A novel method for clustering cellular data to improve classification

Many fields,such as neuroscience,are experiencing the vast prolife ration of cellular data,underscoring the need fo r organizing and interpreting large datasets.A popular approach partitions data into manageable subsets via hierarchical clustering,but objective methods to determine the appropriate classification granularity are missing.We recently introduced a technique to systematically identify when to stop subdividing clusters based on the fundamental principle that cells must differ more between than within clusters.Here we present the corresponding protocol to classify cellular datasets by combining datadriven unsupervised hierarchical clustering with statistical testing.These general-purpose functions are applicable to any cellular dataset that can be organized as two-dimensional matrices of numerical values,including molecula r,physiological,and anatomical datasets.We demonstrate the protocol using cellular data from the Janelia MouseLight project to chara cterize morphological aspects of neurons.

Multi-Step Clustering of Smart Meters Time Series:Application to Demand Flexibility Characterization of SME Customers

Customer segmentation according to load-shape profiles using smart meter data is an increasingly important application to vital the planning and operation of energy systems and to enable citizens’participation in the energy transition.This study proposes an innovative multi-step clustering procedure to segment customers based on load-shape patterns at the daily and intra-daily time horizons.Smart meter data is split between daily and hourly normalized time series to assess monthly,weekly,daily,and hourly seasonality patterns separately.The dimensionality reduction implicit in the splitting allows a direct approach to clustering raw daily energy time series data.The intraday clustering procedure sequentially identifies representative hourly day-unit profiles for each customer and the entire population.For the first time,a step function approach is applied to reduce time series dimensionality.Customer attributes embedded in surveys are employed to build external clustering validation metrics using Cramer’s V correlation factors and to identify statistically significant determinants of load-shape in energy usage.In addition,a time series features engineering approach is used to extract 16 relevant demand flexibility indicators that characterize customers and corresponding clusters along four different axes:available Energy(E),Temporal patterns(T),Consistency(C),and Variability(V).The methodology is implemented on a real-world electricity consumption dataset of 325 Small and Medium-sized Enterprise(SME)customers,identifying 4 daily and 6 hourly easy-to-interpret,well-defined clusters.The application of the methodology includes selecting key parameters via grid search and a thorough comparison of clustering distances and methods to ensure the robustness of the results.Further research can test the scalability of the methodology to larger datasets from various customer segments(households and large commercial)and locations with different weather and socioeconomic conditions.

基于Blending-Clustering集成学习的大坝变形预测模型

【目的】变形是反映大坝结构性态最直观的效应量,构建科学合理的变形预测模型是保障大坝安全健康运行的重要手段。针对传统大坝变形预测模型预测精度低、误报率高等问题导致的错误报警现象,【方法】选取不同预测模型和聚类算法集成,构建了一种Blending-Clustering集成学习的大坝变形预测模型,该模型以Blending对单一预测模型集成提升预测精度为核心,并通过Clustering聚类优选预测值改善模型稳定性。以新疆某面板堆石坝变形监测数据为实例分析,通过多模型预测性能比较,对所提出模型的预测精度和稳定性进行全面评估。【结果】结果显示:Blending-Clustering模型将预测模型和聚类算法集成,均方根误差(RMSE)和归一化平均百分比误差(nMAPE)明显降低,模型的预测精度得到显著提高;回归相关系数(R~2)得到提升,模型具备更强的拟合能力;在面板堆石坝上22个测点变形数据集上的预测评价指标波动范围更小,模型的泛化性和稳定性得到有效增强。【结论】结果表明:Blending-Clustering集成预测模型对于预测精度、泛化性和稳定性均有明显提升,在实际工程具有一定的应用价值。

Unknown Application Layer Protocol Recognition Method Based on Deep Clustering

In recent years,many unknown protocols are constantly emerging,and they bring severe challenges to network security and network management.Existing unknown protocol recognition methods suffer from weak feature extraction ability,and they cannot mine the discriminating features of the protocol data thoroughly.To address the issue,we propose an unknown application layer protocol recognition method based on deep clustering.Deep clustering which consists of the deep neural network and the clustering algorithm can automatically extract the features of the input and cluster the data based on the extracted features.Compared with the traditional clustering methods,deep clustering boasts of higher clustering accuracy.The proposed method utilizes network-in-network(NIN),channel attention,spatial attention and Bidirectional Long Short-term memory(BLSTM)to construct an autoencoder to extract the spatial-temporal features of the protocol data,and utilizes the unsupervised clustering algorithm to recognize the unknown protocols based on the features.The method firstly extracts the application layer protocol data from the network traffic and transforms the data into one-dimensional matrix.Secondly,the autoencoder is pretrained,and the protocol data is compressed into low dimensional latent space by the autoencoder and the initial clustering is performed with K-Means.Finally,the clustering loss is calculated and the classification model is optimized according to the clustering loss.The classification results can be obtained when the classification model is optimal.Compared with the existing unknown protocol recognition methods,the proposed method utilizes deep clustering to cluster the unknown protocols,and it can mine the key features of the protocol data and recognize the unknown protocols accurately.Experimental results show that the proposed method can effectively recognize the unknown protocols,and its performance is better than other methods.

Deep Learning and Tensor-Based Multiple Clustering Approaches for Cyber-Physical-Social Applications

The study delves into the expanding role of network platforms in our daily lives, encompassing various mediums like blogs, forums, online chats, and prominent social media platforms such as Facebook, Twitter, and Instagram. While these platforms offer avenues for self-expression and community support, they concurrently harbor negative impacts, fostering antisocial behaviors like phishing, impersonation, hate speech, cyberbullying, cyberstalking, cyberterrorism, fake news propagation, spamming, and fraud. Notably, individuals also leverage these platforms to connect with authorities and seek aid during disasters. The overarching objective of this research is to address the dual nature of network platforms by proposing innovative methodologies aimed at enhancing their positive aspects and mitigating their negative repercussions. To achieve this, the study introduces a weight learning method grounded in multi-linear attribute ranking. This approach serves to evaluate the significance of attribute combinations across all feature spaces. Additionally, a novel clustering method based on tensors is proposed to elevate the quality of clustering while effectively distinguishing selected features. The methodology incorporates a weighted average similarity matrix and optionally integrates weighted Euclidean distance, contributing to a more nuanced understanding of attribute importance. The analysis of the proposed methods yields significant findings. The weight learning method proves instrumental in discerning the importance of attribute combinations, shedding light on key aspects within feature spaces. Simultaneously, the clustering method based on tensors exhibits improved efficacy in enhancing clustering quality and feature distinction. This not only advances our understanding of attribute importance but also paves the way for more nuanced data analysis methodologies. In conclusion, this research underscores the pivotal role of network platforms in contemporary society, emphasizing their potential for both positive contributions and adverse consequences. The proposed methodologies offer novel approaches to address these dualities, providing a foundation for future research and practical applications. Ultimately, this study contributes to the ongoing discourse on optimizing the utility of network platforms while minimizing their negative impacts.

Hierarchical clustering based on single-pass for breaking topic detection and tracking

Single-pass is commonly used in topic detection and tracking( TDT) due to its simplicity,high efficiency and low cost. When dealing with large-scale data,time cost will increase sharply and clustering performance will be affected greatly. Aiming at this problem,hierarchical clustering algorithm based on single-pass is proposed,which is inspired by hierarchical and concurrent ideas to divide clustering process into three stages. News reports are classified into different categories firstly.Then there are twice single-pass clustering processes in the same category,and one agglomerative clustering among different categories. In addition,for semantic similarity in news reports,topic model is improved based on named entities. Experimental results show that the proposed method can effectively accelerate the process as well as improve the performance.

A Shared Natural Neighbors Based-Hierarchical Clustering Algorithm for Discovering Arbitrary-Shaped Clusters

In clustering algorithms,the selection of neighbors significantly affects the quality of the final clustering results.While various neighbor relationships exist,such as K-nearest neighbors,natural neighbors,and shared neighbors,most neighbor relationships can only handle single structural relationships,and the identification accuracy is low for datasets with multiple structures.In life,people’s first instinct for complex things is to divide them into multiple parts to complete.Partitioning the dataset into more sub-graphs is a good idea approach to identifying complex structures.Taking inspiration from this,we propose a novel neighbor method:Shared Natural Neighbors(SNaN).To demonstrate the superiority of this neighbor method,we propose a shared natural neighbors-based hierarchical clustering algorithm for discovering arbitrary-shaped clusters(HC-SNaN).Our algorithm excels in identifying both spherical clusters and manifold clusters.Tested on synthetic datasets and real-world datasets,HC-SNaN demonstrates significant advantages over existing clustering algorithms,particularly when dealing with datasets containing arbitrary shapes.

Multiscale and Auto-Tuned Semi-Supervised Deep Subspace Clustering and Its Application in Brain Tumor Clustering

In this paper,we introduce a novel Multi-scale and Auto-tuned Semi-supervised Deep Subspace Clustering(MAS-DSC)algorithm,aimed at addressing the challenges of deep subspace clustering in high-dimensional real-world data,particularly in the field of medical imaging.Traditional deep subspace clustering algorithms,which are mostly unsupervised,are limited in their ability to effectively utilize the inherent prior knowledge in medical images.Our MAS-DSC algorithm incorporates a semi-supervised learning framework that uses a small amount of labeled data to guide the clustering process,thereby enhancing the discriminative power of the feature representations.Additionally,the multi-scale feature extraction mechanism is designed to adapt to the complexity of medical imaging data,resulting in more accurate clustering performance.To address the difficulty of hyperparameter selection in deep subspace clustering,this paper employs a Bayesian optimization algorithm for adaptive tuning of hyperparameters related to subspace clustering,prior knowledge constraints,and model loss weights.Extensive experiments on standard clustering datasets,including ORL,Coil20,and Coil100,validate the effectiveness of the MAS-DSC algorithm.The results show that with its multi-scale network structure and Bayesian hyperparameter optimization,MAS-DSC achieves excellent clustering results on these datasets.Furthermore,tests on a brain tumor dataset demonstrate the robustness of the algorithm and its ability to leverage prior knowledge for efficient feature extraction and enhanced clustering performance within a semi-supervised learning framework.

Knowledge-Driven Possibilistic Clustering with Automatic Cluster Elimination

Traditional Fuzzy C-Means(FCM)and Possibilistic C-Means(PCM)clustering algorithms are data-driven,and their objective function minimization process is based on the available numeric data.Recently,knowledge hints have been introduced to formknowledge-driven clustering algorithms,which reveal a data structure that considers not only the relationships between data but also the compatibility with knowledge hints.However,these algorithms cannot produce the optimal number of clusters by the clustering algorithm itself;they require the assistance of evaluation indices.Moreover,knowledge hints are usually used as part of the data structure(directly replacing some clustering centers),which severely limits the flexibility of the algorithm and can lead to knowledgemisguidance.To solve this problem,this study designs a newknowledge-driven clustering algorithmcalled the PCM clusteringwith High-density Points(HP-PCM),in which domain knowledge is represented in the form of so-called high-density points.First,a newdatadensitycalculation function is proposed.The Density Knowledge Points Extraction(DKPE)method is established to filter out high-density points from the dataset to form knowledge hints.Then,these hints are incorporated into the PCM objective function so that the clustering algorithm is guided by high-density points to discover the natural data structure.Finally,the initial number of clusters is set to be greater than the true one based on the number of knowledge hints.Then,the HP-PCM algorithm automatically determines the final number of clusters during the clustering process by considering the cluster elimination mechanism.Through experimental studies,including some comparative analyses,the results highlight the effectiveness of the proposed algorithm,such as the increased success rate in clustering,the ability to determine the optimal cluster number,and the faster convergence speed.

Path-Based Clustering Algorithm with High Scalability Using the Combined Behavior of Evolutionary Algorithms

Path-based clustering algorithms typically generate clusters by optimizing a benchmark function.Most optimiza-tion methods in clustering algorithms often offer solutions close to the general optimal value.This study achieves the global optimum value for the criterion function in a shorter time using the minimax distance,Maximum Spanning Tree“MST”,and meta-heuristic algorithms,including Genetic Algorithm“GA”and Particle Swarm Optimization“PSO”.The Fast Path-based Clustering“FPC”algorithm proposed in this paper can find cluster centers correctly in most datasets and quickly perform clustering operations.The FPC does this operation using MST,the minimax distance,and a new hybrid meta-heuristic algorithm in a few rounds of algorithm iterations.This algorithm can achieve the global optimal value,and the main clustering process of the algorithm has a computational complexity of O�k2×n�.However,due to the complexity of the minimum distance algorithm,the total computational complexity is O�n2�.Experimental results of FPC on synthetic datasets with arbitrary shapes demonstrate that the algorithm is resistant to noise and outliers and can correctly identify clusters of varying sizes and numbers.In addition,the FPC requires the number of clusters as the only parameter to perform the clustering process.A comparative analysis of FPC and other clustering algorithms in this domain indicates that FPC exhibits superior speed,stability,and performance.

Efficient Clustering Network Based on Matrix Factorization

Contrastive learning is a significant research direction in the field of deep learning.However,existing data augmentation methods often lead to issues such as semantic drift in generated views while the complexity of model pre-training limits further improvement in the performance of existing methods.To address these challenges,we propose the Efficient Clustering Network based on Matrix Factorization(ECN-MF).Specifically,we design a batched low-rank Singular Value Decomposition(SVD)algorithm for data augmentation to eliminate redundant information and uncover major patterns of variation and key information in the data.Additionally,we design a Mutual Information-Enhanced Clustering Module(MI-ECM)to accelerate the training process by leveraging a simple architecture to bring samples from the same cluster closer while pushing samples from other clusters apart.Extensive experiments on six datasets demonstrate that ECN-MF exhibits more effective performance compared to state-of-the-art algorithms.

Improved Data Stream Clustering Method: Incorporating KD-Tree for Typicality and Eccentricity-Based Approach

Data stream clustering is integral to contemporary big data applications.However,addressing the ongoing influx of data streams efficiently and accurately remains a primary challenge in current research.This paper aims to elevate the efficiency and precision of data stream clustering,leveraging the TEDA(Typicality and Eccentricity Data Analysis)algorithm as a foundation,we introduce improvements by integrating a nearest neighbor search algorithm to enhance both the efficiency and accuracy of the algorithm.The original TEDA algorithm,grounded in the concept of“Typicality and Eccentricity Data Analytics”,represents an evolving and recursive method that requires no prior knowledge.While the algorithm autonomously creates and merges clusters as new data arrives,its efficiency is significantly hindered by the need to traverse all existing clusters upon the arrival of further data.This work presents the NS-TEDA(Neighbor Search Based Typicality and Eccentricity Data Analysis)algorithm by incorporating a KD-Tree(K-Dimensional Tree)algorithm integrated with the Scapegoat Tree.Upon arrival,this ensures that new data points interact solely with clusters in very close proximity.This significantly enhances algorithm efficiency while preventing a single data point from joining too many clusters and mitigating the merging of clusters with high overlap to some extent.We apply the NS-TEDA algorithm to several well-known datasets,comparing its performance with other data stream clustering algorithms and the original TEDA algorithm.The results demonstrate that the proposed algorithm achieves higher accuracy,and its runtime exhibits almost linear dependence on the volume of data,making it more suitable for large-scale data stream analysis research.

Hyperspectral Image Based Interpretable Feature Clustering Algorithm

Hyperspectral imagery encompasses spectral and spatial dimensions,reflecting the material properties of objects.Its application proves crucial in search and rescue,concealed target identification,and crop growth analysis.Clustering is an important method of hyperspectral analysis.The vast data volume of hyperspectral imagery,coupled with redundant information,poses significant challenges in swiftly and accurately extracting features for subsequent analysis.The current hyperspectral feature clustering methods,which are mostly studied from space or spectrum,do not have strong interpretability,resulting in poor comprehensibility of the algorithm.So,this research introduces a feature clustering algorithm for hyperspectral imagery from an interpretability perspective.It commences with a simulated perception process,proposing an interpretable band selection algorithm to reduce data dimensions.Following this,amulti-dimensional clustering algorithm,rooted in fuzzy and kernel clustering,is developed to highlight intra-class similarities and inter-class differences.An optimized P systemis then introduced to enhance computational efficiency.This system coordinates all cells within a mapping space to compute optimal cluster centers,facilitating parallel computation.This approach diminishes sensitivity to initial cluster centers and augments global search capabilities,thus preventing entrapment in local minima and enhancing clustering performance.Experiments conducted on 300 datasets,comprising both real and simulated data.The results show that the average accuracy(ACC)of the proposed algorithm is 0.86 and the combination measure(CM)is 0.81.

Research on Tensor Multi-Clustering Distributed Incremental Updating Method for Big Data

The scale and complexity of big data are growing continuously,posing severe challenges to traditional data processing methods,especially in the field of clustering analysis.To address this issue,this paper introduces a new method named Big Data Tensor Multi-Cluster Distributed Incremental Update(BDTMCDIncreUpdate),which combines distributed computing,storage technology,and incremental update techniques to provide an efficient and effective means for clustering analysis.Firstly,the original dataset is divided into multiple subblocks,and distributed computing resources are utilized to process the sub-blocks in parallel,enhancing efficiency.Then,initial clustering is performed on each sub-block using tensor-based multi-clustering techniques to obtain preliminary results.When new data arrives,incremental update technology is employed to update the core tensor and factor matrix,ensuring that the clustering model can adapt to changes in data.Finally,by combining the updated core tensor and factor matrix with historical computational results,refined clustering results are obtained,achieving real-time adaptation to dynamic data.Through experimental simulation on the Aminer dataset,the BDTMCDIncreUpdate method has demonstrated outstanding performance in terms of accuracy(ACC)and normalized mutual information(NMI)metrics,achieving an accuracy rate of 90%and an NMI score of 0.85,which outperforms existing methods such as TClusInitUpdate and TKLClusUpdate in most scenarios.Therefore,the BDTMCDIncreUpdate method offers an innovative solution to the field of big data analysis,integrating distributed computing,incremental updates,and tensor-based multi-clustering techniques.It not only improves the efficiency and scalability in processing large-scale high-dimensional datasets but also has been validated for its effectiveness and accuracy through experiments.This method shows great potential in real-world applications where dynamic data growth is common,and it is of significant importance for advancing the development of data analysis technology.

Examining the Use of Scott’s Formula and Link Expiration Time Metric for Vehicular Clustering

Implementing machine learning algorithms in the non-conducive environment of the vehicular network requires some adaptations due to the high computational complexity of these algorithms.K-clustering algorithms are simplistic,with fast performance and relative accuracy.However,their implementation depends on the initial selection of clusters number(K),the initial clusters’centers,and the clustering metric.This paper investigated using Scott’s histogram formula to estimate the K number and the Link Expiration Time(LET)as a clustering metric.Realistic traffic flows were considered for three maps,namely Highway,Traffic Light junction,and Roundabout junction,to study the effect of road layout on estimating the K number.A fast version of the PAM algorithm was used for clustering with a modification to reduce time complexity.The Affinity propagation algorithm sets the baseline for the estimated K number,and the Medoid Silhouette method is used to quantify the clustering.OMNET++,Veins,and SUMO were used to simulate the traffic,while the related algorithms were implemented in Python.The Scott’s formula estimation of the K number only matched the baseline when the road layout was simple.Moreover,the clustering algorithm required one iteration on average to converge when used with LET.

Design and construction of charged-particle telescope array for study of exotic nuclear clustering structure

The exploration of exotic shapes and properties of atomic nuclei,e.g.,αcluster and toroidal shape,is a fascinating field in nuclear physics.To study the decay of these nuclei,a novel detector aimed at detecting multipleα-particle events was designed and constructed.The detector comprises two layers of double-sided silicon strip detectors(DSSD)and a cesium iodide scintillator array coupled with silicon photomultipliers array as light sensors,which has the advantages of their small size,fast response,and large dynamic range.DSSDs coupled with cesium iodide crystal arrays are used to distinguish multipleαhits.The detector array has a compact and integrated design that can be adapted to different experimental conditions.The detector array was simulated using Geant4,and the excitation energy spectra of someα-clustering nuclei were reconstructed to demonstrate the performance.The simulation results show that the detector array has excellent angular and energy resolutions,enabling effective reconstruction of the nuclear excited state by multipleαparticle events.This detector offers a new and powerful tool for nuclear physics experiments and has the potential to discover interesting physical phenomena related to exotic nuclear structures and their decay mechanisms.

A Clustering-based Location Allocation Method for Delivery Sites under Epidemic Situations

To address the poor performance of commonly used intelligent optimization algorithms in solving location problems—specifically regarding effectiveness,efficiency,and stability—this study proposes a novel location allocation method for the delivery sites to deliver daily necessities during epidemic quarantines.After establishing the optimization objectives and constraints,we developed a relevant mathematical model based on the collected data and utilized traditional intelligent optimization algorithms to obtain Pareto optimal solutions.Building on the characteristics of these Pareto front solutions,we introduced an improved clustering algorithm and conducted simulation experiments using data from Changchun City.The results demonstrate that the proposed algorithm outperforms traditional intelligent optimization algorithms in terms of effectiveness,efficiency,and stability,achieving reductions of approximately 12%and 8%in time and labor costs,respectively,compared to the baseline algorithm.

Density Clustering Algorithm Based on KD-Tree and Voting Rules

Traditional clustering algorithms often struggle to produce satisfactory results when dealing with datasets withuneven density. Additionally, they incur substantial computational costs when applied to high-dimensional datadue to calculating similarity matrices. To alleviate these issues, we employ the KD-Tree to partition the dataset andcompute the K-nearest neighbors (KNN) density for each point, thereby avoiding the computation of similaritymatrices. Moreover, we apply the rules of voting elections, treating each data point as a voter and casting a votefor the point with the highest density among its KNN. By utilizing the vote counts of each point, we develop thestrategy for classifying noise points and potential cluster centers, allowing the algorithm to identify clusters withuneven density and complex shapes. Additionally, we define the concept of “adhesive points” between two clustersto merge adjacent clusters that have similar densities. This process helps us identify the optimal number of clustersautomatically. Experimental results indicate that our algorithm not only improves the efficiency of clustering butalso increases its accuracy.

Sparse Reconstructive Evidential Clustering for Multi-View Data

Although many multi-view clustering(MVC) algorithms with acceptable performances have been presented, to the best of our knowledge, nearly all of them need to be fed with the correct number of clusters. In addition, these existing algorithms create only the hard and fuzzy partitions for multi-view objects,which are often located in highly-overlapping areas of multi-view feature space. The adoption of hard and fuzzy partition ignores the ambiguity and uncertainty in the assignment of objects, likely leading to performance degradation. To address these issues, we propose a novel sparse reconstructive multi-view evidential clustering algorithm(SRMVEC). Based on a sparse reconstructive procedure, SRMVEC learns a shared affinity matrix across views, and maps multi-view objects to a 2-dimensional humanreadable chart by calculating 2 newly defined mathematical metrics for each object. From this chart, users can detect the number of clusters and select several objects existing in the dataset as cluster centers. Then, SRMVEC derives a credal partition under the framework of evidence theory, improving the fault tolerance of clustering. Ablation studies show the benefits of adopting the sparse reconstructive procedure and evidence theory. Besides,SRMVEC delivers effectiveness on benchmark datasets by outperforming some state-of-the-art methods.

Deep Reinforcement Learning Based Joint Cooperation Clustering and Downlink Power Control for Cell-Free Massive MIMO

In recent times,various power control and clustering approaches have been proposed to enhance overall performance for cell-free massive multipleinput multiple-output(CF-mMIMO)networks.With the emergence of deep reinforcement learning(DRL),significant progress has been made in the field of network optimization as DRL holds great promise for improving network performance and efficiency.In this work,our focus delves into the intricate challenge of joint cooperation clustering and downlink power control within CF-mMIMO networks.Leveraging the potent deep deterministic policy gradient(DDPG)algorithm,our objective is to maximize the proportional fairness(PF)for user rates,thereby aiming to achieve optimal network performance and resource utilization.Moreover,we harness the concept of“divide and conquer”strategy,introducing two innovative methods termed alternating DDPG(A-DDPG)and hierarchical DDPG(H-DDPG).These approaches aim to decompose the intricate joint optimization problem into more manageable sub-problems,thereby facilitating a more efficient resolution process.Our findings unequivo-cally showcase the superior efficacy of our proposed DDPG approach over the baseline schemes in both clustering and downlink power control.Furthermore,the A-DDPG and H-DDPG obtain higher performance gain than DDPG with lower computational complexity.