Responses of plant diversity and soil microorganism diversity to nitrogen addition in the desert steppe,China

Nitrogen(N)deposition is a significant aspect of global change and poses a threat to terrestrial biodiversity.The impact of plant-soil microbe relationships to N deposition has recently attracted considerable attention.Soil microorganisms have been proven to provide nutrients for specific plant growth,especially in nutrient-poor desert steppe ecosystems.However,the effects of N deposition on plant-soil microbial community interactions in such ecosystems remain poorly understood.To investigate these effects,we conducted a 6-year N-addition field experiment in a Stipa breviflora Griseb.desert steppe in Inner Mongolia Autonomous Region,China.Four N treatment levels(N0,N30,N50,and N100,corresponding to 0,30,50,and 100 kg N/(hm2•a),respectively)were applied to simulate atmospheric N deposition.The results showed that N deposition did not significantly affect the aboveground biomass of desert steppe plants.N deposition did not significantly reduce the alfa-diversity of plant and microbial communities in the desert steppe,and low and mediate N additions(N30 and N50)had a promoting effect on them.The variation pattern of plant Shannon index was consistent with that of the soil bacterial Chao1 index.N deposition significantly affected the beta-diversity of plants and soil bacteria,but did not significantly affect fungal communities.In conclusion,N deposition led to co-evolution between desert steppe plants and soil bacterial communities,while fungal communities exhibited strong stability and did not undergo significant changes.These findings help clarify atmospheric N deposition effects on the ecological health and function of the desert steppe.

The Combination of Achnatherum inebrians Extracts and Soil Microorganisms Inhibited Seed Germination and Seedling Growth in Elymus nutans

In a greenhouse experiment,the effects of soil microorganisms and extracts of Achnatherum inebrians on the seed germination and seedling growth of Elymus nutans were studied.The results showed that both the extracts from aboveground and belowground parts of A.inebrians significantly inhibited the germination rate,germination potential,germination index,vigor index,seedling height,root length,and fresh weight of E.nutans,but increased malondialdehyde content,catalase,peroxidase and superoxide dismutase activity of E.nutans seedlings(p<0.05).The allelopathy of aqueous extracts of the aboveground parts of A.inebrians was stronger than that of the pre-cipitates.Aqueous extracts of the aboveground parts of A.inebrians decreased seed germination rate,germination potential,germination index,vigor index,seedling length,root length,and seedling fresh weight by 10.45%-74.63%,24.18%-32.50%,19.03%-73.36%,37.83%-88.41%,21.42%-53.14%,2.65%-40.21%,and 20.45%-61.36%,respectively,and malondialdehyde content,peroxidase,catalase,and superoxide dismutase activity increased by 8.09%-62.24%,27.83%-86.47%,22.90%-93.17%,and 11.15%-75.91%,respectively.The above indexes were higher in live soil than in sterilized soil.Soil microorganisms increased the allelopathy of A.inebrians.The seed germination rate,germination potential,germination index,vigor index,seedling length,and seedling fresh weight of E.nutans planted in live soil decreased by 8.22%-48.48%,10.00%-51.85%,8.19%-53.26%,16.43%-60.03%,12.91%-28.81%,and 9.09%-22.86%compared with sterilized soil,respectively.Malondialdehyde content,peroxidase,catalase,and superoxide dismutase activity of E.nutans planted in live soil increased by 53.91%-81.06%,15.71%-57.34%,33.33%-86.31%,and 9.78%-52.51%compared with sterilized soil,respectively.The existence of soil microorganisms enhanced the allelopathy of the secondary metabolites of A.inebrians.A combination of microorganisms and aqueous extracts from the aboveground parts of A.inebrians had the strongest allelopathic effect on E.nutans.

Effect of salinization on soil properties and mechanisms beneficial to microorganisms in salinized soil remediation-a review

Salinized soil is an important reserved arable land resource in China.The management and utilization of salinized soil can safeguard the current size of arable land and a stable grain yield.Salt accumulation will lead to the deterioration of soil properties,destroy soil production potential and damage soil ecological functions,which in turn will threaten global water and soil resources and food security,and affect sustainable socio-economic development.Microorganisms are important components of salinized soil.Microbial remediation is an important research tool in improving salinized soil and is key to realizing sustainable development of agriculture and the ecosystem.Knowledge about the impact of salinization on soil properties and measures using microorganisms in remediation of salinized soil has grown over time.However,the mechanisms governing these impacts and the ecological principles for microbial remediation are scarce.Thus,it is imperative to summarize the effects of salinization on soil physical,chemical,and microbial properties,and then review the related mechanisms of halophilic and halotolerant microorganisms in salinized soil remediation via direct and indirect pathways.The stability,persistence,and safety of the microbial remediation effect is also highlighted in this review to further promote the application of microbial remediation in salinized soil.The objective of this review is to provide reference and theoretical support for the improvement and utilization of salinized soil.

Bibliometric analysis of soil phosphate solubilizing microorganisms research using VOSviewer

Phosphorus-solubilizing microbes play key roles in improving phosphorus availability and in alleviating phosphorus nutrient limitation in soils. However, we did not have a comprehensive understanding of the overall research progress and development trend of phosphorus solubilizing microorganisms. In this study, we obtain documents from the Web of Science (WOS) core collection between 2002 and 2022, and a comprehensive review of the progress of global research on soil phosphate solubilizing microorganisms was conducted by using the VOSviewer bibliometric analysis tool. The results showed an increasing trend in the number of published articles from 2002 to 2022. India, accounting for 28% of the total number of published articles, became the most productive country. However, Canada was the country with the highest average citation frequency of articles. Chinese Academy of Sciences (CAS) was the greatest contributor with the most publications. Among the published journals, Frontiers in Microbiology, Applied Soil Ecology and Plant and Soil were the top three core journals in this field. Based on the keyword analysis, the assessment of the mechanisms between phosphorus solubilizing microbes and the soil carbon cycles with the different management practices became the new research trend among the scientific communities. These findings would provide an important reference value for future in-depth research on soil phosphate solubilizing microorganisms.

Advancing healthcare through laboratory on a chip technology:Transforming microorganism identification and diagnostics

In a recent case report in the World Journal of Clinical Cases,emphasized the crucial role of rapidly and accurately identifying pathogens to optimize patient treatment outcomes.Laboratory-on-a-chip(LOC)technology has emerged as a transformative tool in health care,offering rapid,sensitive,and specific identification of microorganisms.This editorial provides a comprehensive overview of LOC technology,highlighting its principles,advantages,applications,challenges,and future directions.Success studies from the field have demonstrated the practical benefits of LOC devices in clinical diagnostics,epidemiology,and food safety.Comparative studies have underscored the superiority of LOC technology over traditional methods,showcasing improvements in speed,accuracy,and portability.The future integration of LOC with biosensors,artificial intelligence,and data analytics promises further innovation and expansion.This call to action emphasizes the importance of continued research,investment,and adoption to realize the full potential of LOC technology in improving healthcare outcomes worldwide.

Bioturbation Effects of Benthic Fish on Soil Microorganism of Paddy Field

[Objective]The research aimed to explore the bioturbation effects of benthic fish Misgurnus anguillicaudatus on soil microorganism（microflora,biomass,and special physiological groups） of paddy field.[Method]The experiments were conducted locally and quantitatively in field,using plate count and MPN methods.[Result]In the microflora of paddy soil tested,the quantity of bacteria is the largest,followed by actinomycetes and fungus.Compared with the control paddy fields,in rice-fish paddy fields the quantities of bacteria,actinomycetes and fungus were higher,at significance level P 〈0.05,P 〈0.01,and P 〈0.01 respectively.The microbial biomass C and N in rice-fish paddy fields is remarkably higher than those in control paddy fields,both at significance level P 〈0.01;the microbial biomass P in rice-fish paddy fields is higher than that in control paddy fields,but at significance level P 〈0.05.Benthic fish promotes the growth of soil azotobacter,cellulolytic bacteria,nitrobacteria,sulfur bacteria,and ammonifying bacteria,restricts the reproduction of nitrate reducing bacteria and sulfate reducing bacteria.[Conclusion]The benthic fish had important effects on microflora,microbial biomass,and special microorganism physiological groups of paddy soil,improves the living conditions of soil microorganisms,promotes the soil fertility and bio-chemical activity,which is beneficial for improving the supply ability of soil nutrients such as N,P,S,as well as the efficiency of nutrient utilization.

Dynamic of Soil Microorganisms from Root Region of Ginseng with Different Growing Years

Objective To see the dynamic of fungi, bacilli and actinomyces communities from root region of ginseng with different growing years.Method With ginseng root region soils from several sampling sites of Jilin Province as materials, concentrations of fungi, bacilli and antinomyces were evaluated by spread-plate method. Result Though there are differences on statistic data among soil samples, commonly with the increasing of growing years, concentration of fungi in ginseng root region increased, which were on the contrary for bacilli and antinomyces, and bacilli changed even more significant than antinomyces. Conclusion Concentrations of soil microorganisms can be influenced by soil type, planting mode and growing years simultaneously, but growing years influenced even more significantly.

Impact of Transgenic Bt+CpTI Cotton on Soil Enzyme Activities and Soil Microorganisms

Due to its strong and effective insecticidal properties, transgenic Bt＋CpTI cotton has witnessed an expanding planting area in recent years, and the impact of its cultivation on soil ecosystem becomes an important part of environmental risk assessment. Using transgenic Bt＋CpTI cotton sGK321 and its parental homologous conventional cotton Shiyuan 321 as the study objects, a comparative analysis was conducted on the changes in enzyme activities （urease, alkaline phosphatase, and catalase） of the rhizosphere soil and changes in the number of culturable microor-ganisms （bacteria, fungi, and actinomycetes） at different growth stages （seedling stage, budding stage, flower and bol stage, and bol opening stage） of sGK321 and Shiyuan 321 under the condition of 13 years field plantings. The results showed that, the populations of bacteria, fungi, and actinomycete and the soil enzyme activi-ties of urease, alkaline phosphatase and catalase had a similar variation trend along with the cotton growing process for transgenic cotton and conventional cotton. Some occasional and inconsistent effects on soil enzyme activities and soil fungi composi-tion in the rhizosphere soil of transgenic Bt＋CpTI cotton were found at the seedling stage, budding stage, flower and bol stage as compared with that of conventional cotton. The amount of bacteria and actinomycetes were not significantly different during a certain stage; however, the activities of urease, catalase, alkaline phos-phatase, also with the number of fungi were significantly different, e.g. the urease activities at seedling stage, the alkaline phosphatase at seedling and budding stages, and the soil culturable fungi at flower and bol stage were less than that of conven-tional cotton, while the soil alkaline phosphatase activities at flower and bol stage were higher. Cluster analysis showed that soil enzyme activities and microbial popu-lation changed mainly along the growth processes, suffering little from the planting of transgenic Bt＋CpTI cotton.

Bioactive Characteristics of Soil Microorganisms in Different-aged Orange (Citrus reticulate) Plantations

[Objective] The paper was to study the bioactive characteristics of soil microorganisms in different-aged orange plantations. [Method] Taking 010 cm deep soil in 3 orange plantations with different planting years in suburb of Yichang City as the test object, the variation rule of total organic carbon, total nitrogen, soil pH value, microbial biomass carbon, microbial biomass nitrogen, number of 3 main types of soil microbial flora, basal respiration, microbial entropy and metabolic entropy in differentaged orange plantations was studied. [Result] With the increase of planting years, the soil acidification of different-aged orange plantations was aggravating; total organic carbon and total nitrogen content increased first and then decreased; the total number of soil microorganism showed a downtrend, of which the number of bacteria decreased significantly, the number of actinomycetes had small changes, the number of fungi increased significantly, and the ratio of bacteria and fungi in soil （B/F） showed a decreasing trend. Soil microbial biomass carbon was fluctuated within a small range, whereas soil microbial biomass nitrogen decreased significantly; soil microbial entropy decreased significantly, and metabolic entropy showed an increasing trend. This indicated that the decrease of soil pH value affected the changes of soil microbial flora, microbial activity, microbial biomass carbon and nitrogen and soil major nutrients, and further affected the normal exertion of soil function. [Conclusion] The study explores soil nutrient characteristics and changes of microbial flora in test area, which will provide scientific basis for further study on orchard soil and orchard management.

Effects of Cadmium Contamination on Sugarcane Growth, Soil Microorganism and Soil Enzyme Activity

[Objective] To provide a reference for exploring the relationship between Cd contamination and sugarcane growth and between Cd contamination and micro- bial properties of soil, the effects of adding different concentrations of exogenous cadmium （Cd） on the growth of sugarcane, the quantities of soil microorganisms and the activity of soil enzymes were studied. [Method] The plant height, stem di- ameter and cane yield of sugarcane, the soil microbial quantities and enzyme activi- ties were determined by using sugarcane as a material treated with different Cd concentrations （0, 25, 50, 100, 250 and 500 mg/kg） under potted conditions. IRe- suit] The results showed that the plant height, stem diameter and the yield of sug- arcane decreased with the increase of Cd concentration in the soil, and the higher the Cd concentration, the more obvious the inhibitory effect. The Cd contamination changed the enzyme activity, and the activities of urease and acid phosphatase sig- nificantly decreased with the increase of Cd concentration, especially when the Cd concentration reached 100 mg/kg. The sensitivity of the two soil enzymes to Cd ranked as urease〉acid phosphatase. Cd contamination also changed soil microbial quantities. Fungi, bacteria and actinomycetes significantly decreased at the Cd con- centration level of 100 mg/kg. There were significant and highly significant correla- tions between Cd contamination concentration and fungi, bacteria and actinomycetes, the activities of urease and acid phosphatase, plant height, stem diameter as well as cane yield. [Conclusion] Under the conditions of potted planted sugarcane, ex- ogenous Cd contamination affected the growth of sugarcane, the quantities of soil microorclanisms and soil enzyme activities to different degrees.

Heavy metal availability and impact on activity of soil microorganisms along a Cu/Zn contamination gradient

All the regulations that define a maximum concentration of metals in the receiving soil are based on total soil metal concentration. However, the potential toxicity of a heavy metal in the soil depends on its speciation and availability. We studied the effects of heavy metal speciation and availability on soil microorganism activities along a Cu/Zn contamination gradient. Microbial biomass and enzyme activity of soil contaminated with both Cu and Zn were investigated. The results showed that microbial biomass was negatively affected by the elevated metal levels. The microbial biomass-C （Cmic）/organic C （Corg） ratio was closely correlated to heavy metal stress. There were negative correlations between soil microbial biomass, phosphatase activity and NH4NO3 extractable heavy metals. The soil microorganism activity could be predicted using empirical models with the availability of Cu and Zn. We observed that 72% of the variation in phosphatase activity could be explained by the NH4NO3-extractable and total heavy metal concentration. By considering different monitoring approaches and different viewpoints, this set of methods applied in this study seemed sensitive to site differences and contributed to a better understanding of the effects of heavy metals on the size and activity of microorganisms in soils. The data presented demonstrate the relationship between heavy metals availability and heavy metal toxicity to soil microorganism along a contamination gradient.

Studies on nutrient uptake of rice and characteristics of soil microorganisms in a long-term fertilization experiments for irrigated rice

The ecosystem characteristics of soil microorganism and the nutrient uptake of irrigated rice were investigated in a split-block experiment with different fertilization treatments, including control (no fertilizer application), PK, NK, NP, NPK fertilization, in the main block, and conventional rice and hybrid rice comparison, in the sub block. Average data of five treatments in five years indicated that the indigenous N supply (INS) capacity ranged from 32.72 to 93.21 kg/ha; that indigenous P supply (IPS)capacity ranged from 7.42 to 32.25 kg/ha; and that indigenous K supply (IKS) capacity ranged from 16.24 to 140.51 kg/ha, which showed that soil available nutrient pool depletion might occur very fast and that P, K deficiency has become a constraint to increasing yields of consecutive crops grown without fertilizer application. It was found that soil nutrient deficiency and unbalanced fertilization to rice crop had negative effect on the diversity of the microbial community and total microbial biomass in the soil.The long-term fertilizer experiment (LTFE) also showed that balanced application of N, P and K promoted microbial biomass growth and improvement of community composition. Unbalanced fertilization reduced microbial N and increased C/N ratio of the microbial biomass. Compared with inbred rice, hybrid rice behavior is characterized by physiological advantage in nutrient uptake and lower internal K use efficiency.

Ecological effects of crude oil residues on the functional diversity of soil microorganisms in three weed rhizospheres

Ecological effects of crude oil residues on weed rhizospheres are still vague. The quantitative and diversity changes and metabolic responses of soil-bacterial communities in common dandelion （Taraxacum officinale）, jerusalem artichoke （Silphiurn perfoliatum L.） and evening primrose （A colypha australis L.） rhizospheric soils were thus examined using the method of carbon source utilization. The results indicated that there were various toxic effects of crude oil residues on the growth and reproduction of soil bacteria, but the weed rhizospheres could mitigate the toxic effects. Total heterotrophic counting colony-forming units （CFUs） in the rhizospheric soils were significantly higher than those in the non-rhizospheric soils. The culturable soil-bacterial CFUs in the jerusalem artichoke （S. perfoliatum） rhizosphere polluted with 0.50 kg/pot of crude oil residues were almost twice as much as those with 0.25 kg/pot and without the addition of crude oil residues. The addition of crude oil residues increased the difference in substrate evenness, substrate richness, and substrate diversity between non-rhizospheric and rhizospheric soils of T. officinale and A. australis, but there was no significant （p〉0.05） difference in the Shannon＇s diversity index between non-rhizospheric and rhizospheric soils of S. perfoliatum. The rhizospheric response of weed species to crude oil residues suggested that S. perfoliatum may be a potential weed species for the effective plant-microorganism bioremediation of contaminated soils by crude oil residues.

Influences of Quinclorac on Culturable Microorganisms and Soil Respiration in Flooded Paddy Soil

Objective To investigate the potential effects of herbicide quinclorac (3,7-dichloro-8-quinoline-carboxylic) on the culturable microorganisms in flooded paddy soil. Methods Total soil aerobic bacteria, actinomycetes and fungi were counted by a 10-fold serial dilution plate technique. Numbers of anaerobic fermentative bacteria (AFB), denitrifying bacteria (DNB) and hydrogen-producing acetogenic bacteria (HPAB) were numerated by three-tube anaerobic most-probable-number (MPN) methods with anaerobic liquid enrichment media. The number of methanogenic bacteria (MB) and nitrogen-fixing bacteria (NFB) was determined by the rolling tube method in triplicate. Soil respiration was monitored by a 102G-type gas chromatography with a stainless steel column filled with GDX-104 and a thermal conductivity detector. Results Quinclorac concentration was an important factor affecting the populations of various culturable microorganisms. There were some significant differences in the aerobic heterotrophic bacteria. AFB and DNB between soils were supplemented with quinclorac and non-quinclorac at the early stage of incubation, but none of them was persistent. The number of fungi and DNB was increased in soil samples treated by lower than 1.33μg·g-1 dried soil, while the CFU of fungi and HPAB was inhibited in soil samples treated by higher than 1.33μg·g-1 dried soil. The population of actinomycete declined in negative proportion to the concentrations of quinclorac applied after 4 days. However, application of quinclorac greatly stimulated the growth of AFB and NFB. MB was more sensitive to quinclorac than the others, and the three soil samples with concentrations higher than 1 μg·g-1 dried soil declined significantly to less than 40% of that in the control, but the number of samples with lower concentrations of quinclorac was nearly equal to that in the control at the end of experiments. Conclusion Quinclorac is safe to the soil microorganisms when applied at normal concentrations (0.67μg·g-1).

Effect of Lanthanum on Quantity of Major Microorganism Groups in Yellow Cinnamon Soil

Different accumulations of La in yellow cinnamon soil were simulated as results of long term application of rare earth elements and dosage response curves of three major soil microorganism groups and three physiological groups were obtained. La accumulated from 5%～50% of adsorption capacity(ADC) had inhibitory effects on the total number of bacteria in soil. La accumulated below 30% ADC stimulated the growth of actinomycetes with the highest effect at 20% ADC. The total number of fungi was strongly stimulated by La up to 50% ADC with the highest effect at 30% ADC. The aerobic cellulolytic bacteria and celluloloytic fungi were stimulated by La below 10% ADC and up to 50% ADC, respectively. La above 10% ADC had very strong inhibitory effects on soil ammonifiers.

Effects of Combination of Straw Returning and a Microbial Agent on Microorganisms and Enzyme Activity in Rhizosphere Soil and Yield of Late Rice

By using red soil and late rice Wufengyou T025 as the tested materials,the influences of straw returning with a microbial agent on the quantity of microorganisms and enzyme activity in rhizosphere soil in fields were studied,and soil productivity was tested with yield and agricultural traits of late rice. The results showed that straw returning with the microbial agent could significantly improve the quantity of bacteria,fungi and actinomyces in soil,enhance the activity of sucrase,urease,catalase and cellulase,and improve the number of grains per spike,setting percentage,thousand seed weight and yield of late rice. The combination of rice straw returning and the microbial agent has a good prospect of application.

Comparisons of extraction and purification methods of soil microorganism DNA from rhizosphere soil

Microorganism DNA of rhizosphere soil from Pinus koraiensis and Pinus sylvestriformis were extracted by proteinase K based on SDS method, CTAB method, PVP （polyvinylpolypyrrolidone） method, and freezing and thawing method and the crude DNA from rhizosphere soil were purified by dialysis method, silver beads absorption method, and squeezing DNA gel method. The results of different extracting and purifying methods were compared and evaluated. Results indicated that the best method of extraction for microorganism DNA in rhizosphere soil was proteinse K based on SDS method with high salt concentration of 1.0% （w/v） NaCl, which could effectively eliminate humic acids and other impurities. The dialysis method was suitable to purify DNA from rhizosphere soil because of effectively removing brown matters and humic acids and the purified products were suited to PCR amplification. Squeezing DNA gel method was also a good purification method with the advantage of inexpensive in cost and efficient in use.

Influences of Oyster Shell Soil Conditioner on Soil and Plant Rhizospheric Microorganisms

Oyster shell soil conditioner had significant influence on soil and rhizospheric microorganisms in their biomass,respiratory intensity and nutritional requirement. It could stimulate growth of soil and rhizospheric microorganisms, especially nitrogen-fixers, and intensify soil respiration in proportion to the dose and fertilizing time of the conditioner, leading to the increase in the number of nitrogen fixing bacteria and the decrease in the number of bacteria with special nutrition demands.

Cr(Ⅵ) reduction in chromium-contaminated soil by indigenous microorganisms under aerobic condition

Bioremediation plays an increasingly important role in the remediation of chromium-contaminated soil because it is an environmentally friendly technology. To investigate the Cr(Ⅵ)reduction process by indigenous microorganisms in soil, a batch of incubation experiments were carried out in a bioreactor under aerobic conditions. The results showed that in the presence of indigenous microorganisms, the Cr(Ⅵ) concentration in the chromium-contaminated soil decreased from 1521.9 to 199.2 mg/kg within 66 h with culture medium addition, while a slight decrease in the Cr(Ⅵ) concentration was found in the sterilized soil,implying that the indigenous microorganisms contributed to the Cr(Ⅵ) reduction. In the microbial remediation process, Cr(Ⅵ)microbial reduction occurred after the reduction of NO3-, Mn4+ and Fe3+ and,before SO42- reduction. The reduction process of Cr(Ⅵ) can be divided into two phases, characterized by the exponential equation model of microbial reduction and the linear equation model of the combined effect of the major ions. It can be concluded that indigenous Cr(Ⅵ)-reducing bacteria have a potential application for in-situ remediation of Cr(Ⅵ)-contaminated soil.

Degradation of Bioplastics in Soil and Their Degradation Effects on Environmental Microorganisms

Degradation of three kinds of bioplastics and their effects on microbial biomass and microbial diversity in soil environment were analyzed. The degradation rate of bioplastic in soil was closely related to the main components in the bioplastics. Poly (butylene succinate)-starch (PBS-starch) and poly (butylene succinate) (PBS) were degraded by 1% to 7% after 28 days in a soil with an initial bacterial biomass of 1.4 × 109 cells/g-soil, however poly lactic acid (PLA) was not degraded in the soil after 28 days. When the powdered-bioplastics were examined for the degradation in the soil, PBS-starch also showed the highest degradability (24.4% degradation after 28 days), and the similar results were obtained in the case of long-term degradation experiment (2 years). To investigate the effect of bacterial biomass in soil on biodegradability of bioplastics, PBS-starch was buried in three kinds of soils differing in bacterial biomass (7.5 × 106, 7.5 × 107, and 7.5 × 108 cells/g-soil). The rate of bioplastic degradation was enhanced accompanied with an increase of the bacterial biomass in soil. 16S rDNA PCR-DGGE analysis indicated that the bacterial diversity in the soil was not affected by the degradation of bioplastics. Moreover, the degradation of bioplastic did not affect the nitrogen circulation activity in the soil.