Species abundance distribution models of Toona ciliata communities in Hubei Province,China

The study of plant species abundance distribution(SAD)in natural communities is of considerable importance to understand the processes and ecological rules of community assembly.With the distribution of tree,shrub and herb layers of eight natural communities of Toona ciliata as research targets,three diff erent ecological niche models were used:broken stick model,overlapping niche model and niche preemption model,as well as three statistical models:log-series distribution model,log-normal distribution model and Weibull distribution model,to fi t SAD of the diff erent vegetation layers based on data collected.Goodness-of-fi t was compared with Chi square test,Kolmogorov–Smirnov(K–S)test and Akaike Information Criterion(AIC).The results show:(1)based on the criteria of the lowest AIC value,Chi square value and K–S value with no signifi cant diff erence(p>0.05)between theoretic and observed SADs.The suitability and goodness-of-fi t of the broken stick model was the best of three ecological niche models.The log-series distribution model did not accept the fi tted results of most vegetation layers and had the lowest goodness-of-fi t.The Weibull distribution model had the best goodness-of-fi t for SADs.Overall,the statistical SADs performed better than the ecological ones.(2)T.ciliata was the dominant species in all the communities;species richness and diversity of herbs were the highest of the vegetation layers,while the diversities of the tree layers were slightly higher than the shrub layers;there were fewer common species and more rare species in the eight communities.The herb layers had the highest community evenness,followed by the shrub and the tree layers.Due to the complexity and habitat diversity of the diff erent T.ciliata communities,comprehensive analyses of a variety of SADs and tests for optimal models together with management,are practical steps to enhance understanding of ecological processes and mechanisms of T.ciliata communities,to detect disturbances,and to facilitate biodiversity and species conservation.

Contemporary Asymmetric Genetic Introgression Between Two Pelophylax Species in Shanghai

Human disturbances are considered to break reproduction barriers among species.Significant increases in hybridization events have been reported among a large number of taxonomic groups in anthropogenic environments,providing novel insights into species evolution mechanisms and conservation management in the Anthropocene.The Eastern Golden Frog(Pelophylax plancyi)and BlackSpotted Frog(P.nigromaculatus)are two sympatric anuran species with a long history of mitochondrial genome introgression in highly urbanized continental East Asia.However,there is only limited understanding of the pattern of their contemporary hybridization and factors influencing their interspecific relationship under anthropogenic disturbances.Here,interspecific hybridization between P.plancyi and P.nigromaculatus at the population level was investigated in Shanghai.All except two haplotypes obtained from both species in Shanghai were mixed together,and located in the introgression clade,implying multiple ancient mitochondrial introgression events occurred in the populations of our study area.Asymmetric genetic introgression was detected by microsatellite markers,with 0.7%of P.plancyi and 14.6%of P.nigromaculatus identified as contemporary admixed individuals.Consistent with the trend of population density,higher genetic diversity of neutral microsatellite loci was found in the more abundant P.plancyi;however,variation in mitochondrial(Cyt-b)and nuclear(POMC)genes was higher in relatively rare P.nigromaculatus.The population density of P.plancyi and number of water patches within local habitats were significantly positively correlated with both occurrences and proportions of admixed individuals in the populations of P.plancyi and P.nigromaculatus.Considering the prevalent transformation of habitats in urbanized areas,these results imply that a high population density in isolated artificially altered habitats is likely to increase interspecific hybridization.Thus,population monitoring and improvement of landscape connectivity between habitats would be needed to control the intensity of interspecific hybridization between P.plancyi and P.nigromaculatus in anthropogenic-disturbed environments.

Species Abundance in a Forest Community in South China：A Case of Poisson Lognormal Distribution

Case studies on Poisson lognormal distribution of species abundance have been rare, especially in forest communities. We propose a numerical method to fit the Poisson lognormal to the species abundance data at an evergreen mixed forest in the Dinghushan Biosphere Reserve, South China. Plants in the tree, shrub and herb layers in 25 quadrats of 20 m× 20 m, 5 m× 5 m, and 1 m× 1 m were surveyed. Results indicated that: (i) for each layer, the observed species abundance with a similarly small median, mode, and a variance larger than the mean was reverse J-shaped and followed well the zero-truncated Poisson lognormal; (ii) the coefficient of variation, skewness and kurtosis of abundance, and two Poisson lognormal parameters (& and μ) for shrub layer were closer to those for the herb layer than those for the tree layer; and (iii) from the tree to the shrub to the herb layer, the α and the coefficient of variation decreased, whereas diversity increased. We suggest that: (i) the species abundance distributions in the three layers reflects the overall community characteristics; (ii) the Poisson lognormal can describe the species abundance distribution in diverse communities with a few abundant species but many rare species; and (iii) 1/α should be an alternative measure of diversity.

Assessing Forest Cover Distribution, Species Diversity, and Richness of the Buffer Zone for Strategic Forest Management Planning for Nimule National Park, South Sudan

Natural forest ecosystems play an essential role in the conservation of biodiversity of many plants and animals by providing them with habitat and suitable environments. Studies have shown that biodiversity-protected areas reduce the loss and degradation of natural habitats to various wild species of plants. This study examined the forest resources in five subzones by conducting tree/shrub species inventory to be able to develop an effective forest management plan for the Buffer Zone Forest Reserve for the sustainable conservation of flora and fauna of Nimule National Park. This is with the view to identify the main tree and shrub species;assess the composition, distribution, and abundance of various tree/shrub species;to determine the species diversity as well as the richness of these areas in terms of growth and performance where DBH and heights of trees/shrubs in the circular sample plots were measured. The results revealed the overall mean DBH and H of 13.83 cm and 6.61 m respectively. The highest number of trees was obtained in subzone B followed by D, while the least were found in subzone A. The overall mean tree/shrub density was 0.83 tons/ha. The mean total basal area and volume per hectare were 3252.74 m2/ha and 46,540.82 m3/ha respectively. The overall species abundance and distribution indicate Combretum spp, Cedrella spp., Grewia mollis, Acacia Sieberiana, Ziziphus abysinica, and Acacia seyal were the most dominant species, with over 12 species richness at the deposition side of the River Nile, 13 species at the western side of the Nile, the Administration site shows only 7 species, the lowland of Mt. Gordon show over 14 different species, whereas over 10 species were found on the top of Mt. Gordon. The overall mean diversity indices and evenness of H’, D, and E depicted 2.507, 0.871, and 0.840 respectively. These results yielded are relatively moderate. Therefore, conservation efforts are very necessary to improve and maintain the quality of vegetation cover.

Native Species Composition and Diversity of Valuable Woody Plants Regeneration during Fallow Period in Kamwatta, Moruca, Guyana

An intelligent method of shifting cultivation to regenerate vegetation after a long fallow period is critical information for restoration strategies. The literature review identified that the assessment of woody plant species on abandoned farmland has never been done before in Kamwatta, Moruca Region 1. In addition, more information should be available in indigenous communities and at the national level, including more documentation of the utilization of natural resources by the Warrau community. This study assessed the valuable woody plant species that grew during the fallow periods. Nine farmlands were randomly selected along a 100 m transect, each with varying fallow periods. In order to collect information on the age of farm abandonment, the researcher employed a mixed-methods approach. First, we found how long each farm had been fallow by administering a semi-structured questionnaire. Then, we conducted a flora survey to gain information on the variety and abundance of valuable plants using the age of farm abandonment as a dependent variable. The data analysis included the number of valuable woody trees with a diameter of >10 cm, seedlings and saplings with a diameter of <10 cm, the location of identified trees, and the uses of identified tree species. Microsoft Excel was used to code and analyze the questionnaire, while QGIS, Shannon’s Index of Diversity, and Simple Linear Regression were used to analyze the inventory data. The results showed that the respondents listed 38 valuable woody species, and 79% occurred in the studied area. The field verification revealed that the dominant family in the area was Mimosaceae. Species abundance increased with fallow up to 10 years before declining in the latter years. Plant diversity and abundance had a weak relationship with the age of abandoned farmlands for woody trees, while the seedlings and saplings showed no relationship.

Multi-scale analysis on species diversity within a 40-ha old-growth temperate forest

In order to better explore the maintenance mechanisms of biodiversity, data collected from a 40-ha undisturbed Pinus forest were applied to the Individual Species-Area Relationship model(ISAR) to determine distribution patterns for species richness. The ecological processes influencing species abundance distribution patterns were assessed by applying the same data set to five models: a LogNormal Model(LNM), a Broken Stick Model(BSM), a Zipf Model(ZM), a Niche Preemption Model(NPM), and a Neutral Model(NM). Each of the five models was used at six different sampling scales(10 m×10 m, 20 m×20 m, 40 m×40 m, 60 m×60 m, 80 m×80 m, and 100 m×100 m). Model outputs showed that:(1) Accumulators and neutral species strongly influenced species diversity, but the relative importance of the two types of species varied across spatial scales.(2) Distribution patterns of species abundance were best explained by the NPM at small scales(10 m-20 m), whereas the NM was the best fit model at large spatial scales.(3) Species richness and abundance distribution patterns appeared to be driven by similar ecological processes. At small scales, the niche theory could be applied to describe species richness and abundance, while at larger scales the neutral theory was more applicable.

Unique genes carried by abundant species enhance CH_(4) emissions during the growing season at the Tibetan Plateau

CH_(4) emission rates followed an increased pattern during the growing season at Tibetan Plateau.•Unique genes carried by abundant species were positively correlated with CH_(4) emission rates.•Climate factors influenced CH_(4) emission rates by regulating microbial community and their genes.Microorganisms play pivotal roles in soil methane(CH_(4))emissions and their functional genes are origins of a key mechanism for soil CH4-cycling.However,understanding of the roles of specific genes(e.g.,unique or shared genes carried by species)underlying CH_(4)-cycling remains elusive.Here,we measured CH_(4) emission rates and investigated variations in microbial community and the abundance of genes carried by species during the growing season in alpine meadow on the Tibetan Plateau.We discovered that CH_(4) emission rates increased from 394.4,745.9,and 1092.7µg CH4 m−2 h−1,in April,June,and August,respectively,and had a positive correlation with unique genes carried by abundant species during the growing season.Moreover,we found that unique genes carried by abundant species involved in methanogenesis processes have a higher abundance than methanotrophic processes.Further analysis indicated that climate factors(i.e.,mean monthly temperature(MMT)and mean monthly precipitation(MMP))influenced microbial community and their functional genes,and therefore affected the CH_(4) emission rates.Overall,the present study provides a novel insight into the variation of soil CH4 emissions from a functional gene perspective,highlighting the important roles of unique genes carried by abundant species in CH4 emissions in the Tibetan Plateau under seasonal variation.

High-throughput metabarcoding of SAR11 assemblages from the southwest Atlantic shelf and arid Patagonia:richness and associated rank abundance distributions

Background:Massively parallel sequencing of environmental DNA allows microbiological studies to be performed in greater detail than was possible with first-generation sequencing.For example,it facilitates the use of approaches hitherto largely applied to flora and fauna,such as rank abundance distribution(RAD)analyses.Methods:Here,we set out to advance the knowledge on Ca.Pelagibacterales(SAR11)communities from southern South America using environmental sequences from the open ocean in the Argentine sea,the uncharted Engaño Bay,as well as a river and an oligohaline shallow lake from the Patagonian Steppe ecoregion.The structures of the SAR11 assemblages present in these ecosystems were dissected by direct and rarefaction-based estimates of species richness,and evaluations of the corresponding abundance distributions(ADs),which was addressed by RAD analyses.Results:Microbial community composition analyses revealed that the studied SAR11 assemblages coexist with 27 bacterial phyla.SAR11 richness was in general very high,but ADs turned out to be highly uneven.The results were compatible with prior knowledge,and similar to that derived from point estimates of diversity.However,our comprehensive dissection allowed for more detailed quantitative comparisons to be made between the environments surveyed,and revealed differences regarding both richness and the underlying ADs.Conclusions:Despite SAR11 assemblages being extremely rich,their ADs are very uneven.Richness and ADs can vary,not only between fresh and salt water,but also between oceanic and coastal marine environments.The obtained results provide insights on general topics such as adaptation and the contrast between marine and freshwater radiations.

Modeling effects of abiotic factors on the abundances of eight woody species in the Harana forest using artificial networks,random forest,and generalized linear models

Background Abiotic factors exert different impacts on the abundance of individual tree species in the forest but little has been known about the impact of abiotic factors on the individual plant,particularly,in a tropical forest.This study identified the impact of abiotic factors on the abundances of Podocarpus falcatus,Croton macrostachyus,Celtis africana,Syzygium guineense,Olea capensis,Diospyros abyssinica,Feliucium decipenses,and Coffea arabica.A systematic sample design was used in the Harana forest,where 1122 plots were established to collect the abundance of species.Random forest(RF),artificial neural network(ANN),and generalized linear model(GLM)models were used to examine the impacts of topographic,climatic,and edaphic factors on the log abundances of woody species.The RF model was used to predict the spatial distribution maps of the log abundances of each species.Results The RF model achieved a better prediction accuracy with R^(2)=71%and a mean squared error(MSE)of 0.28 for Feliucium decipenses.The RF model differentiated elevation,temperature,precipitation,clay,and potassium were the top variables that influenced the abundance of species.The ANN model showed that elevation induced a nega-tive impact on the log abundances of all woody species.The GLM model reaffirmed the negative impact of elevation on all woody species except the log abundances of Syzygium guineense and Olea capensis.The ANN model indicated that soil organic matter(SOM)could positively affect the log abundances of all woody species.The GLM showed a similar positive impact of SOM,except for a negative impact on the log abundance of Celtis africana at p<0.05.The spatial distributions of the log abundances of Coffee arabica,Filicium decipenses,and Celtis africana were confined to the eastern parts,while the log abundance of Olea capensis was limited to the western parts.Conclusions The impacts of abiotic factors on the abundance of woody species may vary with species.This ecological understanding could guide the restoration activity of individual species.The prediction maps in this study provide spatially explicit information which can enhance the successful implementation of species conservation.

Abundance and habitat-suitability relationship deteriorate in fragmented forest landscapes:a case of Adinandra griffithii Dyer,a threatened endemic tree from Meghalaya in northeast India

Introduction:A strong positive‘abundance and habitat-suitability’relationship is crucial for conservation of species.Nevertheless,anthropogenic alteration of natural landscapes leading to land use and land cover change,habitat loss,and species extinctions(may)have putatively disturbed this relationship.Hence,it is important to study the nature of the relationship in such human influenced landscapes.Methods:In this study,we endeavored to understand the consistency of the relationship in the fragmented natural landscapes in the Khasi,Garo,and Jaintia hills of Meghalaya in northeast India,with Adinandra griffithii(an endangered endemic tree)as a model species.We reconstructed the distribution of its suitable habitats as a function of the remotely sensed vegetation phenology(i.e.,EVI data),using point occurrence data and ecological niche modeling(ENM)tool.Estimation of the abundance and habitat characterization was done through field surveys following standard methods.Results:The study revealed that remotely sensed landscape-level vegetation phenology could effectively discriminate the suitable and unsuitable habitats of threatened species.Linear regression model showed a weak positive correlation between abundance and predicted habitat suitability for adult trees indicating(plausible)deterioration in the relationship.However,sapling and seedling populations did not show a precise trend in this respect.Field-based studies revealed that removal of the species from the suitable habitats because of anthropogenic disturbances possibly weakened the abundance-suitability relationship.Conclusions:The findings of the study enjoin the need for re-establishment of the species in the suitable areas for its conservation and perpetuation.

Response of Polygonum viviparum Species and Community Level to Long-term Livestock Grazing in Alpine Shrub Meadow in Qinghai-Tibet Plateau

Grazing by domestic herbivores is generally recognized as a major ecological factor and an important evolutionary force in grasslands, Grazing has both extensive and profound effects on individual plants and communities, We investigated the response patterns of Polygonum viviparum species and the species diversity of an alpine shrub meadow in response to long-term livestock grazing by a field manipulative experiment controlling livestock numbers on the Qinghai-Tibet Plateau in China, Here, we hypothesize that within a range of grazing pressure, grazing can alter relative allocation to different plant parts without changing total biomass for some plant species if there is life history trade-offs between plant traits, The same type of communities exposed to different grazing pressures may only alter relative species＇ abundances or species composition and not vary species diversity because plant species differ in resistant capability to herbivory, The results show that plant height and biomass of different organs differed among grazing treatments but total biomass remained constant, Biomass allocation and absolute investments to both reproduction and growth decreased and to belowground storage increased with increased grazing pressure, indicating the increasing in storage function was attained at a cost of reducing reproduction of bulbils and represented an optimal allocation and an adaptive response of the species to long- term aboveground damage, Moreover, our results showed multiform response types for either species groups or single species along the gradient of grazing intensity, Heavy grazing caused a 13,2% increase in species richness, There was difference in species composition of about 18%-20% among grazing treatment, Shannon-Wiener （H′） diversity index and species evenness （E） index did not differ among grazing treatments, These results support our hypothesis,

The effects of fertilization on the trait-abundance relationships in a Tibetan alpine meadow community

Aims Comparisons of the trait-abundance relationships from various habitat types are critical for community ecology,which can offer us insights about the mechanisms underlying the local community assembly,such as the relative role of neutral vs.niche processes in shaping community structure.Here,we explored the responses of trait-abundance relationships to nitrogen(N),phosphorus(P)and potassium(K)fertilization in an alpine meadow.Methods Five fertilization treatments(an unfertilized control and additions of N,P,K and NPK respectively)were implemented using randomized block design in an alpine Tibetan meadow.Species relative abundance(SRA),plant above-ground biomass and species richness were measured in each plot.For 24 common species,we measured species functional traits:saturated height,specific leaf area(SLA)and leaf dry matter content(LDMC)in each treatment but seed size only in the unfertilized control.Standard major axis(SMA)regression and phylogenetically independent contrasts(PICs)analysis were used to analyse species trait-abundance relationships in response to different fertilization treatments.Important Findings Positive correlations between SRA and saturated height were raised following N,P and NPK fertilizations,which indicated an increase in light competition in these plots.In P fertilized plots,SRA was also positively correlated with LDMC because tall grasses with a nutrients conservation strategy often have a relative competitive advantage in capturing limited light and soil nutrients.In K fertilized plots,neither the trait-abundance relationships nor above-ground biomass or species richness significantly differed from that in the control,which suggests that K was not a limiting resource in our study site.These significant correlations between species traits and relative abundance in fertilized treatment suggest that trait-based selection plays an important role in determining species abundance within local communities in alpine meadows.

Latitudinal and elevational patterns of phylogenetic structure in forest communities in China’s mountains

The phylogenetic structure incorporates both ecological and evolutionary processes to explain assembly of a local community.The "phylogenetic niche conservatism"(PNC) hypothesis suggests that distributions of species along environmental gradients reflect both ancestral traits and ecological fitness of individual species. The temperature is generally regarded to change in similar ways along both latitudinal and elevational gradients but with different historical contingence. Therefore, comparing the latitudinal and elevational patterns of phylogenetic structure of communities is of help to depict the effects of ecological and evolutionary processes in shaping the community assembly. In this study, we explored the latitudinal, elevational and climatic patterns of phylogenetic structure of 569 angiosperm tree communities from 38 mountains across China. We found a larger mean abundance-weighted net relatedness index(NRI) than the presence/absence-based NRI;and the NRI decreased when the species pool downscaled from the full pool to county-level pool. The mean family age and phylogenetic species evenness decreased with latitude, and increased with temperature of the coldest month and precipitation;whilst NRI increased with latitude, and decreased with mean temperature of the coldest month. In most mountains, NRI, mean family age and phylogenetic species evenness showed non-significant trends along the elevational gradient. Our results support the main predictions of PNC for the latitudinal gradient, i.e., species tend to be more phylogenetically related to each other and clades are younger in temperate environments,compared to those in tropical environments. We suggested that independent species pools and abundance should be incorporated in analysis to fully represent the phylogenetic structure of communities.

Toward development of ecosystem asset accounts at the national level

Ecosystem accounting has become one of the key components in the revision of international statistical standards.Expansion of the System of Environmental-Economic Accounting for ecosystem services follows the rapid progress of science in this area as well as expanding applications to sustainability challenges.In this contribution,we discuss approaches to accounting of ecosystem assets as a natural capital basis that is critical for ecosystem service delivery.Based on examples from the Czech Republic,a Central European country,we illustrate the construction of ecosystem extent accounts based on the methodology of Land and Ecosystem Accounting.This analysis is complemented by monetary ecosystem asset accounting through quantification of the present value of future ecosystem service flows.Ecosystem condition is represented by the Mean Species Abundance indicator,which gauges the direction of ecosystem naturalness.Based on the demonstration of approaches to ecosystem asset accounting,we discuss selected aspects of ecosystem condition measurements,valuation,and policy implications of ecosystem asset accounting at the national level.

An analysis of 15 years of trends in children’s connection with nature and its relationship with residential environment

Intruduction:We assessed recent trends in children's connection with nature over the period of 2000-2015,using indices of wildlife awareness that focus on changes in wildlife abundance and the level of apathy among children.We used data from a survey conducted in 63 junior high school districts in the city of Sendai in Japan.In these surveys,children were asked whether they had seen 12 species groups within the past year.To examine changes in children's connection with nature,we used observed frequencies as an indicator of both the abundance of the species and children's apathy toward it.Results and Discussions:Results indicated an increase in children's apathy toward species that had low popularity regardless of residential environment.Our results suggest that regular exposure to wildlife would be effective in preventing the loss of children's connection with nature,particularly by reducing children's apathy toward less-popular species.