Trees provide multiple ecosystem services such as carbon sequestration,hydrological regulation and habitat for arboreal animals.However,they are often removed to support agricultural enterprises.Despite the importance...Trees provide multiple ecosystem services such as carbon sequestration,hydrological regulation and habitat for arboreal animals.However,they are often removed to support agricultural enterprises.Despite the importance of tree remnants,we know relatively little about how soils differ across sites of varying condition.Here,we describe a study where we examined the relative effects of trees,compared with unvegetated interspaces,on soil functions in remnant patches at sites in good and poor condition in two eucalypt communities in an irrigation area in eastern Australia.We found that,in general,carbon and nutrient cycling were relatively greater beneath trees,and in surface soils,but there were no clear trends in relation to site condition.The values of most soil attributes(e.g.,soluble and exchangeable cations,nitrogen,phosphorus)were greater beneath trees,indicating strong fertile island effects in both communities.Overall,our study confirms the importance of trees in remnant patches in agricultural landscapes,particularly those in sites of poor condition.It also suggests that soil processes may still be relatively intact,even in sites in poor condition.Our study reinforces the need to protect trees in remnant woodland reserves to maintain critical ecosystem functions related to nutrient retention.These remnants are important for achieving sustainable management of agricultural systems.展开更多
The effect of functionalized graphene on the growth and development of Vicia faba L.was investigated by analyzing its impact on the composition and diversity of the microbial community in rhizosphere peat soil.Seedlin...The effect of functionalized graphene on the growth and development of Vicia faba L.was investigated by analyzing its impact on the composition and diversity of the microbial community in rhizosphere peat soil.Seedlings of V.faba planted in this peat soil were treated with either distilled water(CK)or 25 mg·L^(−1)(G25)of functionalized graphene solution.Results showed that the height and root length of V.faba seedlings in the G25 group were significantly larger than those in CK group.The microbial com-munity was analyzed by amplifying and sequencing the 16S rRNA gene V_(3)-V_(4) region of bacteria and internal transcribed spacer re-gion of fungi in rhizosphere soil using Illumina MiSeq technology.Alpha and beta diversity analysis indicated that functionalized graphene increased the richness and diversity of bacteria and fungi in the V.faba rhizosphere peat soil.The abundances of three ni-trogen cycling-related bacteria,Hydrogenophaga,Sphingomonas and Nitrosomonadaceae,were also altered after treatment with the functionalized graphene.The relative abundance of Basilicum,related to soil phosphorus solubilization,decreased in the fungal com-munity,while the relative abundance of Clonostachys and Dimorphospora,which exhibited strong biological control over numerous fungal plant pathogens,nematodes and insects,increased in the soil after functionalized graphene treatment.Redundancy analysis re-vealed that the potential of hydrogen(pH),organic matter,and total phosphorus contributed the most to the changes in bacterial and fungal community composition in the rhizosphere soil.Overall,our findings suggested that the addition of functionalized graphene altered the relative abundances of nitrogen and phosphorus cycling-related microorganisms in peat soil,promoting changes in the physicochemical properties of the soil and ultimately leading to the improved growth of V.faba plants.展开更多
Changes in soil biological and biochemical properties under different land uses in the subtropical region of China were investigated in order to develop rational cultivation and fertilization management. A small water...Changes in soil biological and biochemical properties under different land uses in the subtropical region of China were investigated in order to develop rational cultivation and fertilization management. A small watershed of subtropical region of China was selected for this study. Land uses covered paddy fields, vegetable farming, fruit trees, upland crops, bamboo stands, and forestry. Soil biological and biochemical properties included soil organic C and nutrient contents, mineralization of soil organic C, and soil microbial biomass and community functional diversity. Soil organic C and total N contents, microbial biomass C and N, and respiration intensity under different land uses were changed in the following order: paddy fields (and vegetable farming) 〉 bamboo stands 〉 fruit trccs (and upland). The top surface (0-15 cm) paddy fields (and vegetable farming) were 76.4 and 80.8% higher in soil organic C and total N contents than fruit trees (and upland) soils, respectively. Subsurface paddy soils (15-30 cm) were 59.8 and 67.3% higher in organic C and total N than upland soils, respectively. Soil microbial C, N and respiration intensity in paddy soils (0-15 cm) were 6.36, 3.63 and 3.20 times those in fruit tree (and upland) soils respectively. Soil microbial metabolic quotient was in the order: fruit trees (and upland) 〉 forestry 〉 paddy fields. Metabolic quotient in paddy soils was only 47.7% of that in fruit tree (and upland) soils. Rates of soil organic C mineralization during incubation changed in the order: paddy fields 〉 bamboo stands 〉 fruit trees (and upland) and soil bacteria population: paddy fields 〉 fruit trees (and upland) 〉 forestry. No significant difference was found for fungi and actinomycetes populations. BIOLOG analysis indicated a changing order of paddy fields 〉 fruit trees (and upland) 〉 forestry in values of the average well cell development (AWCD) and functional diversity indexes of microbial community. Results also showed that the conversion from paddy fields to vegetable farming for 5 years resulted in a dramatic increase in soil available phosphorus content while insignificant changes in soil organic C and total N content due to a large inputs of phosphate fertilizers. This conversion caused 53, 41.5, and 41.3% decreases in soil microbial biomass C, N, and respiration intensity, respectively, while 23.6% increase in metabolic quotient and a decrease in soil organic C mineralization rate. Moreover, soil bacteria and actinomycetes populations were increased slightly, while fungi population increased dramatically. Functional diversity indexes of soil microbial community decreased significantly. It was concluded that land uses in the subtropical region of China strongly affected soil biological and biochemical properties. Soil organic C and nutrient contents, mineralization of organic C and functional diversity of microbial community in paddy fields were higher than those in upland and forestry. Overuse of chemical fertilizers in paddy fields with high fertility might degrade soil biological properties and biochemical function, resulting in deterioration of soil biological quality.展开更多
The application of straw and biochar is widely practiced for the improvement of soil fertility.However,its impact on microbial functional profiles,particularly with regard to paddy soils,is not well understood.The aim...The application of straw and biochar is widely practiced for the improvement of soil fertility.However,its impact on microbial functional profiles,particularly with regard to paddy soils,is not well understood.The aim of this study was to investigate the diversity of microbial carbon use patterns in paddy soils amended with straw or straw-derived biochar in a 3-year field experiment in fallow soil and at various development stages of a rice crop(i.e.,tillering and blooming).We applied the community level physiological profiling approach,with 15 substrates(sugars,carboxylic and amino acids,and phenolic acid).In general,straw application resulted in the greatest microbial functional diversity owing to the greater number of available C sources than in control or biochar plots.Biochar amendment promoted the use of α-ketoglutaric acid,the mineralization of which was higher than that of any other substrate.Principal component analyses indicated that microbial functional diversity in the biochar-amended soil was separated from those of the straw-amended and control soils.Redundancy analyses revealed that soil organic carbon content was the most important factor regulating the pattern of microbial carbon utilization.Rhizodeposition and nutrient uptake by rice plants modulated microbial functions in paddy soils and stimulated the microbial use of N-rich substances,such as amino acids.Thus,our results demonstrated that the functional diversity of microorganisms in organic amended paddy soils is affected by both physicochemical properties of amendment and plant growth stage.展开更多
An experiment with seven N, P, K-fertilizer treatments, i.e., control (no fertilizer), NP, NK, PK, NPK, NP2K, and NPK2 where P2 and K2 indicate double amounts of P and K fertilizers respectively, was conducted to exam...An experiment with seven N, P, K-fertilizer treatments, i.e., control (no fertilizer), NP, NK, PK, NPK, NP2K, and NPK2 where P2 and K2 indicate double amounts of P and K fertilizers respectively, was conducted to examine the effect of long-term continuous application of chemical fertilizers on microbial biomass and functional diversity of a black soil (Udoll in the USDA Soil Taxonomy) in Northeast China. The soil microbial biomass C ranged between 94 and 145 mg kg-1, with the NK treatment showing a lower biomass; the functional diversity of soil microbial community ranged from 4.13 to 4.25, with an increasing tendency from control to double-fertilizer treatments, and to triple-fertilizer treatments. The soil microbial biomass, and the microbial functional diversity and evenness did not show any significant differences among the different fertilizer treatments including control, suggesting that the long-term application of chemical fertilization would not result in significant changes in the microbial characteristics of the black soil.展开更多
Ecological effects of crude oil residues on weed rhizospheres are still vague. The quantitative and diversity changes and metabolic responses of soil-bacterial communities in common dandelion (Taraxacum officinale),...Ecological effects of crude oil residues on weed rhizospheres are still vague. The quantitative and diversity changes and metabolic responses of soil-bacterial communities in common dandelion (Taraxacum officinale), jerusalem artichoke (Silphiurn perfoliatum L.) and evening primrose (A colypha australis L.) rhizospheric soils were thus examined using the method of carbon source utilization. The results indicated that there were various toxic effects of crude oil residues on the growth and reproduction of soil bacteria, but the weed rhizospheres could mitigate the toxic effects. Total heterotrophic counting colony-forming units (CFUs) in the rhizospheric soils were significantly higher than those in the non-rhizospheric soils. The culturable soil-bacterial CFUs in the jerusalem artichoke (S. perfoliatum) rhizosphere polluted with 0.50 kg/pot of crude oil residues were almost twice as much as those with 0.25 kg/pot and without the addition of crude oil residues. The addition of crude oil residues increased the difference in substrate evenness, substrate richness, and substrate diversity between non-rhizospheric and rhizospheric soils of T. officinale and A. australis, but there was no significant (p〉0.05) difference in the Shannon's diversity index between non-rhizospheric and rhizospheric soils of S. perfoliatum. The rhizospheric response of weed species to crude oil residues suggested that S. perfoliatum may be a potential weed species for the effective plant-microorganism bioremediation of contaminated soils by crude oil residues.展开更多
With the widespread cultivation of transgenic crops, there is increasing concern about unintended effects of these crops on soil environmental quality. In this study, we used the Biolog method and ELISA to evaluate th...With the widespread cultivation of transgenic crops, there is increasing concern about unintended effects of these crops on soil environmental quality. In this study, we used the Biolog method and ELISA to evaluate the possible effects of Osr HSA transgenic rice on soil microbial utilization of carbon substrates under field conditions. There were no significant differences in average well-color development(AWCD) values, Shannon–Wiener diversity index(H), Simpson dominance indices(D) and Shannon–Wiener evenness indices(E) of microbial communities in rhizosphere soils at eight samplings between Osr HSA transgenic rice and its non-transgenic counterpart. The main carbon sources utilized by soil microbes were carbohydrates, carboxylic acids, amino acids and polymers. The types,capacities and patterns of carbon source utilization by microbial communities in rhizosphere soils were similar throughout the detection period. We detected no Osr HSA protein in the roots of Osr HSA transgenic rice. We concluded that Osr HSA transgenic rice and the r HSA protein it produced did not alter the functional diversity of microbial communities in the rhizosphere.展开更多
Soil microbial communities play an essential role in maintaining soil fertility and are considered as ecological indicators to evaluate soil health.In the present study,we examined the influence of almost 4 years of f...Soil microbial communities play an essential role in maintaining soil fertility and are considered as ecological indicators to evaluate soil health.In the present study,we examined the influence of almost 4 years of fertilization[no fertilizer(CK),nitrogen alone(N),nitrogen,phosphorus and potassium chemical fertilizer(NPK),organicmanure(M),nitrogen plus organic manure(NM),and NPK plus organic manure(NPKM)]on soil fertility and the functional diversity of soil microbial communities in an apple orchard.Compared to CK,fertilization increased soil organic carbon,total nitrogen,and available nutrients,but reduced soil pH in N and NPK treatments.The highest microbial biomass carbon and nitrogen,most probable number of actinomycetes,bacteria,and fungi occurred in the NPKM treatment.The average well color development(AWCD)values followed the order of NPKM>M>NPK and NM>CK and N.The Shannon index in organic manure treatments were significantly higher than in control and in treatments without organic manure.The principal component analysis showed that manure treatment was significantly separated from other treatments.These results indicated that organic manure applied alone or in combination with chemical fertilizers would increase soil fertility and functional diversity of soil microbial communities.Moreover,applying balanced N,P,K fertilizer in combination with organic manure was found to be superior to the use of a single fertilizer in improving soil microbial community quality.展开更多
Knowledge of potential anaerobic soil N mineralization is important for nitrogen fertilizer application. Instead of time-consuming laboratory incubation, we attempt to use pedo-transfer functions (PTFs) approach to ge...Knowledge of potential anaerobic soil N mineralization is important for nitrogen fertilizer application. Instead of time-consuming laboratory incubation, we attempt to use pedo-transfer functions (PTFs) approach to get this information. 27 soil samples with various soil depths were collected from paddy field, woodland and tea field in subtropical central China, anaerobically incubated at 35°C for 7 weeks to determine N mineralization, which was fitted by a modified double exponential model with two parameters (the fraction of active N pool (f) and mineralization rate constant (k) for active N pool). The PTFs for parameters were developed from significant soil properties using multiple stepwise regression method. Parameter f (range: 1.59% - 10.4%, mean: 5.2%) was mainly correlated with soil total N (TN), organic C (SOC), sand and silt particle contents (r = -0.59 - 0.69, p k (range: 0.027 - 0.155 d-1, mean: 0.97 d-1) was significantly related to TN, SOC, clay content, C to N ratio and pH (r = -0.6 - 0.71, p f (R2 = 0.72, p TN and pH) for parameter k (R2 = 0.61, p < 0.01). The developed PTFs, integrating various land uses and soil depths, suggest that basic soil properties are helpful for estimation of anaerobic soil N mineralization.展开更多
The yield of winter wheat is hindered by drought and low temperature in the Loess Plateau of China.Two common mulching methods to conserve soil moisture,ridge furrows with plastic film mulching (RP) and flat soil surf...The yield of winter wheat is hindered by drought and low temperature in the Loess Plateau of China.Two common mulching methods to conserve soil moisture,ridge furrows with plastic film mulching (RP) and flat soil surfaces with plastic film mulching (FP) are helpful for wheat production.Our previous study indicated that FP could improve wheat yield more effectively than RP,but the reason remains unclear.The effect of mulching method on functional bacteria also needs to be further studied.In this study,winter wheat was employed to evaluate the impacts of mulching method on soil temperature,moisture content,microorganisms and grain yield.The results showed that FP had a warming effect when the soil temperature was low and a cooling effect when the temperature was too high.However,the ability to regulate soil temperature in the RP method was unstable and varied with year.The lowest negative accumulated soil temperature was found in the FP treatment,which was 20–89 and 43–99%lower than that of the RP and flat sowing with non-film mulching control (NP) treatments,respectively.Deep soil moisture was better transferred to topsoil for wheat growth in the FP and RP treatments than the NP treatment,which made the topsoil moisture in the two treatments (especially FP) more sufficient than that in the NP treatment during the early growing stage of wheat.However,due to the limited water resources in the study area,there was almost no difference between treatments in topsoil water storage during the later stage.The wheat yield in the FP treatment was significantly higher,by 12–16and 23–56%,respectively,than in the RP and NP treatments.Significant positive correlations were observed among the negative accumulated soil temperature,spike number and wheat yield.The Chao1 and Shannon indices in the RP treatment were 17 and 3.9%higher than those in the NP treatment,respectively.However,according to network relationship analysis,the interspecific relationships of bacteria were weakened in the RP treatment.Phosphorus solubilizing,ammonification and nitrification bacteria were more active in the RP than in the FP treatment,and microbes with nitrate reduction ability and plant pathogens were inhibited in the RP treatment,which improved nutrient availability and habitat for wheat.展开更多
As the population continues to shrink in the black soil region of Northeast China since 2000,it is critical to master the impact of population shrinkage on rural functions to realize rural revitalization and sustainab...As the population continues to shrink in the black soil region of Northeast China since 2000,it is critical to master the impact of population shrinkage on rural functions to realize rural revitalization and sustainable development.In this study,we focused on the impacts of depopulation on the evolution and interrelationship of rural subfunctions.Based on the rural function indexes system,the TOPSIS(Technique for Order Preference by Similarity to an Ideal Solution)method,spatial analysis method,and mathematical statistics analysis method were used to summarize the spatial and temporal characteristics of rural function development,as well as the effect of population shrinkage in the typical black soil region of Northeast China.The results showed that depopulation varied in the extent and duration between the forested region and plain areas,which both impacted the trajectories of rural subfunctions evolution.For the economic development function and ecological conservation function,the effect of continuous slight depopulation was beneficial,while the effect of rapid depopulation was adverse,which was exactly opposite to the agricultural production function.All forms of population shrinkage were conducive to the development of the social security function.With the deepening population shrinkage,depopulation mainly promoted the collaborative development between subfunctions in this study,except the relationship between agricultural production and social security function.But effects of depopulation on the interrelationship of rural subfunctions varied between the forested region and plain areas in some cases.The results provided evidence for the cognition that population shrinkage had complicated effects on rural subfunctions.展开更多
Soil temperature regime(STR)is important for soil classification and land use.Generally,STR is delineated by estimating the mean annual soil temperature at a depth of 50 cm(MAST50)according to the Chinese Soil Taxonom...Soil temperature regime(STR)is important for soil classification and land use.Generally,STR is delineated by estimating the mean annual soil temperature at a depth of 50 cm(MAST50)according to the Chinese Soil Taxonomy(CST).However,delineating the STR of China remains a challenge due to the difficulties in accurately estimating MAST50.The objectives of this study were to explore environmental factors that influence the spatial variation of MAST50 and generate an STR map for China.Soil temperature measurements at 40 and 80 cm depth were collected from 386 National Meteorological Stations in China during 1971–2000.The MAST50 was calculated as the average mean annual soil temperature(MAST)from 1971–2000 between 40 and 80 cm depths.In addition,2048 mean annual air temperature(MAAT)measurements from 1971 to 2000 were collected from the National Meteorological Stations across China.A zonal pedotransfer function(PTF)was developed based on the ensemble linear regression kriging model to predict the MAST50 in three topographic steps of China.The results showed that MAAT was the most important variable related to the variation of MAST50.The zonal PTF was evaluated with a 10%validation dataset with a mean absolute error(MAE)of 0.66°C and root mean square error(RMSE)of 0.78°C,which were smaller than the unified model with MAE of 0.83°C and RMSE of 0.96°C,respectively.This study demonstrated that the zonal PTF helped improve the accuracy of the predicted MAST50 map.Based on the prediction results,an STR map across China was generated to provide a consistent scientific base for the improvement and application of CST and land use support.展开更多
To date,much of research on revegetation has focused on soil microorganisms due to their contributions in the formation of soil and soil remediation process.However,little is known about the soil bacteria and their fu...To date,much of research on revegetation has focused on soil microorganisms due to their contributions in the formation of soil and soil remediation process.However,little is known about the soil bacteria and their functions respond to the diverse vegetational types in the process of vegetation restoration.Effects of dominated vegetation,i.e.,Artemisia halodendron Turcz Ex Bess,Caragana microphylla Lam.,Hedysarum fruticosum Pall.and Pinus sylvestris L.on bacterial community structures and their potential functions in the Hulun Buir Sandy Land,China were determined using high-throughput 16S rRNA gene sequencing and phylogenetic investigation of communities by reconstruction of unobserved states(PICRUSt)in 2015.Although the dominant phyla of soil bacterial community among different types of vegetation,including Proteobacteria,Actinobacteria,Acidobacteria,Bacteroidetes and Firmicutes,were similar,the relative abundance of these dominant groups significantly differed,indicating that different types of vegetation might result in variations in the composition of soil bacterial community.In addition,functional genes of bacterial populations were similar among different types of vegetation,whereas its relative abundance was significantly differed.Most carbon fixation genes showed a high relative abundance in P.sylvestris,vs.recalcitrant carbon decomposition genes in A.halodendron,suggesting the variations in carbon cycling potential of different types of vegetation.Abundance of assimilatory nitrate reduction genes was the highest in P.sylvestris,vs.dissimilatory nitrate reduction and nitrate reductase genes in A.halodendron,indicating higher nitrogen gasification loss and lower nitrogen utilization gene functions in A.halodendron.The structures and functional genes of soil bacterial community showed marked sensitivities to different plant species,presenting the potentials for regulating soil carbon and nitrogen cycling.展开更多
Exploration of soil environmental characteristics governing soil microbial community structure and activity may improve our understanding of biogeochemical processes and soil quality. The impact of soil environmental ...Exploration of soil environmental characteristics governing soil microbial community structure and activity may improve our understanding of biogeochemical processes and soil quality. The impact of soil environmental characteristics especially organic carbon availability after 15-yr different organic and inorganic fertilizer inputs on soil bacterial community structure and functional metabolic diversity of soil microbial communities were evaluated in a 15-yr fertilizer experiment in Changping County, Beijing, China. The experiment was a wheat-maize rotation system which was established in 1991 including four different fertilizer treatments. These treatments included: a non-amended control(CK), a commonly used application rate of inorganic fertilizer treatment(NPK); a commonly used application rate of inorganic fertilizer with swine manure incorporated treatment(NPKM), and a commonly used application rate of inorganic fertilizer with maize straw incorporated treatment(NPKS). Denaturing gradient gel electrophoresis(DGGE) of the 16 S r RNA gene was used to determine the bacterial community structure and single carbon source utilization profiles were determined to characterize the microbial community functional metabolic diversity of different fertilizer treatments using Biolog Eco plates. The results indicated that long-term fertilized treatments significantly increased soil bacterial community structure compared to CK. The use of inorganic fertilizer with organic amendments incorporated for long term(NPKM, NPKS) significantly promoted soil bacterial structure than the application of inorganic fertilizer only(NPK), and NPKM treatment was the most important driver for increases in the soil microbial community richness(S) and structural diversity(H). Overall utilization of carbon sources by soil microbial communities(average well color development, AWCD) and microbial substrate utilization diversity and evenness indices(H' and E) indicated that long-term inorganic fertilizer with organic amendments incorporated(NPKM, NPKS) could significantly stimulate soil microbial metabolic activity and functional diversity relative to CK, while no differences of them were found between NPKS and NPK treatments. Principal component analysis(PCA) based on carbon source utilization profiles also showed significant separation of soil microbial community under long-term fertilization regimes and NPKM treatment was significantly separated from the other three treatments primarily according to the higher microbial utilization of carbohydrates, carboxylic acids, polymers, phenolic compounds, and amino acid, while higher utilization of amines/amides differed soil microbial community in NPKS treatment from those in the other three treatments. Redundancy analysis(RDA) indicated that soil organic carbon(SOC) availability, especially soil microbial biomass carbon(Cmic) and Cmic/SOC ratio are the key factors of soil environmental characteristics contributing to the increase of both soil microbial community structure and functional metabolic diversity in the long-term fertilization trial. Our results showed that long-term inorganic fertilizer and swine manure application could significantly improve soil bacterial community structure and soil microbial metabolic activity through the increases in SOC availability, which could provide insights into the sustainable management of China's soil resource.展开更多
In the present study, a biofertilizer on the basis of Streptomyces fumanus gn-2 was used for the treatment of wheat and soybean seeds (dose 104 spore/ml) before planting them in soil with low fertility in order to det...In the present study, a biofertilizer on the basis of Streptomyces fumanus gn-2 was used for the treatment of wheat and soybean seeds (dose 104 spore/ml) before planting them in soil with low fertility in order to determine the effect of this biological agent on germination rate;the growth of seedlings, shoots, and the maturation phase of plants;the rhizosphere’s functional biodiversity;and the resistance of these plants to pathogens. Seeds were soaked in the suspension for a period of two or three hours. During the growing season of the crop, no additional fertilizing and spraying of a biopesticide against diseases or pests occurred. Despite the soil having low fertility, low quantities of organic matter, and not having been before used for the cultivation of agricultural plants, this biofertilizer showed a strong stimulatory effect on the growth of seeds and seedlings of wheat and soybeans. The average germination and seed vigor increased by 1.5 - 2.0 times, and the phenophases were accelerated to three to five days. In all phases of vegetation, the ammonifying bacteria in the presence of an antagonist (a biological agent) developed rapidly and were constantly present in significant numbers in the rhizosphere. Streptomyces fumanus introduced into non-sterile soil entered into competition with the local soil microflora and had the ability to colonize the rhizosphere system of plants. The use of a formulation of Streptomyces gn-2 has improved the composition of rhizosphere microflora, attracting saprophytic microorganisms: ammonificators and oligotrophs. The presence of the biocontrol microorganism Streptomyces fumanus in the rhizosphere plays an important role in enhancing the growth and development of useful groups, such as nitrogen-fixing bacteria.展开更多
The aim of this study was to test the impact of Rhizophagus irregularis, an arbuscular mycorrhizal fungus (AMF), on durum wheat growth and soil microbial functionalities in a field inoculation trial conducted in Moroc...The aim of this study was to test the impact of Rhizophagus irregularis, an arbuscular mycorrhizal fungus (AMF), on durum wheat growth and soil microbial functionalities in a field inoculation trial conducted in Morocco. The results showed that i) the R. irregularis inoculum effectively improved wheat growth, ii) wheat growth promotion depended on the soil mycorrhizal infectivity and iii) functional abilities of soil microflora depended on AMF inoculation. This study confirms that field AMF inoculation can be proposed as an effective agronomic practice in wheat production and as a sustainable cultural practice to manage soil biofunctioning. To fully promote inoculation practices, a better knowledge of AMF ecology has to be acquired to better adapt AMF inoculation to environmental conditions, and thus warrant better yields and agricultural sustainability.展开更多
The eff ect of seasons on the soil microbiome in a Larix gmelinii forest of Mohe,China,where winter temperatures are generally below−40°C,was evaluated with metagenomics analysis.Taxonomic profi ling using sequen...The eff ect of seasons on the soil microbiome in a Larix gmelinii forest of Mohe,China,where winter temperatures are generally below−40°C,was evaluated with metagenomics analysis.Taxonomic profi ling using sequencing information revealed that Proteobacteria,Actinobacteria,Acidobacteria and Verrucomicrobia were the dominant phyla in spring,summer,and fall,as were Bradyrhizobium,Chthoniobacter,Streptomyces,Acid Candidatus Koribacter at the genus level.Some species that were abundant in spring and fall greatly diminished in abundance in summer.Clusters of orthologous groups(COG)of proteins,carbohydrate-active enzymes(CAZy),Kyoto Encyclopedia of Genes and Genomes(KEGG)and NCBI databases were used to elucidate the function of diverse proteins and metabolites of the microbial community of L.gmelinii forest.COG analysis showed that fewer genes were detected in spring than in fall and summer,indicating that many soil microbes in the L.gmelinii forest were not tolerant to cold.Based on KEGG analysis,some pathways in the soil microbes were activated in spring and autumn and deactivated in summer.CAZy analysis revealed that most CAZy were more active in summer than in spring or autumn and were severely inhibited in the spring.Many functional pathways,proteins,and CAZy involved in the community changes were concerned with cold or heat resistance.Therefore,the soil in the L.gmelinii forest can be a valuable resource for further research on heat and cold tolerance of soil microbes.展开更多
[Objective] This study aimed to investigation the effects of tranagenic Bt + CpTI cotton cultivation on functional diversity of microbial communities in rhizospbere soils. E Method] By using the Biolog method, a comp...[Objective] This study aimed to investigation the effects of tranagenic Bt + CpTI cotton cultivation on functional diversity of microbial communities in rhizospbere soils. E Method] By using the Biolog method, a comparative study was conducted on the utilization level of single carbon source by microbes in the rhi- zosphere soils of transgenic Bt + CpTI cotton sGK321 and its parental conventional cotton ' Shiyuan 321' at different growth stages. [ Result ] The results showed that, compared with the parental conventional cotton, the average well-color development (AWCD) value of micmhial communities in rhizospbere soils of transgenie Bt + CpTI cotton were significantly higher (P 〈 O. 05) at seedling stage and budding stage while significantly lower at flower and boll stage and bell opening stage. Shannon-Wiener diversity index (H) and Simpson dominance index (D) of microbial communities in rhlzesphere soils of transgenic cotton and conventional cotton varied with the different growth stages, whereas the Shannon-Wiener evenness index (E) showed no significant difference between transgenie cotton and convention- al cotton at four growth stages. Principal component analysis indicated that the patterns of carbon source utilization by microbial communities in rhizospbere soils were similar among transgenic cotton at seeding stage and flower and boll stage and parental conventional cotton at seeding stage and budding stage, which were also similar between tranagenic cotton at budding stage and parental conventional cotton at flower and boll stage. [ Conclusion] Analysis of different carbon sources indi- cated that the main carbon sources utilized by soil microbes were carbohydrates, amino acids, carboxylie acids and polymers.展开更多
To improve the serious situation of soil degradation in China, tests were carried out to study the improvement effects of Russian Melilotus officinalis on the low base saturation acid soil, the alkaline-saline soil an...To improve the serious situation of soil degradation in China, tests were carried out to study the improvement effects of Russian Melilotus officinalis on the low base saturation acid soil, the alkaline-saline soil and the heavy metal contaminated soil. The results showed that M. officinalis could improve the low base saturation acid soil, increase the salt, alkali content, mineral nutrition and organic nutrient, which indicated that M. officinalis could be planted in the acid soil, and had a significant ecological effect on soil improvement. M. officinalis achieved a remarkable effect on improving the alkaline-saline soil (pH 8.5-9.5) that the soil desalted, dealkalized and had more organic nutrient. Moreover, M. officinalis could improve the heavy metal contaminated soil and had the ability to enrich and transform heavy metal elements, especially Cd and Ni, thereby presenting significant repair effects on soil improvement. Therefore, Russian M. officinalis had multiple-effects on degraded soil improvement, so it is worthy of application and popularization.展开更多
To assess the effects of single and combined pollution of cadmium (Cd) and mercury (Hg) on soil micro-bial community structural and functional diversities, an incubation experiment was conducted, by employing two soil...To assess the effects of single and combined pollution of cadmium (Cd) and mercury (Hg) on soil micro-bial community structural and functional diversities, an incubation experiment was conducted, by employing two soils, namely, the marine sediment silty loam soil and the yellowish-red soil, in which five levels of Cd, Hg and Cd and Hg in combination were added. After being incubated for 56 days, the phospholipid fatty acids (PLFAs) profile and sole carbon source utilization pattern (BIOLOG) of the samples were tested. The results showed that the compo-sition of the microbial communities changed significantly at different levels of metals application. The principal component analyses (PCA) of PLFAs indicated that the structure of the microbial community was also significantly altered with increasing levels of metals, with increasing PLFAs biomarkers for fungi and actinomycetes, and in-creasing ratio of Gram-positive to Gram-negative bacteria. Sole carbon source utilization pattern analysis revealed that single and combined application of Cd and Hg inhibited significantly the functional activity of soil microorgan-isms, the functional diversity indices [Richness (S), Shannon-Wiener indices (H) and Evenness (EH)] were signifi-cantly lower in polluted soils than those in non-polluted soils, which also significantly altered with increasing levels of metals. PCA for the sole carbon source utilization pattern also indicated that the metal contamination could result in a variable soil microbial community. The results revealed that the combination of Cd and Hg had higher toxicity to soil microbial community structural and functional diversities than the individual application of Cd or Hg.展开更多
基金supported by the Fundamental Research Funds for the Central Universities of China and David Eldridge by the Hermon Slade Foundation.
文摘Trees provide multiple ecosystem services such as carbon sequestration,hydrological regulation and habitat for arboreal animals.However,they are often removed to support agricultural enterprises.Despite the importance of tree remnants,we know relatively little about how soils differ across sites of varying condition.Here,we describe a study where we examined the relative effects of trees,compared with unvegetated interspaces,on soil functions in remnant patches at sites in good and poor condition in two eucalypt communities in an irrigation area in eastern Australia.We found that,in general,carbon and nutrient cycling were relatively greater beneath trees,and in surface soils,but there were no clear trends in relation to site condition.The values of most soil attributes(e.g.,soluble and exchangeable cations,nitrogen,phosphorus)were greater beneath trees,indicating strong fertile island effects in both communities.Overall,our study confirms the importance of trees in remnant patches in agricultural landscapes,particularly those in sites of poor condition.It also suggests that soil processes may still be relatively intact,even in sites in poor condition.Our study reinforces the need to protect trees in remnant woodland reserves to maintain critical ecosystem functions related to nutrient retention.These remnants are important for achieving sustainable management of agricultural systems.
文摘The effect of functionalized graphene on the growth and development of Vicia faba L.was investigated by analyzing its impact on the composition and diversity of the microbial community in rhizosphere peat soil.Seedlings of V.faba planted in this peat soil were treated with either distilled water(CK)or 25 mg·L^(−1)(G25)of functionalized graphene solution.Results showed that the height and root length of V.faba seedlings in the G25 group were significantly larger than those in CK group.The microbial com-munity was analyzed by amplifying and sequencing the 16S rRNA gene V_(3)-V_(4) region of bacteria and internal transcribed spacer re-gion of fungi in rhizosphere soil using Illumina MiSeq technology.Alpha and beta diversity analysis indicated that functionalized graphene increased the richness and diversity of bacteria and fungi in the V.faba rhizosphere peat soil.The abundances of three ni-trogen cycling-related bacteria,Hydrogenophaga,Sphingomonas and Nitrosomonadaceae,were also altered after treatment with the functionalized graphene.The relative abundance of Basilicum,related to soil phosphorus solubilization,decreased in the fungal com-munity,while the relative abundance of Clonostachys and Dimorphospora,which exhibited strong biological control over numerous fungal plant pathogens,nematodes and insects,increased in the soil after functionalized graphene treatment.Redundancy analysis re-vealed that the potential of hydrogen(pH),organic matter,and total phosphorus contributed the most to the changes in bacterial and fungal community composition in the rhizosphere soil.Overall,our findings suggested that the addition of functionalized graphene altered the relative abundances of nitrogen and phosphorus cycling-related microorganisms in peat soil,promoting changes in the physicochemical properties of the soil and ultimately leading to the improved growth of V.faba plants.
基金the National Natural Science Foundation of China (40471066) the Knowledge Innovation Program of the Chinese Academy of Sciences (KZCX3-SW-417).
文摘Changes in soil biological and biochemical properties under different land uses in the subtropical region of China were investigated in order to develop rational cultivation and fertilization management. A small watershed of subtropical region of China was selected for this study. Land uses covered paddy fields, vegetable farming, fruit trees, upland crops, bamboo stands, and forestry. Soil biological and biochemical properties included soil organic C and nutrient contents, mineralization of soil organic C, and soil microbial biomass and community functional diversity. Soil organic C and total N contents, microbial biomass C and N, and respiration intensity under different land uses were changed in the following order: paddy fields (and vegetable farming) 〉 bamboo stands 〉 fruit trccs (and upland). The top surface (0-15 cm) paddy fields (and vegetable farming) were 76.4 and 80.8% higher in soil organic C and total N contents than fruit trees (and upland) soils, respectively. Subsurface paddy soils (15-30 cm) were 59.8 and 67.3% higher in organic C and total N than upland soils, respectively. Soil microbial C, N and respiration intensity in paddy soils (0-15 cm) were 6.36, 3.63 and 3.20 times those in fruit tree (and upland) soils respectively. Soil microbial metabolic quotient was in the order: fruit trees (and upland) 〉 forestry 〉 paddy fields. Metabolic quotient in paddy soils was only 47.7% of that in fruit tree (and upland) soils. Rates of soil organic C mineralization during incubation changed in the order: paddy fields 〉 bamboo stands 〉 fruit trees (and upland) and soil bacteria population: paddy fields 〉 fruit trees (and upland) 〉 forestry. No significant difference was found for fungi and actinomycetes populations. BIOLOG analysis indicated a changing order of paddy fields 〉 fruit trees (and upland) 〉 forestry in values of the average well cell development (AWCD) and functional diversity indexes of microbial community. Results also showed that the conversion from paddy fields to vegetable farming for 5 years resulted in a dramatic increase in soil available phosphorus content while insignificant changes in soil organic C and total N content due to a large inputs of phosphate fertilizers. This conversion caused 53, 41.5, and 41.3% decreases in soil microbial biomass C, N, and respiration intensity, respectively, while 23.6% increase in metabolic quotient and a decrease in soil organic C mineralization rate. Moreover, soil bacteria and actinomycetes populations were increased slightly, while fungi population increased dramatically. Functional diversity indexes of soil microbial community decreased significantly. It was concluded that land uses in the subtropical region of China strongly affected soil biological and biochemical properties. Soil organic C and nutrient contents, mineralization of organic C and functional diversity of microbial community in paddy fields were higher than those in upland and forestry. Overuse of chemical fertilizers in paddy fields with high fertility might degrade soil biological properties and biochemical function, resulting in deterioration of soil biological quality.
基金financially supported by the National Key Research and Development Program of China(2016YFE0101100)the National Natural Science Foundation of China(41771334,41771337 and 31470629)+2 种基金the Youth Innovation Team Project of the Institute of Subtropical Agriculture,Chinese Academy of Sciences(2017QNCXTD_GTD)the Chinese Academy of Sciences Instrument Function Development Project,the Government Program of Competitive Growth of Kazan Federal University and by the “RUDN University program5–100”
文摘The application of straw and biochar is widely practiced for the improvement of soil fertility.However,its impact on microbial functional profiles,particularly with regard to paddy soils,is not well understood.The aim of this study was to investigate the diversity of microbial carbon use patterns in paddy soils amended with straw or straw-derived biochar in a 3-year field experiment in fallow soil and at various development stages of a rice crop(i.e.,tillering and blooming).We applied the community level physiological profiling approach,with 15 substrates(sugars,carboxylic and amino acids,and phenolic acid).In general,straw application resulted in the greatest microbial functional diversity owing to the greater number of available C sources than in control or biochar plots.Biochar amendment promoted the use of α-ketoglutaric acid,the mineralization of which was higher than that of any other substrate.Principal component analyses indicated that microbial functional diversity in the biochar-amended soil was separated from those of the straw-amended and control soils.Redundancy analyses revealed that soil organic carbon content was the most important factor regulating the pattern of microbial carbon utilization.Rhizodeposition and nutrient uptake by rice plants modulated microbial functions in paddy soils and stimulated the microbial use of N-rich substances,such as amino acids.Thus,our results demonstrated that the functional diversity of microorganisms in organic amended paddy soils is affected by both physicochemical properties of amendment and plant growth stage.
基金the National Natural Science Foundation of China (No.40321101)the Ministry of Science and Technology of China (No.2005CB121105) the Knowledge Innovation Program of the Chinese Academy of Sciences(Nos.KZCX1-SW-19 and KZCX2-YW-408).
文摘An experiment with seven N, P, K-fertilizer treatments, i.e., control (no fertilizer), NP, NK, PK, NPK, NP2K, and NPK2 where P2 and K2 indicate double amounts of P and K fertilizers respectively, was conducted to examine the effect of long-term continuous application of chemical fertilizers on microbial biomass and functional diversity of a black soil (Udoll in the USDA Soil Taxonomy) in Northeast China. The soil microbial biomass C ranged between 94 and 145 mg kg-1, with the NK treatment showing a lower biomass; the functional diversity of soil microbial community ranged from 4.13 to 4.25, with an increasing tendency from control to double-fertilizer treatments, and to triple-fertilizer treatments. The soil microbial biomass, and the microbial functional diversity and evenness did not show any significant differences among the different fertilizer treatments including control, suggesting that the long-term application of chemical fertilization would not result in significant changes in the microbial characteristics of the black soil.
基金The National Natural Science Foundation of China as an Outstanding Youth Fund grant (No. 20225722) the National NaturalScience Foundation for the Joint China-Russia Project (No. 20611120015)
文摘Ecological effects of crude oil residues on weed rhizospheres are still vague. The quantitative and diversity changes and metabolic responses of soil-bacterial communities in common dandelion (Taraxacum officinale), jerusalem artichoke (Silphiurn perfoliatum L.) and evening primrose (A colypha australis L.) rhizospheric soils were thus examined using the method of carbon source utilization. The results indicated that there were various toxic effects of crude oil residues on the growth and reproduction of soil bacteria, but the weed rhizospheres could mitigate the toxic effects. Total heterotrophic counting colony-forming units (CFUs) in the rhizospheric soils were significantly higher than those in the non-rhizospheric soils. The culturable soil-bacterial CFUs in the jerusalem artichoke (S. perfoliatum) rhizosphere polluted with 0.50 kg/pot of crude oil residues were almost twice as much as those with 0.25 kg/pot and without the addition of crude oil residues. The addition of crude oil residues increased the difference in substrate evenness, substrate richness, and substrate diversity between non-rhizospheric and rhizospheric soils of T. officinale and A. australis, but there was no significant (p〉0.05) difference in the Shannon's diversity index between non-rhizospheric and rhizospheric soils of S. perfoliatum. The rhizospheric response of weed species to crude oil residues suggested that S. perfoliatum may be a potential weed species for the effective plant-microorganism bioremediation of contaminated soils by crude oil residues.
基金supported by the Major Project of China on New Varieties of GMO Cultivation (2012ZX08011-003 and 2014ZX08011-004B)
文摘With the widespread cultivation of transgenic crops, there is increasing concern about unintended effects of these crops on soil environmental quality. In this study, we used the Biolog method and ELISA to evaluate the possible effects of Osr HSA transgenic rice on soil microbial utilization of carbon substrates under field conditions. There were no significant differences in average well-color development(AWCD) values, Shannon–Wiener diversity index(H), Simpson dominance indices(D) and Shannon–Wiener evenness indices(E) of microbial communities in rhizosphere soils at eight samplings between Osr HSA transgenic rice and its non-transgenic counterpart. The main carbon sources utilized by soil microbes were carbohydrates, carboxylic acids, amino acids and polymers. The types,capacities and patterns of carbon source utilization by microbial communities in rhizosphere soils were similar throughout the detection period. We detected no Osr HSA protein in the roots of Osr HSA transgenic rice. We concluded that Osr HSA transgenic rice and the r HSA protein it produced did not alter the functional diversity of microbial communities in the rhizosphere.
基金This work was supported by the Special Fund for the National Key R&D Programof China(Grant No.2016YFD0201100)National Natural Science Foundation of China(Grant No.31501713)+1 种基金China Agriculture Research System(Grant No.CARS-27)and Taishan Scholar Assistance Program from Shandong Provincial Government.
文摘Soil microbial communities play an essential role in maintaining soil fertility and are considered as ecological indicators to evaluate soil health.In the present study,we examined the influence of almost 4 years of fertilization[no fertilizer(CK),nitrogen alone(N),nitrogen,phosphorus and potassium chemical fertilizer(NPK),organicmanure(M),nitrogen plus organic manure(NM),and NPK plus organic manure(NPKM)]on soil fertility and the functional diversity of soil microbial communities in an apple orchard.Compared to CK,fertilization increased soil organic carbon,total nitrogen,and available nutrients,but reduced soil pH in N and NPK treatments.The highest microbial biomass carbon and nitrogen,most probable number of actinomycetes,bacteria,and fungi occurred in the NPKM treatment.The average well color development(AWCD)values followed the order of NPKM>M>NPK and NM>CK and N.The Shannon index in organic manure treatments were significantly higher than in control and in treatments without organic manure.The principal component analysis showed that manure treatment was significantly separated from other treatments.These results indicated that organic manure applied alone or in combination with chemical fertilizers would increase soil fertility and functional diversity of soil microbial communities.Moreover,applying balanced N,P,K fertilizer in combination with organic manure was found to be superior to the use of a single fertilizer in improving soil microbial community quality.
文摘Knowledge of potential anaerobic soil N mineralization is important for nitrogen fertilizer application. Instead of time-consuming laboratory incubation, we attempt to use pedo-transfer functions (PTFs) approach to get this information. 27 soil samples with various soil depths were collected from paddy field, woodland and tea field in subtropical central China, anaerobically incubated at 35°C for 7 weeks to determine N mineralization, which was fitted by a modified double exponential model with two parameters (the fraction of active N pool (f) and mineralization rate constant (k) for active N pool). The PTFs for parameters were developed from significant soil properties using multiple stepwise regression method. Parameter f (range: 1.59% - 10.4%, mean: 5.2%) was mainly correlated with soil total N (TN), organic C (SOC), sand and silt particle contents (r = -0.59 - 0.69, p k (range: 0.027 - 0.155 d-1, mean: 0.97 d-1) was significantly related to TN, SOC, clay content, C to N ratio and pH (r = -0.6 - 0.71, p f (R2 = 0.72, p TN and pH) for parameter k (R2 = 0.61, p < 0.01). The developed PTFs, integrating various land uses and soil depths, suggest that basic soil properties are helpful for estimation of anaerobic soil N mineralization.
基金supported by the State Key Laboratory of Integrative Sustainable Dryland Agriculture (in preparation)Shanxi Agricultural University, China (202105D121008)+1 种基金the National Natural Science Foundation of China (42007121)the National Key R&D Program of China (2021YFD1900700)。
文摘The yield of winter wheat is hindered by drought and low temperature in the Loess Plateau of China.Two common mulching methods to conserve soil moisture,ridge furrows with plastic film mulching (RP) and flat soil surfaces with plastic film mulching (FP) are helpful for wheat production.Our previous study indicated that FP could improve wheat yield more effectively than RP,but the reason remains unclear.The effect of mulching method on functional bacteria also needs to be further studied.In this study,winter wheat was employed to evaluate the impacts of mulching method on soil temperature,moisture content,microorganisms and grain yield.The results showed that FP had a warming effect when the soil temperature was low and a cooling effect when the temperature was too high.However,the ability to regulate soil temperature in the RP method was unstable and varied with year.The lowest negative accumulated soil temperature was found in the FP treatment,which was 20–89 and 43–99%lower than that of the RP and flat sowing with non-film mulching control (NP) treatments,respectively.Deep soil moisture was better transferred to topsoil for wheat growth in the FP and RP treatments than the NP treatment,which made the topsoil moisture in the two treatments (especially FP) more sufficient than that in the NP treatment during the early growing stage of wheat.However,due to the limited water resources in the study area,there was almost no difference between treatments in topsoil water storage during the later stage.The wheat yield in the FP treatment was significantly higher,by 12–16and 23–56%,respectively,than in the RP and NP treatments.Significant positive correlations were observed among the negative accumulated soil temperature,spike number and wheat yield.The Chao1 and Shannon indices in the RP treatment were 17 and 3.9%higher than those in the NP treatment,respectively.However,according to network relationship analysis,the interspecific relationships of bacteria were weakened in the RP treatment.Phosphorus solubilizing,ammonification and nitrification bacteria were more active in the RP than in the FP treatment,and microbes with nitrate reduction ability and plant pathogens were inhibited in the RP treatment,which improved nutrient availability and habitat for wheat.
基金Under the auspices of China Postdoctoral Science Foundation(No.2022M713130)National Natural Science Foundation of China(No.42101212)Strategic Pilot Science and Technology Project of the Chinese Academy of Sciences(No.XDA28020403)。
文摘As the population continues to shrink in the black soil region of Northeast China since 2000,it is critical to master the impact of population shrinkage on rural functions to realize rural revitalization and sustainable development.In this study,we focused on the impacts of depopulation on the evolution and interrelationship of rural subfunctions.Based on the rural function indexes system,the TOPSIS(Technique for Order Preference by Similarity to an Ideal Solution)method,spatial analysis method,and mathematical statistics analysis method were used to summarize the spatial and temporal characteristics of rural function development,as well as the effect of population shrinkage in the typical black soil region of Northeast China.The results showed that depopulation varied in the extent and duration between the forested region and plain areas,which both impacted the trajectories of rural subfunctions evolution.For the economic development function and ecological conservation function,the effect of continuous slight depopulation was beneficial,while the effect of rapid depopulation was adverse,which was exactly opposite to the agricultural production function.All forms of population shrinkage were conducive to the development of the social security function.With the deepening population shrinkage,depopulation mainly promoted the collaborative development between subfunctions in this study,except the relationship between agricultural production and social security function.But effects of depopulation on the interrelationship of rural subfunctions varied between the forested region and plain areas in some cases.The results provided evidence for the cognition that population shrinkage had complicated effects on rural subfunctions.
基金funded by the National Key Basic Research Special Foundation of China(2021FY100405)the National Natural Science Foundation of China(U20A20114,42201069 and 42077002)the Fundamental Research Funds for Central Non-profit Scientific Institution,China(1610132018012).
文摘Soil temperature regime(STR)is important for soil classification and land use.Generally,STR is delineated by estimating the mean annual soil temperature at a depth of 50 cm(MAST50)according to the Chinese Soil Taxonomy(CST).However,delineating the STR of China remains a challenge due to the difficulties in accurately estimating MAST50.The objectives of this study were to explore environmental factors that influence the spatial variation of MAST50 and generate an STR map for China.Soil temperature measurements at 40 and 80 cm depth were collected from 386 National Meteorological Stations in China during 1971–2000.The MAST50 was calculated as the average mean annual soil temperature(MAST)from 1971–2000 between 40 and 80 cm depths.In addition,2048 mean annual air temperature(MAAT)measurements from 1971 to 2000 were collected from the National Meteorological Stations across China.A zonal pedotransfer function(PTF)was developed based on the ensemble linear regression kriging model to predict the MAST50 in three topographic steps of China.The results showed that MAAT was the most important variable related to the variation of MAST50.The zonal PTF was evaluated with a 10%validation dataset with a mean absolute error(MAE)of 0.66°C and root mean square error(RMSE)of 0.78°C,which were smaller than the unified model with MAE of 0.83°C and RMSE of 0.96°C,respectively.This study demonstrated that the zonal PTF helped improve the accuracy of the predicted MAST50 map.Based on the prediction results,an STR map across China was generated to provide a consistent scientific base for the improvement and application of CST and land use support.
基金supported by the National Key Research and Development Program of China (2016YFC0500905)the National Natural Science Foundation of China (31600584)the Fundamental Research Funds for the Central Universities (2015ZCQSB-02)
文摘To date,much of research on revegetation has focused on soil microorganisms due to their contributions in the formation of soil and soil remediation process.However,little is known about the soil bacteria and their functions respond to the diverse vegetational types in the process of vegetation restoration.Effects of dominated vegetation,i.e.,Artemisia halodendron Turcz Ex Bess,Caragana microphylla Lam.,Hedysarum fruticosum Pall.and Pinus sylvestris L.on bacterial community structures and their potential functions in the Hulun Buir Sandy Land,China were determined using high-throughput 16S rRNA gene sequencing and phylogenetic investigation of communities by reconstruction of unobserved states(PICRUSt)in 2015.Although the dominant phyla of soil bacterial community among different types of vegetation,including Proteobacteria,Actinobacteria,Acidobacteria,Bacteroidetes and Firmicutes,were similar,the relative abundance of these dominant groups significantly differed,indicating that different types of vegetation might result in variations in the composition of soil bacterial community.In addition,functional genes of bacterial populations were similar among different types of vegetation,whereas its relative abundance was significantly differed.Most carbon fixation genes showed a high relative abundance in P.sylvestris,vs.recalcitrant carbon decomposition genes in A.halodendron,suggesting the variations in carbon cycling potential of different types of vegetation.Abundance of assimilatory nitrate reduction genes was the highest in P.sylvestris,vs.dissimilatory nitrate reduction and nitrate reductase genes in A.halodendron,indicating higher nitrogen gasification loss and lower nitrogen utilization gene functions in A.halodendron.The structures and functional genes of soil bacterial community showed marked sensitivities to different plant species,presenting the potentials for regulating soil carbon and nitrogen cycling.
基金funded by the National Natural Science Foundation of China(NSFC31301843)the National Nonprofit Institute Research Grant of Chinese Academy of Agricultural Sciences(IARRP-202-5)
文摘Exploration of soil environmental characteristics governing soil microbial community structure and activity may improve our understanding of biogeochemical processes and soil quality. The impact of soil environmental characteristics especially organic carbon availability after 15-yr different organic and inorganic fertilizer inputs on soil bacterial community structure and functional metabolic diversity of soil microbial communities were evaluated in a 15-yr fertilizer experiment in Changping County, Beijing, China. The experiment was a wheat-maize rotation system which was established in 1991 including four different fertilizer treatments. These treatments included: a non-amended control(CK), a commonly used application rate of inorganic fertilizer treatment(NPK); a commonly used application rate of inorganic fertilizer with swine manure incorporated treatment(NPKM), and a commonly used application rate of inorganic fertilizer with maize straw incorporated treatment(NPKS). Denaturing gradient gel electrophoresis(DGGE) of the 16 S r RNA gene was used to determine the bacterial community structure and single carbon source utilization profiles were determined to characterize the microbial community functional metabolic diversity of different fertilizer treatments using Biolog Eco plates. The results indicated that long-term fertilized treatments significantly increased soil bacterial community structure compared to CK. The use of inorganic fertilizer with organic amendments incorporated for long term(NPKM, NPKS) significantly promoted soil bacterial structure than the application of inorganic fertilizer only(NPK), and NPKM treatment was the most important driver for increases in the soil microbial community richness(S) and structural diversity(H). Overall utilization of carbon sources by soil microbial communities(average well color development, AWCD) and microbial substrate utilization diversity and evenness indices(H' and E) indicated that long-term inorganic fertilizer with organic amendments incorporated(NPKM, NPKS) could significantly stimulate soil microbial metabolic activity and functional diversity relative to CK, while no differences of them were found between NPKS and NPK treatments. Principal component analysis(PCA) based on carbon source utilization profiles also showed significant separation of soil microbial community under long-term fertilization regimes and NPKM treatment was significantly separated from the other three treatments primarily according to the higher microbial utilization of carbohydrates, carboxylic acids, polymers, phenolic compounds, and amino acid, while higher utilization of amines/amides differed soil microbial community in NPKS treatment from those in the other three treatments. Redundancy analysis(RDA) indicated that soil organic carbon(SOC) availability, especially soil microbial biomass carbon(Cmic) and Cmic/SOC ratio are the key factors of soil environmental characteristics contributing to the increase of both soil microbial community structure and functional metabolic diversity in the long-term fertilization trial. Our results showed that long-term inorganic fertilizer and swine manure application could significantly improve soil bacterial community structure and soil microbial metabolic activity through the increases in SOC availability, which could provide insights into the sustainable management of China's soil resource.
文摘In the present study, a biofertilizer on the basis of Streptomyces fumanus gn-2 was used for the treatment of wheat and soybean seeds (dose 104 spore/ml) before planting them in soil with low fertility in order to determine the effect of this biological agent on germination rate;the growth of seedlings, shoots, and the maturation phase of plants;the rhizosphere’s functional biodiversity;and the resistance of these plants to pathogens. Seeds were soaked in the suspension for a period of two or three hours. During the growing season of the crop, no additional fertilizing and spraying of a biopesticide against diseases or pests occurred. Despite the soil having low fertility, low quantities of organic matter, and not having been before used for the cultivation of agricultural plants, this biofertilizer showed a strong stimulatory effect on the growth of seeds and seedlings of wheat and soybeans. The average germination and seed vigor increased by 1.5 - 2.0 times, and the phenophases were accelerated to three to five days. In all phases of vegetation, the ammonifying bacteria in the presence of an antagonist (a biological agent) developed rapidly and were constantly present in significant numbers in the rhizosphere. Streptomyces fumanus introduced into non-sterile soil entered into competition with the local soil microflora and had the ability to colonize the rhizosphere system of plants. The use of a formulation of Streptomyces gn-2 has improved the composition of rhizosphere microflora, attracting saprophytic microorganisms: ammonificators and oligotrophs. The presence of the biocontrol microorganism Streptomyces fumanus in the rhizosphere plays an important role in enhancing the growth and development of useful groups, such as nitrogen-fixing bacteria.
文摘The aim of this study was to test the impact of Rhizophagus irregularis, an arbuscular mycorrhizal fungus (AMF), on durum wheat growth and soil microbial functionalities in a field inoculation trial conducted in Morocco. The results showed that i) the R. irregularis inoculum effectively improved wheat growth, ii) wheat growth promotion depended on the soil mycorrhizal infectivity and iii) functional abilities of soil microflora depended on AMF inoculation. This study confirms that field AMF inoculation can be proposed as an effective agronomic practice in wheat production and as a sustainable cultural practice to manage soil biofunctioning. To fully promote inoculation practices, a better knowledge of AMF ecology has to be acquired to better adapt AMF inoculation to environmental conditions, and thus warrant better yields and agricultural sustainability.
基金the National Natural Science Foundation of China(No.31670494).
文摘The eff ect of seasons on the soil microbiome in a Larix gmelinii forest of Mohe,China,where winter temperatures are generally below−40°C,was evaluated with metagenomics analysis.Taxonomic profi ling using sequencing information revealed that Proteobacteria,Actinobacteria,Acidobacteria and Verrucomicrobia were the dominant phyla in spring,summer,and fall,as were Bradyrhizobium,Chthoniobacter,Streptomyces,Acid Candidatus Koribacter at the genus level.Some species that were abundant in spring and fall greatly diminished in abundance in summer.Clusters of orthologous groups(COG)of proteins,carbohydrate-active enzymes(CAZy),Kyoto Encyclopedia of Genes and Genomes(KEGG)and NCBI databases were used to elucidate the function of diverse proteins and metabolites of the microbial community of L.gmelinii forest.COG analysis showed that fewer genes were detected in spring than in fall and summer,indicating that many soil microbes in the L.gmelinii forest were not tolerant to cold.Based on KEGG analysis,some pathways in the soil microbes were activated in spring and autumn and deactivated in summer.CAZy analysis revealed that most CAZy were more active in summer than in spring or autumn and were severely inhibited in the spring.Many functional pathways,proteins,and CAZy involved in the community changes were concerned with cold or heat resistance.Therefore,the soil in the L.gmelinii forest can be a valuable resource for further research on heat and cold tolerance of soil microbes.
基金Supported by Major Project for Breeding and Cultivation of Novel GM Varieties(2011ZX08012-005,2011ZX08011-002)Dean Fund of Chinese Academy of Agricultural Sciences(201020)
文摘[Objective] This study aimed to investigation the effects of tranagenic Bt + CpTI cotton cultivation on functional diversity of microbial communities in rhizospbere soils. E Method] By using the Biolog method, a comparative study was conducted on the utilization level of single carbon source by microbes in the rhi- zosphere soils of transgenic Bt + CpTI cotton sGK321 and its parental conventional cotton ' Shiyuan 321' at different growth stages. [ Result ] The results showed that, compared with the parental conventional cotton, the average well-color development (AWCD) value of micmhial communities in rhizospbere soils of transgenie Bt + CpTI cotton were significantly higher (P 〈 O. 05) at seedling stage and budding stage while significantly lower at flower and boll stage and bell opening stage. Shannon-Wiener diversity index (H) and Simpson dominance index (D) of microbial communities in rhlzesphere soils of transgenic cotton and conventional cotton varied with the different growth stages, whereas the Shannon-Wiener evenness index (E) showed no significant difference between transgenie cotton and convention- al cotton at four growth stages. Principal component analysis indicated that the patterns of carbon source utilization by microbial communities in rhizospbere soils were similar among transgenic cotton at seeding stage and flower and boll stage and parental conventional cotton at seeding stage and budding stage, which were also similar between tranagenic cotton at budding stage and parental conventional cotton at flower and boll stage. [ Conclusion] Analysis of different carbon sources indi- cated that the main carbon sources utilized by soil microbes were carbohydrates, amino acids, carboxylie acids and polymers.
基金Supported by the Special Fund for Agro-Scientific Research in the Public Interest of China(200903031)the Project of Science and Technology Department of Jilin Province(20070413)
文摘To improve the serious situation of soil degradation in China, tests were carried out to study the improvement effects of Russian Melilotus officinalis on the low base saturation acid soil, the alkaline-saline soil and the heavy metal contaminated soil. The results showed that M. officinalis could improve the low base saturation acid soil, increase the salt, alkali content, mineral nutrition and organic nutrient, which indicated that M. officinalis could be planted in the acid soil, and had a significant ecological effect on soil improvement. M. officinalis achieved a remarkable effect on improving the alkaline-saline soil (pH 8.5-9.5) that the soil desalted, dealkalized and had more organic nutrient. Moreover, M. officinalis could improve the heavy metal contaminated soil and had the ability to enrich and transform heavy metal elements, especially Cd and Ni, thereby presenting significant repair effects on soil improvement. Therefore, Russian M. officinalis had multiple-effects on degraded soil improvement, so it is worthy of application and popularization.
基金supported by the National Natural Science Foundation of China (Project No. 40201026)the State Key Basic Research and Development Plan of China (No. 2002CB410804)
文摘To assess the effects of single and combined pollution of cadmium (Cd) and mercury (Hg) on soil micro-bial community structural and functional diversities, an incubation experiment was conducted, by employing two soils, namely, the marine sediment silty loam soil and the yellowish-red soil, in which five levels of Cd, Hg and Cd and Hg in combination were added. After being incubated for 56 days, the phospholipid fatty acids (PLFAs) profile and sole carbon source utilization pattern (BIOLOG) of the samples were tested. The results showed that the compo-sition of the microbial communities changed significantly at different levels of metals application. The principal component analyses (PCA) of PLFAs indicated that the structure of the microbial community was also significantly altered with increasing levels of metals, with increasing PLFAs biomarkers for fungi and actinomycetes, and in-creasing ratio of Gram-positive to Gram-negative bacteria. Sole carbon source utilization pattern analysis revealed that single and combined application of Cd and Hg inhibited significantly the functional activity of soil microorgan-isms, the functional diversity indices [Richness (S), Shannon-Wiener indices (H) and Evenness (EH)] were signifi-cantly lower in polluted soils than those in non-polluted soils, which also significantly altered with increasing levels of metals. PCA for the sole carbon source utilization pattern also indicated that the metal contamination could result in a variable soil microbial community. The results revealed that the combination of Cd and Hg had higher toxicity to soil microbial community structural and functional diversities than the individual application of Cd or Hg.