Oxygen tension modulates cell function in an in vitro three-dimensional glioblastoma tumor model

Hypoxia is a typical feature of the tumor microenvironment,one of the most critical factors affecting cell behavior and tumor progression.However,the lack of tumor models able to precisely emulate natural brain tumor tissue has impeded the study of the effects of hypoxia on the progression and growth of tumor cells.This study reports a three-dimensional(3D)brain tumor model obtained by encapsulating U87MG(U87)cells in a hydrogel containing type I collagen.It also documents the effect of various oxygen concentrations(1%,7%,and 21%)in the culture environment on U87 cell morphology,proliferation,viability,cell cycle,apoptosis rate,and migration.Finally,it compares two-dimensional(2D)and 3D cultures.For comparison purposes,cells cultured in flat culture dishes were used as the control(2D model).Cells cultured in the 3D model proliferated more slowly but had a higher apoptosis rate and proportion of cells in the resting phase(G0 phase)/gap I phase(G1 phase)than those cultured in the 2D model.Besides,the two models yielded significantly different cell morphologies.Finally,hypoxia(e.g.,1%O2)affected cell morphology,slowed cell growth,reduced cell viability,and increased the apoptosis rate in the 3D model.These results indicate that the constructed 3D model is effective for investigating the effects of biological and chemical factors on cell morphology and function,and can be more representative of the tumor microenvironment than 2D culture systems.The developed 3D glioblastoma tumor model is equally applicable to other studies in pharmacology and pathology.

Three-dimensional limit variation analysis on the ultimate pullout capacity of the anchor cables based on the Hoek-Brown failure criterion

Only simplified two-dimensional model and a single failure mode are adopted to calculate the ultimate pullout capacity(UPC)of anchor cables in most previous research.This study focuses on a more comprehensive combination failure mode that consists of bond failure of an anchorage body and failure of an anchored rock mass.The three-dimensional ultimate pullout capacity of the anchor cables is calculated based on the Hoek-Brown failure criterion and variation analysis method.The numerical solution for the curvilinear function in fracture plane is obtained based on the finite difference theory,which more accurately reflects the failure state of the anchor cable,as opposed to that being assumed in advance.The results reveal that relying solely on a single failure mode for UPC calculations has limitations,as changes in parameter values not only directly impact the UPC value but also can alter the failure model and thus the calculation method.

Variational Reconstruction and Simulation Experiments of Sea Surface Wind Field for Ocean Data Buoy

The sea surface wind field is an important physical parameter in oceanography and meteorology.With the continuous refinement of numerical weather prediction,air-sea interface materials,energy exchange,and other studies,three-dimensional(3D)wind field distribution at local locations on the sea surface must be measured accurately.The current in-situ observation of sea surface wind parameters is mainly achieved through the installation of wind sensors on ocean data buoys.However,the results obtained from this single-point measurement method cannot reflect wind field distribution in a vertical direction above the sea surface.Thus,the present paper proposes a theoretical framework for the optimal inversion of the 3D wind field structure variation in the area where the buoy is located.The variation analysis method is first used to reconstruct the wind field distribution at different heights of the buoy,after which theoretical analysis verification and numerical simulation experiments are conducted.The results indicate that the use of variational methods to reconstruct 3D wind fields is significantly effective in eliminating disturbance errors in observations,which also verifies the correctness of the theoretical analysis of this method.The findings of this article can provide a reference for the layout optimization design of wind measuring instruments in buoy observation systems and also provide theoretical guidance for the design of new observation buoys in the future.

Variational Learned Talking-Head Semantic Coded Transmission System

Video transmission requires considerable bandwidth,and current widely employed schemes prove inadequate when confronted with scenes featuring prominently.Motivated by the strides in talkinghead generative technology,the paper introduces a semantic transmission system tailored for talking-head videos.The system captures semantic information from talking-head video and faithfully reconstructs source video at the receiver,only one-shot reference frame and compact semantic features are required for the entire transmission.Specifically,we analyze video semantics in the pixel domain frame-by-frame and jointly process multi-frame semantic information to seamlessly incorporate spatial and temporal information.Variational modeling is utilized to evaluate the diversity of importance among group semantics,thereby guiding bandwidth resource allocation for semantics to enhance system efficiency.The whole endto-end system is modeled as an optimization problem and equivalent to acquiring optimal rate-distortion performance.We evaluate our system on both reference frame and video transmission,experimental results demonstrate that our system can improve the efficiency and robustness of communications.Compared to the classical approaches,our system can save over 90%of bandwidth when user perception is close.

The Impact of Model Based Offset Scaling Technique on the Amplitude Variation with Offset Responses from 3D Seismic Data Acquired from the Tano Basin, Offshore Ghana

Amplitudes have been found to be a function of incident angle and offset. Hence data required to test for amplitude variation with angle or offset needs to have its amplitudes for all offsets preserved and not stacked. Amplitude Variation with Offset (AVO)/Amplitude Variation with Angle (AVA) is necessary to account for information in the offset/angle parameter (mode converted S-wave and P-wave velocities). Since amplitudes are a function of the converted S- and P-waves, it is important to investigate the dependence of amplitudes on the elastic (P- and S-waves) parameters from the seismic data. By modelling these effects for different reservoir fluids via fluid substitution, various AVO geobody classes present along the well and in the entire seismic cube can be observed. AVO analysis was performed on one test well (Well_1) and 3D pre-stack angle gathers from the Tano Basin. The analysis involves creating a synthetic model to infer the effect of offset scaling techniques on amplitude responses in the Tano basin as compared to the effect of unscaled seismic data. The spectral balance process was performed to match the amplitude spectra of all angle stacks to that of the mid (26°) stack on the test lines. The process had an effect primarily on the far (34° - 40°) stacks. The frequency content of these stacks slightly increased to match that of the near and mid stacks. In offset scaling process, the root mean square (RMS) amplitude comparison between the synthetic and seismic suggests that the amplitude of the far traces should be reduced relative to the nears by up to 16%. However, the exact scaler values depend on the time window considered. This suggests that the amplitude scaling with offset delivered from seismic processing is only approximately correct and needs to be checked with well synthetics and adjusted accordingly prior to use for AVO studies. The AVO attribute volumes generated were better at resolving anomalies on spectrally balanced and offset scaled data than data delivered from conventional processing. A typical class II AVO anomaly is seen along the test well from the cross-plot analysis and AVO attribute cube which indicates an oil filled reservoir.

Research on Three-Dimensional Simulation of the Internal Arc Gear Skiving

Aiming at the problems that the simulation accuracy which is reduced due to the simplification of the model,a three-dimensional simulation method based on solid modeling is being proposed.By analyzing the motion relationship and positional relationship between the caries knife and the workpiece,the coordinate system of the caries machining was established.With the MATLAB software,the cutting edge model and the blade sweeping surface model of the boring cutter are sequentially established.Boolean operation is performed on the blade swept surface formed by the tooth cutter teeth with time t and the workpiece tooth geometry as well as the undeformed three-dimensional chip geometry model and the instantaneous cogging geometry model are obtained at different times.Through the compare between gear end face simulation tooth profile and the theoretical inner arc tooth profile,we verified the accuracy and rationality of the proposed method.

Study of the geomagnetic field's regional gradients in Chinese continent using three-dimensional surface Spline model

We combined domestic ground-based and satellite magnetic measurements to create a regional three-dimensional surface Spline(3DSS)gradient model of the main geomagnetic field over the Chinese continent.To improve the precision of the model,we considered the data gap between the ground and satellite data.We compared and analyzed the results of the Taylor polynomial,surface Spline,and CHAOS-6(the CHAMP,?rsted and SAC-C model of Earth’s magnetic field)gradient models.Results showed that the gradients in the south-north and east-west directions of the four models were consistent.The 3DSS model was able to express not only gradients at different altitudes,but also average gradients inside the research area.The two Spline models were able to capture more information on gradient anomalies than were the fitted models.Strong local anomalies were observed in northern Xinjiang,Beijing,and the junction area between Jiangsu and Zhejiang,and the total intensity F decreased whereas the altitude increased.The gradient decreased by 21.69%in the south-north direction and increased by 11.78%in the east-west direction.In addition,the altitude gradient turned from negative to positive while the altitude increased.The Spline model and the two fitted models differed mainly in the field sources they expressed and the modeling theory.

Can preoperative planning using IRIS™three-dimensional anatomical virtual models predict operative findings during robot-assisted partial nephrectomy?

Objective To evaluate the predictive validity of IRIS™(Intuitive Surgical®,Sunnyvale,CA,USA)as a planning tool for robot-assisted partial nephrectomy(RAPN)by assessing the degree of overlap with intraoperative execution.Methods Thirty-one patients scheduled for RAPN by four experienced urologists were enrolled in a prospective study.Prior to surgery,urologists reviewed the IRIS™three-dimensional model on an iphone Operating System(iOS)app and completed a questionnaire outlining their surgical plan including surgical approach,and ischemia technique as well as confidence in executing this plan.Postoperatively,questionnaires assessing the procedural approach,clinical utility,efficiency,and effectiveness of IRIS™were completed.The degree of overlap between the preoperative and intraoperative questionnaires and between the planned approach and actual execution of the procedure was analyzed.Questionnaires were answered on a 5-point Likert scale and scores of 4 or greater were considered positive.Results Mean age was 65.1 years with a mean tumor size of 27.7 mm(interquartile range 17.5-44.0 mm).Hilar tumors consisted of 32.3%;48.4%of patients had R.E.N.A.L.nephrometry scores of 7-9.On preoperative questionnaires,the surgeons reported that in 67.7%cases they were confident that they can perform the procedure successfully,and on intraoperative questionnaires,the surgeons reported that in 96.8%cases IRIS™helped achieve good spatial sensation of the anatomy.There was a high degree of overlap between preoperative and intraoperative questionnaires for the surgical approach,interpreting anatomical details and clinical utility.When comparing plans for selective or off-clamp,the preoperative plan was executed in 90.0%of cases intraoperatively.Conclusion A high degree of overlap between the preoperative surgical approach and intraoperative RAPN execution was found using IRIS™.This is the first study to evaluate the predictive accuracy of IRIS™during RAPN by comparing preoperative plan and intraoperative execution.

Three-Dimensional Analytical Modeling of Axial-Flux Permanent Magnet Drivers

In this paper, the axial-flux permanent magnet driver is modeledand analyzed in a simple and novel way under three-dimensional cylindricalcoordinates. The inherent three-dimensional characteristics of the deviceare comprehensively considered, and the governing equations are solved bysimplifying the boundary conditions. The axial magnetization of the sectorshapedpermanent magnets is accurately described in an algebraic form bythe parameters, which makes the physical meaning more explicit than thepurely mathematical expression in general series forms. The parameters of theBessel function are determined simply and the magnetic field distribution ofpermanent magnets and the air-gap is solved. Furthermore, the field solutionsare completely analytical, which provides convenience and satisfactoryaccuracy for modeling a series of electromagnetic performance parameters,such as the axial electromagnetic force density, axial electromagnetic force,and electromagnetic torque. The correctness and accuracy of the analyticalmodels are fully verified by three-dimensional finite element simulations and a15 kW prototype and the results of calculations, simulations, and experimentsunder three methods are highly consistent. The influence of several designparameters on magnetic field distribution and performance is studied and discussed.The results indicate that the modeling method proposed in this papercan calculate the magnetic field distribution and performance accurately andrapidly, which affords an important reference for the design and optimizationof axial-flux permanent magnet drivers.

A theoretical study of the multigrid three-dimensional variational data assimilation scheme using a simple bilinear interpolation algorithm

In order to solve the so-called ＂bull-eye＂ problem caused by using a simple bilinear interpolation as an observational mapping operator in the cost function in the multigrid three-dimensional variational （3DVAR） data assimilation scheme, a smoothing term, equivalent to a penalty term, is introduced into the cost function to serve as a means of troubleshooting. A theoretical analysis is first performed to figure out what on earth results in the issue of ＂bull-eye＂, and then the meaning of such smoothing term is elucidated and the uniqueness of solution of the multigrid 3DVAR with the smoothing term added is discussed through the theoretical deduction for one-dimensional （1D） case, and two idealized data assimilation experiments （one- and two-dimensional （2D） cases）. By exploring the relationship between the smoothing term and the recursive filter theoretically and practically, it is revealed why satisfied analysis results can be achieved by using such proposed solution for the issue of the multigrid 3DVAR.

Three-Dimensional Wind Field Retrieved from Dual-Doppler Radar Based on a Variational Method:Refinement of Vertical Velocity Estimates

In this paper,a scheme of dual-Doppler radar wind analysis based on a three-dimensional variational method is proposed and performed in two steps.First,the horizontal wind field is simultaneously recovered through minimizing a cost function defined as a radial observation term with the standard conjugate gradient method,avoiding a weighting parameter specification step.Compared with conventional dual-Doppler wind synthesis approaches,this variational method minimizes errors caused by interpolation from radar observation to analysis grid in the iterative solution process,which is one of the main sources of errors.Then,through the accelerated Liebmann method,the vertical velocity is further reestimated as an extra step by solving the Poisson equation with impermeable conditions imposed at the ground and near the tropopause.The Poisson equation defined by the second derivative of the vertical velocity is derived from the mass continuity equation.Compared with the method proposed by O’Brien,this method is less sensitive to the uncertainty of the boundary conditions and has better stability and reliability.Furthermore,the method proposed in this paper is applied to Doppler radar observation of a squall line process.It is shown that the retrieved vertical wind profile agrees well with the vertical profile obtained with the velocity–azimuth display(VAD)method,and the retrieved radial velocity as well as the analyzed positive and negative velocity centers and horizontal wind shear of the squall line are in accord with radar observations.There is a good correspondence between the divergence field of the derived wind field and the vertical velocity.And,the horizontal and vertical circulations within and around the squall line,as well as strong updrafts,the associated downdrafts,and associated rear inflow of the bow echo,are analyzed well.It is worth mentioning that the variational method in this paper can be applied to simultaneously synthesize the three-dimensional wind field from multiple-Doppler radar observations.

Three-Dimensional Models for Analyzing the Cyclic Variations in a Lean Burn CNG Engine

Three-dimensional models, consisting of the flame kernel formation model, flame kernel development model and natural gas single step reaction model, are used to analyze the contribution of cyclic equivalence ratio variations to cyclic variations in the compressed natural gas （CNG） lean burn spark ignition engine. Computational results including the contributions of equivalence ratio cyclic variations to each combustion stage and effects of engine speed to the extent of combustion variations are discussed. It is concluded that the equivalence ratio variations affect mostly the main stage of combustion and hardly influence initial kernel development stage.

Modeling of Geometric Variations Within Three-Dimensional Tolerance Zones

A tolerance modeling method of geometric variations within three-dimensional(3D) tolerance domain is proposed.According to the classification method of feature variations and classes of invariance or symmetry in the new generation Geometrical Product Specifications(GPS) system,the proposed method is based on the Small Displacement Torsor(SDT) concept,and SDT is used to represent the geometric deviations between the nominal feature and the fitting feature. Furthermore,the variation zones of several kinds complex or irregular geometric features are constructed,and the corresponding tolerance modeling methods are discussed respectively. Finally,an example is presented to verify the efficiency of the presented method for modeling 3D dimensional and geometrical tolerances.The proposed modeling method based on the complete mathematical foundation conforms with the design philosophy and principle of the new generation GPS standards system.

Prediction of Salinity Variations in a Tidal Estuary Using Artificial Neural Network and Three-Dimensional Hydrodynamic Models

The simulation of salinity at different locations of a tidal river using physically-based hydrodynamic models is quite cumbersome because it requires many types of data, such as hydrological and hydraulic time series at boundaries, river geometry, and adjusted coefficients. Therefore, an artificial neural network (ANN) technique using a back-propagation neural network (BPNN) and a radial basis function neural network (RBFNN) is adopted as an effective alternative in salinity simulation studies. The present study focuses on comparing the performance of BPNN, RBFNN, and three-dimensional hydrodynamic models as applied to a tidal estuarine system. The observed salinity data sets collected from 18 to 22 May, 16 to 22 October, and 26 to 30 October 2002 (totaling 4320 data points) were used for BPNN and RBFNN model training and for hydrodynamic model calibration. The data sets collected from 30 May to 2 June and 11 to 15 November 2002 (totaling 2592 data points) were adopted for BPNN and RBFNN model verification and for hydrodynamic model verification. The results revealed that the ANN (BPNN and RBFNN) models were capable of predicting the nonlinear time series behavior of salinity to the multiple forcing signals of water stages at different stations and freshwater input at upstream boundaries. The salinity predicted by the ANN models was better than that predicted by the physically based hydrodynamic model. This study suggests that BPNN and RBFNN models are easy-to-use modeling tools for simulating the salinity variation in a tidal estuarine system.

Shear behavior of intact granite under thermo-mechanical coupling and three-dimensional morphology of shear-formed fractures

The shear failure of intact rock under thermo-mechanical(TM)coupling conditions is common,such as in enhanced geothermal mining and deep mine construction.Under the effect of a continuous engineering disturbance,shear-formed fractures are prone to secondary instability,posing a severe threat to deep engineering.Although numerous studies regarding three-dimensional(3D)morphologies of fracture surfaces have been conducted,the understanding of shear-formed fractures under TM coupling conditions is limited.In this study,direct shear tests of intact granite under various TM coupling conditions were conducted,followed by 3D laser scanning tests of shear-formed fractures.Test results demonstrated that the peak shear strength of intact granite is positively correlated with the normal stress,whereas it is negatively correlated with the temperature.The internal friction angle and cohesion of intact granite significantly decrease with an increase in the temperature.The anisotropy,roughness value,and height of the asperities on the fracture surfaces are reduced as the normal stress increases,whereas their variation trends are the opposite as the temperature increases.The macroscopic failure mode of intact granite under TM coupling conditions is dominated by mixed tensileeshear and shear failures.As the normal stress increases,intragranular fractures are developed ranging from a local to a global distribution,and the macroscopic failure mode of intact granite changes from mixed tensileeshear to shear failure.Finally,3D morphological characteristics of the asperities on the shear-formed fracture surfaces were analyzed,and a quadrangular pyramid conceptual model representing these asperities was proposed and sufficiently verified.

Testing a Four-Dimensional Variational Data Assimilation Method Using an Improved Intermediate Coupled Model for ENSO Analysis and Prediction

A four-dimensional variational （4D-Var） data assimilation method is implemented in an improved intermediate coupled model （ICM） of the tropical Pacific. A twin experiment is designed to evaluate the impact of the 4D-Var data assimilation algorithm on ENSO analysis and prediction based on the ICM. The model error is assumed to arise only from the parameter uncertainty. The ＂observation＂ of the SST anomaly, which is sampled from a ＂truth＂ model simulation that takes default parameter values and has Gaussian noise added, is directly assimilated into the assimilation model with its parameters set erroneously. Results show that 4D-Var effectively reduces the error of ENSO analysis and therefore improves the prediction skill of ENSO events compared with the non-assimilation case. These results provide a promising way for the ICM to achieve better real-time ENSO prediction.

A three-dimensional semi-implicit unstructured grid finite volume ocean model

A new three-dimensional semi-implicit finite-volume ocean model has been developed for simulating the coastal ocean circulation, which is based on the staggered C-unstructured non-orthogonal grid in the hor- izontal direction and z-level grid in the vertical direction. The three-dimensional model is discretized by the semi-implicit finite-volume method, in that the free-surface and the vertical diffusion are semi-implicit, thereby removing stability limitations associated with the surface gravity wave and vertical diffusion terms. The remaining terms in the momentum equations are discretized explicitly by an integral method. The partial cell method is used for resolving topography, which enables the model to better represent irregular topography. The model has been tested against analytical cases for wind and tidal oscillation circulation, and is applied to simulating the tidal flow in the Bohal Sea. The results are in good agreement both with the analytical solutions and measurement results.

Observed spatiotemporal variation of three-dimensional structure and heat/salt transport of anticyclonic mesoscale eddy in Northwest Pacific

As in-situ observations are sparse,targeted observations of a specific mesoscale eddy are rare.Therefore,it is difficult to study the three-dimensional structure of moving mesoscale eddies.From April to September 2014,an anticyclonic eddy located at 135°E-155°E,26°N-42°N was observed using 17 rapidsampling Argo floats,and the spatiotemporal variations in the three-dimensional structure were studied.The results are as follows:(1)the eddy was identified and tracked using satellite altimeter data.It had a lifetime of 269 days and an average radius of 91.5 km.The lifetime of the eddy can be divided into three phases,i.e.,the initiation,maturity,and termination phases.The depth of its influence reached 1000 m;(2)the Argo profiles were divided into seven periods(approximately 20 days in each)for composite analysis,and the composite Argo profiles and CARS2009(CSIRO Atlas of Regional Seas)climatology data were merged following the data-interpolating variational analysis(DIVA)method to reconstruct the three-dimensional structure.The temperature and salinity anomaly cores of the anticyclonic mesoscale eddy are located from 400 to 600 m.From 800 to 900 m,there is an area of low salinity at the center of the eddy.A high concentration anomaly of dissolved oxygen was located at approximately 250 m;(3)to better understand the features of the eddy and its interaction with the surroundings,we calculated the anomalous velocity of the geostrophic flow and the heat,salt,dissolved oxygen transport anomaly,and discussed the eddy's origin and its adjustments to topography.The maximum heat,salt,and oxygen transport caused by eddy were 9.37×10^11 W,3.08×10^3 kg/s,and 2.70×10^2 kg/s,which all occurred during the termination phase.This study highlights the applicability of using Argo floats to understand the three-dimensional structure thermohaline features of eddies in the North Pacific.

The three-dimensional structure and seasonal variation of the North Pacific meridional overturning circulation

The three-dimensional structure and the seasonal variation of the North Pacific meridional overturning circulation （NPMOC） are analyzed based on the Simple Ocean Data Assimilation data and Argo profiling float data. The NPMOC displays a multi-cell structure with four cells in the North Pacific altogether. The TC and the STC are a strong clockwise meridional cell in the low latitude ocean and a weaker clockwise meridional cell between 7°N and 18°N, respectively, while the DTC and the subpolar cell are a weaker anticlockwise meridional cell between 3°N and 15°N and a weakest anticlockwise meridional cell between 35°N and 50°N, respectively. The DTC, the TC and the STC are all of very strong seasonal variations. As to the DTC, the southward transport is strongest in fall and weakest in spring. For the TC, the northward transport is strongest in winter and weakest in spring, while the southward transport is strongest in fall and weakest in spring, which is associated with the strong southward fiow of the DTC in fall. As the STC, the northward transport is strongest in winter and weakest in summer, while the southward transport is strongest in summer and weakest in spring. This seasonal difference may be associated with the DTC. The zonal wind stress and the east-west slope of sea level play important roles in the seasonal variations of the TC, the STC and the DTC.

Discontinuity development patterns and the challenges for 3D discrete fracture network modeling on complicated exposed rock surfaces

Natural slopes usually display complicated exposed rock surfaces that are characterized by complex and substantial terrain undulation and ubiquitous undesirable phenomena such as vegetation cover and rockfalls.This study presents a systematic outcrop research of fracture pattern variations in a complicated rock slope,and the qualitative and quantitative study of the complex phenomena impact on threedimensional(3D)discrete fracture network(DFN)modeling.As the studies of the outcrop fracture pattern have been so far focused on local variations,thus,we put forward a statistical analysis of global variations.The entire outcrop is partitioned into several subzones,and the subzone-scale variability of fracture geometric properties is analyzed(including the orientation,the density,and the trace length).The results reveal significant variations in fracture characteristics(such as the concentrative degree,the average orientation,the density,and the trace length)among different subzones.Moreover,the density of fracture sets,which is approximately parallel to the slope surface,exhibits a notably higher value compared to other fracture sets across all subzones.To improve the accuracy of the DFN modeling,the effects of three common phenomena resulting from vegetation and rockfalls are qualitatively analyzed and the corresponding quantitative data processing solutions are proposed.Subsequently,the 3D fracture geometric parameters are determined for different areas of the high-steep rock slope in terms of the subzone dimensions.The results show significant variations in the same set of 3D fracture parameters across different regions with density differing by up to tenfold and mean trace length exhibiting differences of 3e4 times.The study results present precise geological structural information,improve modeling accuracy,and provide practical solutions for addressing complex outcrop issues.