To solve the problem of poor anti-noise performance of the traditional fuzzy C-means (FCM) algorithm in image segmentation, a novel two-dimensional FCM clustering algorithm for image segmentation was proposed. In this...To solve the problem of poor anti-noise performance of the traditional fuzzy C-means (FCM) algorithm in image segmentation, a novel two-dimensional FCM clustering algorithm for image segmentation was proposed. In this method, the image segmentation was converted into an optimization problem. The fitness function containing neighbor information was set up based on the gray information and the neighbor relations between the pixels described by the improved two-dimensional histogram. By making use of the global searching ability of the predator-prey particle swarm optimization, the optimal cluster center could be obtained by iterative optimization, and the image segmentation could be accomplished. The simulation results show that the segmentation accuracy ratio of the proposed method is above 99%. The proposed algorithm has strong anti-noise capability, high clustering accuracy and good segment effect, indicating that it is an effective algorithm for image segmentation.展开更多
AIM:To investigate the spatial distribution patterns of anorectal atresia/stenosis in China.METHODS:Data were collected from the Chinese Birth Defects Monitoring Network(CBDMN),a hospital-based congenital malformation...AIM:To investigate the spatial distribution patterns of anorectal atresia/stenosis in China.METHODS:Data were collected from the Chinese Birth Defects Monitoring Network(CBDMN),a hospital-based congenital malformations registry system.All fetuses more than 28 wk of gestation and neonates up to 7 d of age in hospitals within the monitoring sites of the CBDMN were monitored from 2001 to 2005.Two-dimensional graph-theoretical clustering was used to divide monitoring sites of the CBDMN into different clusters according to the average incidences of anorectal atresia/stenosis in the different monitoring sites.RESULTS:The overall average incidence of anorectal atresia/stenosis in China was 3.17 per 10000 from 2001 to 2005.The areas with the highest average incidences of anorectal atresia/stenosis were almost always focused in Eastern China.The monitoring sites were grouped into 6 clusters of areas.Cluster 1 comprised the monitoring sites in Heilongjiang Province,Jilin Province,and Liaoning Province;Cluster 2 was composed of those in Fujian Province,Guangdong Province,Hainan Province,Guangxi Zhuang Autonomous Region,south Hunan Province,and south Jiangxi Province;Cluster 3 consisted of those in Beijing Municipal City,Tianjin Municipal City,Hebei Province,Shandong Province,north Jiangsu Province,and north Anhui Province;Cluster 4 was made up of those in Zhejiang Province,Shanghai Municipal City,south Anhui Province,south Jiangsu Province,north Hunan Province,north Jiangxi Province,Hubei Province,Henan Province,Shanxi Province and Inner Mongolia Autonomous Region;Cluster 5 consisted of those in Ningxia Hui Autonomous Region,Gansu Province and Qinghai Province;and Cluster 6 included those in Shaanxi Province,Sichuan Province,Chongqing Municipal City,Yunnan Province,Guizhou Province,Xinjiang Uygur Autonomous Province and Tibet Autonomous Region.CONCLUSION:The fi ndings in this research allow the display of the spatial distribution patterns of anorectal atresia/stenosis in China.These will have important guiding significance for further analysis of relevant environmental factors regarding anorectal atresia/ stenosis and for achieving regional monitoring for anorectal atresia/stenosis.展开更多
The emergence of high performance 3D graphics cards has opened the way to PC clusters for high performance multi- display environment. In order to exploit the rendering ability of PC clusters, we should design appropr...The emergence of high performance 3D graphics cards has opened the way to PC clusters for high performance multi- display environment. In order to exploit the rendering ability of PC clusters, we should design appropriate parallel rendering algorithms and parallel graphics library interfaces. Due to the rapid development of Direct3D, we bring forward DPGL, the Direct3D9-based parallel graphics library in D3DPR parallel rendering system, which implements Direct3D9 interfaces to support existing Direct3D9 application parallelization with no modification. Based on the parallelism analysis of Direct3D9 rendering pipeline, we briefly introduce D3DPR parallel rendering system. DPGL is the fundamental component of D3DPR. After presenting DPGL three layers architecture, we discuss the rendering resource interception and management. Finally, we describe the design and implementation of DPGL in detail, including rendering command interception layer, rendering command interpretation layer and rendering resource parallelization layer.展开更多
Large eddy simulation (LES) using the Smagorinsky eddy viscosity model is added to the two-dimensional nine velocity components (D2Q9) lattice Boltzmann equation (LBE) with multi-relaxation-time (MRT) to simul...Large eddy simulation (LES) using the Smagorinsky eddy viscosity model is added to the two-dimensional nine velocity components (D2Q9) lattice Boltzmann equation (LBE) with multi-relaxation-time (MRT) to simulate incompressible turbulent cavity flows with the Reynolds numbers up to 1 × 10^7. To improve the computation efficiency of LBM on the numerical simulations of turbulent flows, the massively parallel computing power from a graphic processing unit (GPU) with a computing unified device architecture (CUDA) is introduced into the MRT-LBE-LES model. The model performs well, compared with the results from others, with an increase of 76 times in computation efficiency. It appears that the higher the Reynolds numbers is, the smaller the Smagorinsky constant should be, if the lattice number is fixed. Also, for a selected high Reynolds number and a selected proper Smagorinsky constant, there is a minimum requirement for the lattice number so that the Smagorinsky eddy viscosity will not be excessively large.展开更多
[ Objective] This study aimed to construct four-dimensional graphics of nucleotide sequences of six genes in rice ( GluB-6, GtuB-7, PDIL2, OsMPK1, OsCATC, OsCATA) and to conduct phase-space clustering, thus demonstr...[ Objective] This study aimed to construct four-dimensional graphics of nucleotide sequences of six genes in rice ( GluB-6, GtuB-7, PDIL2, OsMPK1, OsCATC, OsCATA) and to conduct phase-space clustering, thus demonstrating the relationship between the structure and function of rice genes. [ Method ] Base sequences were represented by four-dimensional graphics and clustered in the phase space. The relationship between clustering results and biological characteristics of these genes were analyzed. [ Result] Genes with similar four-dimensional graphics exhibit similar biological characteristics. [ Conclusion] Four-dimensional graphics of genes with different functions and base lengths present phase-space relationship with their biological functions, which provided an effective way for the prediction of gene function.展开更多
In this paper,the synthesis of a novel polyoxovanadiumborate[Li(H2O)3]3[V12B18O48(OH)12(OH)]·(H2O)5by hydrothermal method.FTIR,2DFTIR and UV-Vis absorption spectroscopy were employed to explore the relationships ...In this paper,the synthesis of a novel polyoxovanadiumborate[Li(H2O)3]3[V12B18O48(OH)12(OH)]·(H2O)5by hydrothermal method.FTIR,2DFTIR and UV-Vis absorption spectroscopy were employed to explore the relationships between structure and properties of 3-D compound 1.展开更多
We demonstrate real-time three-dimensional(3D)color video using a color electroholographic system with a cluster of multiple-graphics processing units(multi-GPU)and three spatial light modulators(SLMs)corresponding re...We demonstrate real-time three-dimensional(3D)color video using a color electroholographic system with a cluster of multiple-graphics processing units(multi-GPU)and three spatial light modulators(SLMs)corresponding respectively to red,green,and blue(RGB)-colored reconstructing lights.The multi-GPU cluster has a computer-generated hologram(CGH)display node containing a GPU,for displaying calculated CGHs on SLMs,and four CGH calculation nodes using 12 GPUs.The GPUs in the CGH calculation node generate CGHs corresponding to RGB reconstructing lights in a 3D color video using pipeline processing.Real-time color electroholography was realized for a 3D color object comprising approximately 21,000 points per color.展开更多
Systems containing multiple graphics-processing-unit(GPU)clusters are difficult to use for real-time electroholography when using only a single spatial light modulator because the transfer of the computer-generated ho...Systems containing multiple graphics-processing-unit(GPU)clusters are difficult to use for real-time electroholography when using only a single spatial light modulator because the transfer of the computer-generated hologram data between the GPUs is bottlenecked.To overcome this bottleneck,we propose a rapid GPU packing scheme that significantly reduces the volume of the required data transfer.The proposed method uses a multi-GPU cluster system connected with a cost-effective gigabit Ethernet network.In tests,we achieved real-time electroholography of a three-dimensional(3D)video presenting a point-cloud 3D object made up of approximately 200,000 points.展开更多
The density peak (DP) algorithm has been widely used in scientific research due to its novel and effective peak density-based clustering approach. However, the DP algorithm uses each pair of data points several time...The density peak (DP) algorithm has been widely used in scientific research due to its novel and effective peak density-based clustering approach. However, the DP algorithm uses each pair of data points several times when determining cluster centers, yielding high computational complexity. In this paper, we focus on accelerating the time-consuming density peaks algorithm with a graphics processing unit (GPU). We analyze the principle of the algorithm to locate its computational bottlenecks, and evaluate its potential for parallelism. In light of our analysis, we propose an efficient parallel DP algorithm targeting on a GPU architecture and implement this parallel method with compute unified device architecture (CUDA), called the ‘CUDA-DP platform'. Specifically, we use shared memory to improve data locality, which reduces the amount of global memory access. To exploit the coalescing accessing mechanism of CPU, we convert the data structure of the CUDA-DP program from array of structures to structure of arrays. In addition, we introduce a binary search-and-sampling method to avoid sorting a large array. The results of the experiment show that CUDA-DP can achieve a 45-fold acceleration when compared to the central processing unit based density peaks implementation.展开更多
Computationally, the calculation of computer-generated holograms is extremely expensive, and the image quality deteriorates when reconstructing three-dimensional(3 D) holographic video from a point-cloud model compris...Computationally, the calculation of computer-generated holograms is extremely expensive, and the image quality deteriorates when reconstructing three-dimensional(3 D) holographic video from a point-cloud model comprising a huge number of object points. To solve these problems, we implement herein a spatiotemporal division multiplexing method on a cluster system with 13 GPUs connected by a gigabit Ethernet network.A performance evaluation indicates that the proposed method can realize a real-time holographic video of a3 D object comprising ~1,200,000 object points. These results demonstrate a clear 3 D holographic video at32.7 frames per second reconstructed from a 3 D object comprising 1,064,462 object points.展开更多
基金Project(06JJ50110) supported by the Natural Science Foundation of Hunan Province, China
文摘To solve the problem of poor anti-noise performance of the traditional fuzzy C-means (FCM) algorithm in image segmentation, a novel two-dimensional FCM clustering algorithm for image segmentation was proposed. In this method, the image segmentation was converted into an optimization problem. The fitness function containing neighbor information was set up based on the gray information and the neighbor relations between the pixels described by the improved two-dimensional histogram. By making use of the global searching ability of the predator-prey particle swarm optimization, the optimal cluster center could be obtained by iterative optimization, and the image segmentation could be accomplished. The simulation results show that the segmentation accuracy ratio of the proposed method is above 99%. The proposed algorithm has strong anti-noise capability, high clustering accuracy and good segment effect, indicating that it is an effective algorithm for image segmentation.
基金Supported by The National Science & Technology Pillar Program during the Eleventh Five-year Plan Period, Grant No. 2006BAI05A01
文摘AIM:To investigate the spatial distribution patterns of anorectal atresia/stenosis in China.METHODS:Data were collected from the Chinese Birth Defects Monitoring Network(CBDMN),a hospital-based congenital malformations registry system.All fetuses more than 28 wk of gestation and neonates up to 7 d of age in hospitals within the monitoring sites of the CBDMN were monitored from 2001 to 2005.Two-dimensional graph-theoretical clustering was used to divide monitoring sites of the CBDMN into different clusters according to the average incidences of anorectal atresia/stenosis in the different monitoring sites.RESULTS:The overall average incidence of anorectal atresia/stenosis in China was 3.17 per 10000 from 2001 to 2005.The areas with the highest average incidences of anorectal atresia/stenosis were almost always focused in Eastern China.The monitoring sites were grouped into 6 clusters of areas.Cluster 1 comprised the monitoring sites in Heilongjiang Province,Jilin Province,and Liaoning Province;Cluster 2 was composed of those in Fujian Province,Guangdong Province,Hainan Province,Guangxi Zhuang Autonomous Region,south Hunan Province,and south Jiangxi Province;Cluster 3 consisted of those in Beijing Municipal City,Tianjin Municipal City,Hebei Province,Shandong Province,north Jiangsu Province,and north Anhui Province;Cluster 4 was made up of those in Zhejiang Province,Shanghai Municipal City,south Anhui Province,south Jiangsu Province,north Hunan Province,north Jiangxi Province,Hubei Province,Henan Province,Shanxi Province and Inner Mongolia Autonomous Region;Cluster 5 consisted of those in Ningxia Hui Autonomous Region,Gansu Province and Qinghai Province;and Cluster 6 included those in Shaanxi Province,Sichuan Province,Chongqing Municipal City,Yunnan Province,Guizhou Province,Xinjiang Uygur Autonomous Province and Tibet Autonomous Region.CONCLUSION:The fi ndings in this research allow the display of the spatial distribution patterns of anorectal atresia/stenosis in China.These will have important guiding significance for further analysis of relevant environmental factors regarding anorectal atresia/ stenosis and for achieving regional monitoring for anorectal atresia/stenosis.
基金This work was supported by National Basic Research Program of China (No.2002CB312105)Key National Natural Science Foundation of China Project on Digital Olympic Museum(No.60533080).
文摘The emergence of high performance 3D graphics cards has opened the way to PC clusters for high performance multi- display environment. In order to exploit the rendering ability of PC clusters, we should design appropriate parallel rendering algorithms and parallel graphics library interfaces. Due to the rapid development of Direct3D, we bring forward DPGL, the Direct3D9-based parallel graphics library in D3DPR parallel rendering system, which implements Direct3D9 interfaces to support existing Direct3D9 application parallelization with no modification. Based on the parallelism analysis of Direct3D9 rendering pipeline, we briefly introduce D3DPR parallel rendering system. DPGL is the fundamental component of D3DPR. After presenting DPGL three layers architecture, we discuss the rendering resource interception and management. Finally, we describe the design and implementation of DPGL in detail, including rendering command interception layer, rendering command interpretation layer and rendering resource parallelization layer.
基金supported by College of William and Mary,Virginia Institute of Marine Science for the study environment
文摘Large eddy simulation (LES) using the Smagorinsky eddy viscosity model is added to the two-dimensional nine velocity components (D2Q9) lattice Boltzmann equation (LBE) with multi-relaxation-time (MRT) to simulate incompressible turbulent cavity flows with the Reynolds numbers up to 1 × 10^7. To improve the computation efficiency of LBM on the numerical simulations of turbulent flows, the massively parallel computing power from a graphic processing unit (GPU) with a computing unified device architecture (CUDA) is introduced into the MRT-LBE-LES model. The model performs well, compared with the results from others, with an increase of 76 times in computation efficiency. It appears that the higher the Reynolds numbers is, the smaller the Smagorinsky constant should be, if the lattice number is fixed. Also, for a selected high Reynolds number and a selected proper Smagorinsky constant, there is a minimum requirement for the lattice number so that the Smagorinsky eddy viscosity will not be excessively large.
基金Supported by Eleventh Five-Year Development Planning for Instructional Science in Hubei Province(2006B131)
文摘[ Objective] This study aimed to construct four-dimensional graphics of nucleotide sequences of six genes in rice ( GluB-6, GtuB-7, PDIL2, OsMPK1, OsCATC, OsCATA) and to conduct phase-space clustering, thus demonstrating the relationship between the structure and function of rice genes. [ Method ] Base sequences were represented by four-dimensional graphics and clustered in the phase space. The relationship between clustering results and biological characteristics of these genes were analyzed. [ Result] Genes with similar four-dimensional graphics exhibit similar biological characteristics. [ Conclusion] Four-dimensional graphics of genes with different functions and base lengths present phase-space relationship with their biological functions, which provided an effective way for the prediction of gene function.
基金the NNSFC(21473030,1371033)Fujian Provincial Natural Science Foundation(2013J01042)the Open Fund of State Key Laboratory of Structural Chemistry(20130015)
文摘In this paper,the synthesis of a novel polyoxovanadiumborate[Li(H2O)3]3[V12B18O48(OH)12(OH)]·(H2O)5by hydrothermal method.FTIR,2DFTIR and UV-Vis absorption spectroscopy were employed to explore the relationships between structure and properties of 3-D compound 1.
基金partially supported by the Japan Society for the Promotion of Science(JSPS)KAKENHI(Nos.18K11399 and 19H01097)the Telecommunications Advancement Foundation.
文摘We demonstrate real-time three-dimensional(3D)color video using a color electroholographic system with a cluster of multiple-graphics processing units(multi-GPU)and three spatial light modulators(SLMs)corresponding respectively to red,green,and blue(RGB)-colored reconstructing lights.The multi-GPU cluster has a computer-generated hologram(CGH)display node containing a GPU,for displaying calculated CGHs on SLMs,and four CGH calculation nodes using 12 GPUs.The GPUs in the CGH calculation node generate CGHs corresponding to RGB reconstructing lights in a 3D color video using pipeline processing.Real-time color electroholography was realized for a 3D color object comprising approximately 21,000 points per color.
基金supported by the Japan Society for the Promotion of Science(JSPS)KAKENHI(Nos.18K11399 and 19H01097)the Telecommunications Advancement Foundation.
文摘Systems containing multiple graphics-processing-unit(GPU)clusters are difficult to use for real-time electroholography when using only a single spatial light modulator because the transfer of the computer-generated hologram data between the GPUs is bottlenecked.To overcome this bottleneck,we propose a rapid GPU packing scheme that significantly reduces the volume of the required data transfer.The proposed method uses a multi-GPU cluster system connected with a cost-effective gigabit Ethernet network.In tests,we achieved real-time electroholography of a three-dimensional(3D)video presenting a point-cloud 3D object made up of approximately 200,000 points.
基金supported by the National Basic Research Program(973)of China(No.2014CB340303)the National Natural Science Foundation of China(Nos.61502509 and 61222205)+1 种基金the Program for New Century Excellent Talents in Universitythe Fok Ying-Tong Education Foundation(No.141066)
文摘The density peak (DP) algorithm has been widely used in scientific research due to its novel and effective peak density-based clustering approach. However, the DP algorithm uses each pair of data points several times when determining cluster centers, yielding high computational complexity. In this paper, we focus on accelerating the time-consuming density peaks algorithm with a graphics processing unit (GPU). We analyze the principle of the algorithm to locate its computational bottlenecks, and evaluate its potential for parallelism. In light of our analysis, we propose an efficient parallel DP algorithm targeting on a GPU architecture and implement this parallel method with compute unified device architecture (CUDA), called the ‘CUDA-DP platform'. Specifically, we use shared memory to improve data locality, which reduces the amount of global memory access. To exploit the coalescing accessing mechanism of CPU, we convert the data structure of the CUDA-DP program from array of structures to structure of arrays. In addition, we introduce a binary search-and-sampling method to avoid sorting a large array. The results of the experiment show that CUDA-DP can achieve a 45-fold acceleration when compared to the central processing unit based density peaks implementation.
基金partially supported by the Japan Society for the Promotion of Science(JSPS)KAKENHI(Nos.18K11399 and 19H01097)the Telecommunications Advancement Foundation
文摘Computationally, the calculation of computer-generated holograms is extremely expensive, and the image quality deteriorates when reconstructing three-dimensional(3 D) holographic video from a point-cloud model comprising a huge number of object points. To solve these problems, we implement herein a spatiotemporal division multiplexing method on a cluster system with 13 GPUs connected by a gigabit Ethernet network.A performance evaluation indicates that the proposed method can realize a real-time holographic video of a3 D object comprising ~1,200,000 object points. These results demonstrate a clear 3 D holographic video at32.7 frames per second reconstructed from a 3 D object comprising 1,064,462 object points.