested that C3 and NS1 have the best interference effect to the viral duplication in vitro. [ Conclusionl Construction and selection of specific shRNA expression vectors inhibiting Avian Reovirus are significant for researching effects of σC and oNS proteins in infection and duplication of ARV, providing new idea for ARV antiviral therapy.

Short hairpin RNA-mediated knockdown of nuclear factor erythroid 2-like 3 exhibits tumor-suppressing effects in hepatocellular carcinoma cells

BACKGROUND Hepatocellular carcinoma(HCC) is one of the most common malignant tumors with high mortality-to-incidence ratios. Nuclear factor erythroid 2-like 3(NFE2 L3), also known as NRF3, is a member of the cap ‘n' collar basic-region leucine zipper family of transcription factors. NFE2 L3 is involved in the regulation of various biological processes, whereas its role in HCC has not been elucidated.AIM To explore the expression and biological function of NFE2 L3 in HCC.METHODS We analyzed the expression of NFE2 L3 in HCC tissues and its correlation with clinicopathological parameters based on The Cancer Genome Atlas(TCGA) data portal. Short hairpin RNA(shRNA) interference technology was utilized to knock down NFE2 L3 in vitro. Cell apoptosis, clone formation, proliferation, migration,and invasion assays were used to identify the biological effects of NFE2 L3 in BEL-7404 and SMMC-7721 cells. The expression of epithelial-mesenchymal transition(EMT) markers was examined by Western blot analysis.RESULTS TCGA analysis showed that NFE2 L3 expression was significantly positively correlated with tumor grade, T stage, and pathologic stage. The qPCR and Western blot results showed that both the mRNA and protein levels of NFE2 L3 were significantly decreased after shRNA-mediated knockdown in BEL-7404 and SMMC-7721 cells. The shRNA-mediated knockdown of NFE2 L3 could induce apoptosis and inhibit the clone formation and cell proliferation of SMMC-7721 and BEL-7404 cells. NFE2 L3 knockdown also significantly suppressed the migration, invasion, and EMT of the two cell lines.CONCLUSION Our study showed that shRNA-mediated knockdown of NFE2 L3 exhibited tumor-suppressing effects in HCC cells.

Complement factor B knockdown by short hairpin RNA inhibits laser-induced choroidal neovascularization in rats

AIM:To evaluate whether recombinant complement factor B(CFB)short hairpin RNA(sh RNA)reduces laserinduced choroidal neovascularization(CNV)in rats.METHODS:Laser-induced rat CNV model was established,and then the animals underwent fundus fluorescence angiography(FFA)and hematoxylin and eosin(HE)staining.On day 3 and 7 after photocoagulation,the expression of CFB and membrane attack complex(MAC)was detected by immunhischemistry.A recombinant CFBsh RNA plasmid was constructed.CFB and scrambled sh RNA plasmids were intravenous injected into rats via the tail vein on the day of laser treatment,respectively.On day 7,the incidence of CNV was determined by FFA,and the expression of CFB and vascular endothelial growth factor(VEGF)in retinal pigment epithelium(RPE)/choroidal tissues was detected by immunhischemistry,Western blot and/or semi-quantitative reverse transcription-polymerase chain reaction(RT-PCR)in CFB and scrambled sh RNA groups.The possible adverse effects of CFB-sh RNA injection were assessed by transmission electron microscopy and electroretinography.RESULTS:FFA and HE results indicated that a laserinduced rat CNV model was successfully established on day 7 after photocoagulation.The expression of CFB and MAC was extremely weak in normal retina and choroid,and increased on day 3 after photocoagulation.However,it started to reduce on day 7.CFB sh RNA plasmid was successfully constructed and induced CFB knockdown in the retinal and choroidal tissues.FFA showed CFB knockdown significantly inhibited incidence of CNV in rats.Moreover,CFB knockdown significantly inhibited the expression of VEGF in RPE/choroidal tissues.CFB sh RNA caused no obvious side effects in eyes.CONCLUSION:CFB knockdown significantly inhibits the formation and development of CNV in vivo through reducing the expression of VEGF,which is a potential therapy target.The alternative pathway of complement activation plays an important role in CNV formation.

Suppression of Replication of Rabies Virus by Short Hairpin RNAs Expressed by Plasmid

Targeting the N gene of rabies virus (RV), four shRNA expression plasmids were designed and constructed based on the vector pRNATU6.3-Hygro that expresses fusion protein with GFP as a reporter gene. Four cell strains (N1, N2, N3, N4) expressing the short hairpin RNAs (shRNA) were obtained after the plasmids were transfected into BHK-21 cells and screened under the pressure of Hygromycin B (300 μg/mL). These cell strains were infected with 100× the TCID 50 of rabies virus CVS-11 strain, and the viral replication was quantified at 24, 48, 72 and 96 hours by directed immunofluorescence assay (DFA), real-time PCR, and the 50% tissue culture infective dose (TCID 50 ). The results showed variable inhibition of viral replication, with BHK-N2 being the most effective strain (99% inhibition). There was close correspondence between results using the three methods of evaluation. The shRNA-mediated inhibition persisted to at least 96 hours after infection. Effective inhibition of replication of RV in BHK-21 cells was achieved by siRNA targeting the N gene, with N 2 , aimed at the region starting at position 701 of the gene, being the most potent.

Apoptosis induced by short hairpin RNA-mediated STAT6 gene silencing in human colon cancer cells

Background The relationship between signal transduction and tumors has become one of the loci in cancer research. Signal transducer and activator of the transcription 6 （STAT6） signaling pathway is found to be activated in some cancer cells. But the function of the pathway in cancer cells is unknown. This study was undertaken to investigate the effect of the Stat6 signaling pathway on apoptosis in human colon cancer cells （HT-29 cells） and the possible mechanism of Stat6 by RNA interference techniques.

Reversal of multidrug resistance in renal cell carcinoma by short hairpin RNA targeting MDR1 gene

Background Over-expression of P-glycoprotein （P-gp）, encoded by the MDR1 gene, confers multidrug resistance （MDR） in renal cell carcinoma （RCC） and is a major reason for unsuccessful chemotherapy. This study aimed to determine the effct of RNA interference （RNAi） on the reversal of MDR in human RCC. Methods We designed and selected one short hairpin RNA （shRNA） targeting MDR1 gene, which is stably expressed from integrated plasmid and transfected by lentivirus fluid in human RCC A498 cell. Results The MDRl-targeted RNAi resulted in decreased MDR1 gene mRNA level （P 〈0.001）, almost abolished P-gp expression and reversed MDR to different chemotherapy drugs in the RCC A498 cell line. Conclusion MDR could be reversed by RNAi in human RCC A498 cell line, which may be used for clinical application

EIF4A3 shRNA慢病毒载体的构建及其稳定转染细胞系的建立

目的:构建真核细胞翻译起始因子4A3(EIF4A3)-短发夹RNA(shRNA)慢病毒载体,建立Neuro-2a-EIF4A3-shRNA稳定转染细胞系。方法:通过美国国家生物技术信息中心(NCBI)数据库检索EIF4A3基因序列,设计并合成PCR鉴定引物,并将其连接至经EcoRⅠ和AgeⅠ酶切的慢病毒GV493载体,构建GV493-EIF4A3-shRNA慢病毒质粒,PCR筛选阳性克隆并测序鉴定。将GV493空载质粒和GV493-EIF4A3-shRNA重组质粒分别转染至HEK293T细胞中,分别为GV493对照慢病毒和GV493-EIF4A3-shRNA慢病毒,转染48 h后收集慢病毒进行包装并测定病毒滴度。将Neuro-2a细胞分为空白组、GV493对照组和GV493-EIF4A3 shRNA组,空白组不作处理,GV493对照组和GV493-EIF4A3 shRNA组分别采用相应慢病毒感染Neuro-2a细胞,慢病毒感染复数(MOI)为100,使用10 mg·L-1嘌呤霉素筛选成功感染慢病毒的Neuro-2a细胞,荧光显微镜观察各组Neuro-2a细胞的生长状态和绿色荧光表达情况;实时荧光定量PCR(RT-qPCR)法和Western blotting法检测各组Neuro-2a细胞中EIF4A3 mRNA及蛋白表达水平。结果:PCR测序结果显示GV493-EIF4A3-shRNA重组质粒基因序列与设计合成的EIF4A3-shRNA序列一致,成功构建GV493-EIF4A3慢病毒载体。荧光显微镜观察可见HEK293T细胞荧光表达强烈,生长状态良好,慢病毒包装成功。GV493-对照慢病毒和GV493-EIF4A3-shRNA慢病毒的滴度均为2×10~8 TU·mL^(-1),GV493对照组和GV493-EIF4A3 shRNA组Neuro-2a细胞生长状态良好且表达绿色荧光,表明慢病毒感染稳定细胞系构建成功。RT-qPCR法,与空白组和GV493对照组比较,GV493-EIF4A3shRNA组Neuro-2a细胞EIF4A3mRNA表达水平明显降低(P<0.01)。Western blotting法,各组在相对分子质量49000处出现特异性条带,提示Neuro-2a细胞中EIF4A3蛋白表达成功;与空白组和GV493对照组比较,GV493-EIF4A3 shRNA组Neuro-2a细胞中EIF4A3蛋白表达水平明显降低(P<0.01)。结论:成功构建GV493-EIF4A3-shRNA慢病毒载体,建立了Neuro-2a-EIF4A3-shRNA稳定转染细胞系,为EIF4A3在颅内动脉粥样硬化的作用机制研究提供了参考。

蛋白质中较频繁发生的β发夹结构（β—Hairpins）模式──蛋白质超二级结构（MOTIF）研究（Ⅲ）

分析了２４０个分辨率在２．５Ａ以上的高精度蛋白结构，研究了α螺旋和β折叠的连接短肽中的β发夹结构模式。首先对较频繁发生的超二级结构组中的Ｅ—ｌｏｏｐ—Ｅ［１］（即β回折结构－βＴｕｒｎ）进行了分析，对每一种β回折结构的氢键长度进行了计算，然后将其模型化。在对β发夹模型化的分析中，同时考虑了连接短肽的长度和氢键模式两个因素。找出了在２４０个蛋白样本库中较常发生的β发夹结构的模式。该结果对结构比较模型、Ｘ衍射晶体结构的解析，以及β发夹结构的预测有一定意义。

Characteristics of short double stranded RNA against hepatitis C virus: a literature-based analysis

Objective: To describe the characteristics of short interfering double stranded RNA (dsRNA) against hepatitis C virus (HCV) and to find out the determining factors in design for desirable inhibitory efficacy. Methods: The data were collected and analyzed by retrieval of 229 published short dsRNAs designed for degradation of HCV RNA. Results: Statistical analyses showed that the most frequently involved short dsRNAs were directing against 5′NTR/core and genotype 1b, accounting for 64.2% and 69.9%, respectively. Inhibitory efficacy varied with the structural characteristics of short dsRNAs, of which the most potential were those directed against HCV core region with inhibitory efficacy of 70.2%. Moreover, the mean inhibitory efficacy of short dsRNAs with GC contents from 30% to 52% was higher than that of those with GC contents out of this range. Conclusion: Based on this pooled data in a relatively large sample, the present results provided clues to design for short dsRNAs with more potent inhibitory efficacy.

Knockdown of polypyrimidine tract binding protein facilitates motor function recovery after spinal cord injury

After spinal cord injury(SCI),a fibroblast-and microglia-mediated fibrotic scar is formed in the lesion core,and a glial scar is formed around the fibrotic scar as a res ult of the activation and proliferation of astrocytes.Simultaneously,a large number of neuro ns are lost in the injured area.Regulating the dense glial scar and re plenishing neurons in the injured area are essential for SCI repair.Polypyrimidine tra ct binding protein(PTB),known as an RNA-binding protein,plays a key role in neurogenesis.Here,we utilized short hairpin RNAs(shRNAs)and antisense oligonucleotides(ASOs)to knock down PTB expression.We found that reactive spinal astrocytes from mice were directly reprogrammed into motoneuron-like cells by PTB downregulation in vitro.In a mouse model of compressioninduced SCI,adeno-associated viral shRNA-mediated PTB knockdown replenished motoneuron-like cells around the injured area.Basso Mouse Scale scores and forced swim,inclined plate,cold allodynia,and hot plate tests showed that PTB knockdown promoted motor function recovery in mice but did not improve sensory perception after SCI.Furthermore,ASO-mediated PTB knockdown improved motor function resto ration by not only replenishing motoneuron-like cells around the injured area but also by modestly reducing the density of the glial scar without disrupting its overall structure.Together,these findings suggest that PTB knockdown may be a promising therapeutic strategy to promote motor function recovery during spinal cord repair.

体外靶向TP53BP2基因shRNA慢病毒载体的构建及功能鉴定

目的 本研究旨在构建靶向肿瘤蛋白p53结合蛋白2(TP53BP2)基因的短发夹RNA(shRNA)慢病毒载体,以抑制肝癌细胞TP53BP2的表达。方法 设计了2对针对TP53BP2基因的RNA干扰序列,并合成相应的shRNA序列。shRNA退火形成双链oligo序列后,应用基因重组技术构建重组质粒,经菌落PCR和测序鉴定,将重组正确的质粒进行慢病毒包装和滴度测定,并采用Western Blot、qRT-PCR和激光共聚焦技术观察慢病毒Lenti-shTP53BP2对HepG2细胞TP53BP2基因的干扰效果。结果 测序比对结果显示,各重组慢病毒载体与设计参考序列一致,提示各重组慢病毒体构建成功;重组慢病毒载体经慢病毒包装后,显示pHS-ASR-LW429、pHS-ASR-LW512和pHS-ASR-LW513的滴度分别为9.7×108TU/mL、6.1×108TU/mL和6.4×108TU/mL;用慢病毒Lenti-shTP53BP2(pHS-ASR-LW512和pHS-ASR-LW513)感染HepG2细胞后,与对照慢病毒(pHS-ASR-LW429)比,经Western Blot、qRT-PCR和激光共聚焦结果显示两个Lenti-shTP53BP2均能显著下调HepG2细胞TP53BP2基因水平和蛋白表达量。结论 本研究成功构建了靶向TP53BP2基因shRNA慢病毒载体,其能有效下调HepG2细胞TP53BP2的表达,为进一步研究TP53BP2在肝癌发生发展过程中的机制研究奠定了基础。

靶向RelA(p65)基因shRNA慢病毒载体构建及功能鉴定

目的构建靶向RelA(p65)基因的短发夹RNA(short hairpin RNA,shRNA)慢病毒载体,并对其功能进行验证。方法设计3对针对RelA基因的RNA干扰序列,并合成相应的shRNA序列。shRNA退火形成双链oligo序列后应用基因重组技术构建重组质粒,经菌落聚合酶链式反应(PCR)及测序鉴定,将重组正确的质粒进行慢病毒包装和滴度测定,通过Western blot实验筛选出对HepG2细胞株中RelA基因干扰效果最好的慢病毒,并通过CCK-8检测Lenti-shRelA对细胞增殖活性的影响。结果测序结果显示重组慢病毒载体与设计参考序列一致,提示重组慢病毒载体构建成功。重组慢病毒Y4056、Y21318、Y21319、Y21320的滴度分别为3.13×10^(8)TU/ml、2.97×10^(8)TU/ml、2.51×10^(8)TU/ml、3.40×10^(8)TU/ml。用慢病毒Lenti-shRelA(Y21318、Y21319、Y21320、Y4056)感染HepG2细胞,Western blot实验结果显示Y21320对HepG2细胞株中RelA基因的干扰效果最好。CCK-8实验结果显示RelA的敲降可显著抑制细胞增殖活力。结论该研究成功构建了靶向RelA基因shRNA慢病毒载体,其能有效下调HepG2细胞RelA的表达并抑制细胞增殖,为进一步研究RelA在肝癌发生、发展中的机制奠定了基础。

ShRNA-LDH纳米颗粒的制备及薇甘菊生物防治

核糖核酸干扰(ribonucleic acid interference,RNAi)技术在植物保护中具有高效、安全和环保的特点.外源喷施短发夹RNA(short hairpin RNA,shRNA)可以有效沉默薇甘菊(Mikania micrantha)叶绿素a/叶绿素b结合蛋白相关基因.为提高喷施shRNA对薇甘菊的防治效果,制备直径为10~100 nm的层状双氢氧化物(layered double hydroxide,LDH)黏土纳米片为shRNA的载体,该载体具有良好的生物相容性,具环境友好.研究发现,LDH结合shRNA的最佳质量比为1∶10.shRNA喷施实验表明,有轻微创伤的薇甘菊叶片对shRNA更敏感,并且LDH直接喷施对薇甘菊的生长几乎没有任何影响.为比较LDH-shRNA和单独的shRNA对薇甘菊的控制效果,利用分别搭载了6个shRNA的LDH纳米颗粒或单独的shRNA喷施薇甘菊叶片,在喷施6 d后观察到叶片喷施LDH-shRNA有更加明显的坏死表型.研发的基于LDH的shRNA携带系统可显著提高RNAi在防控薇甘菊中的有效性.

缩短 shRNA 的 3′尾与靶标 mRNA 的配对降低脱靶效应

基于对microRNA和短发夹RNA(shRNA)的3′尾功能的理解,提出了一种仅通过缩短shRNA的3′尾与靶标序列的互补长度来降低脱靶效应的方法。此方法可以在不损伤shRNA基因沉默效率的前提下达到降低shRNA脱靶效应的目的,从而有效提高shRNA的基因沉默特异性。此策略不受反义链3′区域序列的限制,可以显著改进RNA干扰设计的规则,一定程度上简化shRNA药物设计中的序列限制,拓宽其作为治疗和诊断工具在医疗中的用途和前景。

小鼠shRNA-Slfn3重组腺病毒载体的构建及其在EPCs中转染效率的测定

目的构建小鼠短发夹RNA(shRNA)-Schlafen3(Slfn3)重组腺病毒载体,并检测其在内皮祖细胞(EPCs)中的转染效率。方法采用GenBank基因软件查询小鼠Slfn3基因序列,设计并合成3个siRNA片段及其引物,取腺病毒干扰载体pADV-U6-shRNA-CMV-EGFP,采用限制性内切酶进行酶切,线性化后连接siRNA片段,获得重组腺病毒载体shRNA-Slfn3,从中筛选阳性克隆抽提质粒,进行DNA测序验证;取对数生长期的人胚胎肾细胞HEK293,采用Admax系统将目的质粒转染至HEK293细胞,获得重组腺病毒shRNA-Slfn3后进行小量扩增及病毒滴度测定;取小鼠脾脏单个核细胞体外培养至对数期EPCs,用前述所得重组腺病毒shRNA-Slfn3对其进行转染48 h,采用绿色荧光蛋白量检测重组腺病毒的转染效率。结果测序验证3组目的质粒构建成功;获得shRNA-Slfn3重组腺病毒,病毒滴度分别为2.37×10^(13)pfu/L、3.16×10^(13)pfu/L及4.74×10^(13)pfu/L;EPCs转染效率为(63.64±2.58)%。结论成功构建了小鼠shRNA-Slfn3重组腺病毒载体,转染小鼠脾源EPCs后的转染效率较高。