Melatonin and dopamine alleviate waterlogging stress in apples by recruiting beneficial endophytes to enhance physiological resilience

Melatonin and dopamine can potentially prevent waterlogging stress in apples.The current study investigated the mechanism by which melatonin and dopamine alleviate apple waterlogging stress.This study demonstrated that melatonin and dopamine alleviated waterlogging by removing reactive oxygen species(ROS),and that the nitric oxide(NO)content and nitrate reductase(NR)activity were significantly correlated.Melatonin and dopamine were also found to recruit different candidate beneficial endophytes(melatonin:Novosphingobium,Propionivibrio,and Cellvibrio;dopamine:Hydrogenophaga,Simplicispira,Methyloversatilis,Candidatus_Kaiserbacteria,and Humicola),and these endophytes were significantly and positively correlated with plant growth.Network analyses showed that melatonin and dopamine significantly affected the endophytic bacterial and fungal communities under waterlogging stress.The metabolomic results showed that melatonin and dopamine led to waterlogging resistance by upregulating the abundance of beneficial substances such as amino acids,flavonoids,coumarins,and organic acids.In addition,melatonin and dopamine regulated the physicochemical properties of the soil,which altered the endophyte community and affected plant growth.The co-occurrence network demonstrated close and complex relationships among endophytes,metabolites,soil,and the plants.Our results demonstrate that melatonin and dopamine alleviate waterlogging stress in apples by recruiting beneficial endophytes to enhance physiological resilience.This study provides new insights into how melatonin and dopamine alleviate stress and a theoretical basis for synergistic beneficial microbial resistance to waterlogging stress.

Advances in the study of waterlogging tolerance in plants

Waterlogging is one of the major abiotic stresses threatening crop yields globally.Under waterlogging stress,plants suffer from oxidative stress,heavy metal toxicity and energy deficiency,leading to metabolic disorders and growth inhibition.On the other hand,plants have evolved waterlogging-tolerance or adaptive mechanisms,including morphological changes,alternation of respiratory pathways,antioxidant protection and endogenous hormonal regulation.In this review,recent advances in studies on the effects of waterlogging stress and the mechanisms of waterlogging tolerance in plants are presented,and the genetic differences in waterlogging tolerance among plant species or genotypes within a species are illustrated.We also summarize the identified QTLs and key genes associated with waterlogging tolerance.

SiRAP2-12,a Positive Regulatory Factor,Effectively Improves the Waterlogging Tolerance of Foxtail Millet(Setaria italica)

Foxtail millet(Setaria italica)growth was inhibited because of waterlogging stress,which has caused yield reduc-tion.ERF family plays an important role to plant adversity tolerance.In our study,we obtained 19,819 differential expressed genes(DEGs)between the two treatments based on the RNA-seq sequencing of foxtail millet of water-logging stress.Furthermore,a total of 28 ERF family members were obtained,which have a complete open read-ing frame.We studied the evolution and function of SiERF family and how they affected the waterlogging tolerance.It was found that SiERF1A/B/C(GenBank ID:OR775217,OR775219,OR775218)and SiRAP2-12(GenBank ID:OR775216)have similar functions to the known waterlogging tolerance genes of other plants.Among them,the SiRAP2-12 expression was obviously significantly up-regulated in foxtail millet after 5d water-logging stress.After SiRAP2-12 was silenced,the activity of defense enzymes in millet decreased significantly.In details,superoxide dismutase(SOD),catalase(CAT)and peroxidase(POD),the osmotic regulator proline(Pro),and the activity of the anaerobic respiratory enzyme alcohol dehydrogenase(ADH)content were decreased by 78.61%,29.52%,79.95%,19.41%and 54.77%,respectively.In contrast,the relative electrical conductivity contents(REC),malondialdehyde(MDA),and hydrogen peroxide(H_(2)O_(2))of the foxtail millet subjected to virus-induced gene silencing clearly increased by 1.03-fold,36.09%,and 15.21%,respectively.The content of sodium(Na^(+))in the SiRAP2-12-silenced foxtail millet also increased,but that of potassium(K^(+))decreased.Interestingly,we found that ethylene content was significantly reduced.Further,the SiAOC1 expression,an essential gene for ethylene synthesis,was inhibited in SiRAP2-12-silenced foxtail millet after waterlogging stress.Taken together,we hypothesized that SiRAP2-12 might be a positive regulator of millet tolerance to waterlogging stress.

Responses of photosynthetic characteristics and leaf senescence in summer maize to simultaneous stresses of waterlogging and shading

A field experiment was performed to investigate the physiological mechanism of the simultaneous stresses of waterlogging and shading on leaf photosynthetic and senescence during three growth stages of summer maize.The responses of leaf gas exchange parameters and antioxidant enzyme activities of the summer maize hybrids Denghai 605(DH605)to waterlogging(W),shading(S),and their combination(W+S)for 6 days at the third leaf stage(V3),the sixth leaf stage(V6),and the tasseling stage(VT)were recorded.Shading,waterlogging,and their combination disturbed the activities of protective enzymes and increased the contents of H2O2and O-2,accelerating leaf senescence and disordering photosynthetic characteristics.Under waterlogging,shading and their combination,leaf Pn,the photo-assimilates and grain yield was decreased.The greatest reduction for waterlogging and the combined stresses occurred at V3 and that for shading stress occurred at VT.The individual and combined stresses reduced the activities of protective enzymes and inhibited photosynthesis,reducing the accumulation of photosynthetic compounds and thereby yield.Waterlogging and the combined stresses at the V3 stage showed the greatest effect on leaf photosynthetic and senescence,followed by the V6 and VT stages.The greatest effect for shading stress occurred at VT,followed by the V6 and V3 stages,and the combined influence of shading and waterlogging was greater than that of either single stress.

Identification of stable quantitative trait loci underlying waterlogging tolerance post-anthesis in common wheat(Triticum aestivum)

Waterlogging is a growing threat to wheat production in high-rainfall areas.In this study,a doubled haploid(DH) population developed from a cross between Yangmai 16(waterlogging-tolerant) and Zhongmai895(waterlogging-sensitive) was used to map quantitative trait loci(QTL) for waterlogging tolerance using a high-density 660K single-nucleotide polymorphism(SNP) array.Two experimental designs,waterlogging concrete tank(CT) and waterlogging plastic tank(PT),were used to simulate waterlogging during anthesis in five environments across three growing seasons.Waterlogging significantly decreased thousand-kernel weight(TKW) relative to non-waterlogged controls,although the degree varied across lines.Three QTL for waterlogging tolerance were identified on chromosomes 4AL,5AS,and 7DL in at least two environments.All favorable alleles were contributed by the waterlogging-tolerant parent Yangmai16.QWTC.caas-4AL exhibited pleiotropic effects on both enhancing waterlogging tolerance and decreasing plant height.Six high-confidence genes were annotated within the QTL interval.The combined effects of QWTC.caas-4AL and QWTC.caas-5AS greatly improved waterlogging tolerance,while the combined effects of all three identified QTL(QWTC.caas-4AL,QWTC.caas-5AS,and QWTC.caas-7DL) exhibited the most significant effect on waterlogging tolerance.Breeder-friendly kompetitive allele-specific PCR(KASP) markers(K_AX_111523809,K_AX_108971224,and K_AX_110553316) flanking the interval of QWTC.caas-4AL,QWTC.caas-5AS,and QWTC.caas-7DL were produced.These markers were tested in a collection of 240 wheat accessions,and three superior polymorphisms of the markers distributed over 67elite cultivars in the test population,from the Chinese provinces of Jiangsu,Anhui,and Hubei.The three KASP markers could be used for marker-assisted selection(MAS) to improve waterlogging tolerance in wheat.

Pore Characteristic Design Method of High-strength Pervious Concrete Based on the Mechanical Properties and Rainstorm Waterlogging Resistance

High-strength pervious concrete(HSPC) with porosity ranging from 0.08% to 2.011% was prepared. The mechanical properties and rainstorm waterlogging resistance of HSPC were evaluated,and a design method of HSPC pore characteristics(porosity and pore diameter) based on the mechanical properties and rainstorm waterlogging resistance was proposed. The results showed that the reduction of effective cross-sectional area caused by artificial channels was the main factor affecting flexural strength but had limited influence on compressive strength. Compared with the concrete matrix without artificial channels,the compressive strength of HSPC with porosity of 2.011% decreased by 7.4%, while the flexural strength decreased by 48.3%. The permeability coefficient of HSPC can reach 16.35 mm/s even at low porosity(2.011%).HSPC can meet the requirements of no rainstorm waterlogging, even if exposed to 100-year rainstorms. When the mechanical properties and rainstorm waterlogging resistance are compromised, the recommended porosity ranges from 1.1% to 3.5%, and the recommended pore diameter ranges from 0.8 to 2.7 mm.

Effect of Fatigue Loading on the Mechanical Properties and Resistance of High-strength Straight-hole Recycled Pervious Concrete to Rainstorm-based Waterlogging

A novel high-strength straight-hole recycled pervious concrete(HSRPC)for the secondary highway pavement was prepared in this paper.This study aimed to investigate the effect of porosity(0.126%,0.502%,and 1.13%),vehicle loading stress level(0.5 and 0.8)and service life on the resistance to rainstormbased waterlogging of HSRPC under fatigue loading.The mechanical properties of HSRPC in terms of flexural strength and dynamic elastic modulus were studied.The waterlogging resistance of HSRPC was described by surface water depth and drainage time.The microstructure of HSRPC were observed with scanning electron microscopy(SEM).Results showed that although the dynamic elastic modulus and flexural strength of HSRPC decreased with the increasing number of fatigue loading,the flexural strength of HSRPC was still greater than5 MPa after design service life of 20 years.After 2.5×10^(5)times of fatigue loading,the permeability coefficient of HSRPC with a porosity of 0.502%and 1.13%increased by 18.4%and 22.9%,respectively;while the permeability coefficient of HSRPC with 0.126%porosity dropped to 0.35 mm/s.The maximum surface water depth of HSRPC with a porosity of 0.126%,0.502%,and 1.13%were 8,5 and 4 mm,respectively.SEM results showed that fatigue loading expanded the number and width of cracks around the tiny pores in HSRPC.

Enhancing waterlogging tolerance in cotton through agronomic practices

Recent publications have highlighted significant progress in utilizing agronomic interventions to alleviate waterlogging stress in cotton production.Based on these advancements,we provide a concise comment on the effects and underlying mechanisms of various strategies such as utilizing stress-tolerant cotton varieties,applying nitric oxide(NO),and implementing ridge intertillage.Finally,we recommend a combination of measures to enhance cotton’s ability to withstand waterlogging and reduce yield losses.

Improvement of the Hydroponic Growth and Waterlogging Tolerance of Petunias by the Introduction of vhb Gene

The coding sequence of Vitreoscilla hemoglobin (vhb) was cloned with PCR technique from Vitreoscilla stercoraria Pringsheim. The plant expression vector with vhb gene under the control of CaMV 35S promoter was constructed and used in the transformation of Petunia hybrida Vilm by the Agrobacterium mediated procedure. The results of PCR amplification and Southern hybridization indicated that the vhb gene had been integrated into the petunia genome and the vhb gene expression had been detected by RT-PCR amplification. In hydroponic culture the transgenic petunias grew much better than non-transgenic controls. For further analysis of hypoxia tolerance of transgenic petunia, the petunia plants with vhb gene were submerged into liquid MS medium. The transgenic plants survived in hypoxic condition and grew out of the liquid surface in a few weeks, while non-transgenic plants were still submerged and suffocated in culture solution without ability to grow out of liquid medium in submersed culture for four to five weeks. The vhb gene transformed petunia plants had been planted and tested in a simulated flooding condition, and showed obvious tolerance to water-logging. It seen is that hemoglobin gene from Vitreoscilla might have the potential use in molecular breeding for the improvement of plant resistance to hypoxia and flooding.

The Waterlogging Tolerance of Cut Rose by Field Observation and Variety Selection in Sanya

[Objective] The aim was to master waterlogging tolerance of cut rose vari-eties, and provided technical reference for promoting cut rose largely. [Method] Based on natural rainfal information from July to October in Sanya, comprehensive performance of 22 varieties were observed in two consecutive years to analyze wa-terlogging tolerance ability of cut rose at waterlogging disaster. [Result] The mortality rates of Diana, Black Magic, Eric Red and Vendela were over 15%, and Diana ’s was 25.7%. Carola, Rouge Meil and, Perfume white, Lovers ’ Meeting, Choice, Tineke, Vendela, Marina, Samantha, Golden Emblem, Asagumo, Pink Fan and Dou-ble Delight grew better and recovered quickly after the disaster, with waterlogging tolerance. [Conclusion] The waterlogging tolerance of Carola, Rouge Meil and, My Choice, Tineke, Vendela, Marina, Samantha, Golden Emblem, Asagumo, Pink Fan and Double Delight was the best, which is also true for their comprehensive perfor-mances. But the waterlogging tolerance of other major cultivars such as Black Magic, Movie Star, Tineke and Vendela was poorer.

Effects of Waterlogging in Different Growth Stages on Nitrogen Uptake, Distribution, and Utilization of Cotton

[Objective] This study aimed to investigate the effects of waterlogging in different growth stages on nitrogen （N） uptake, distribution, and utilization of cotton. [Method] A pool-culture experiment in field was conducted to investigate the effects of wateriogging through comparing WL1 （waterlogging at peak squaring stage） and WL2 （waterlogging at flowering and boll-forming stage） treatments with their controls respectively. [Result] The results showed that the effect of WL1 on N uptake of cotton root was stronger than WL2. At 20 days （d） after WL1 treatment, the root biomass （RB）, N uptake （NU）, and N uptake rate （NUR） significantly decreased by 38.1%, 48.6%, and 53.0% respectively. At 20 d after WL2 treatment, the RB, NU, and NUR significantly decreased by 27.3%, 46.0%, and 44.8% respectively. More N was distributed to root and leaf after WL1 treatment, and to square, flower, and boll after WL2 treatment. N physiological use efficiency increased by 11.4% and 44.4% after WL1 and WL2 treatments respectively. Further analysis showed that the effects of WL1 on yield and its components of cotton were stronger than WL2. The boll number, boll weight, and lint yield per plant significantly reduced by 40.5%, 12.4%, and 49.5% after WL1 treatment, and significantly decreased by 23.1%, 6.9%, and 29.9% after WL2 treatment, respectively. [Conclusion] The negative effects of water- logging at peak squaring stage on N nutrition and yield of cotton were stronger than waterlogging at flowering and boll-forming stage, indicating that more attention should be paid to waterlogging at peak squaring stage and sound N management can improve cotton regrowth and reduce yield loss after waterlogging.

Monitoring Perennial Sub-Surface Waterlogged Croplands Based on MODIS in Jianghan Plain, Middle Reaches of the Yangtze River

Perennial waterlogged soil（PWS） is induced by the high level of groundwater, and has a persistent impact on natural ecosystems and agricultural production. Traditionally, distribution information regarding PWS is mainly collected from in situ measurements through groundwater level surveys and physicochemical property analyses. However, in situ measurements of PWS are costly and time-consuming, only rough estimates of PWS areas are available in some regions. In this paper, we developed a method to monitor the perennial waterlogged cropland using time-series moderate resolution imaging spectroradiometer（MODIS） data. The Jianghan Plain, a floodplain located in the middle reaches of the Yangtze River, was selected as the study area. Temporal variations of the enhanced vegetation index（EVI）, night land surface temperature（LST）, diurnal LST differences（ΔLST）, albedo, and the apparent thermal inertia（ATI） were used to analyze the ecological and thermodynamic characteristics of the waterlogged croplands. To obtain pure remote sensing signatures of the waterlogged cropland from mixed pixels, the croplands were classified into different types according to soil and land cover types in this paper, and a linear mixing model was developed by fitting the signatures using the multiple linear regression approach. Afterwards, another linear spectral mixing model was used to get the proportions of waterlogged croplands in each 1 km×1 km pixel. The result showed an acceptable accuracy with a root-mean-square error of 0.093. As a tentative method, the procedure described in this paper works efficiently as a method to monitor the spatial patterns of perennial sub-surface waterlogged croplands at a wide scale.

Changes of Physiological Characters of Wheat After Water-logging at Booting and Relations Between Physiological Characters and Waterlogging Tolerance

Effects of waterlogging on some physiological characters and relationship between waterlogging tolerance and some characters of their own were studied by using 12 varieties of wheat. Results showed waterlogging made the content of malondialdehyde in flag leaf increase, made the root vigor, the content of chlorophyll, the net photosynthesis rate, the nitrate reductase activity, the relative water content of flag leaf decrease, the content of organic matter change obviously, and then the yield per plant declined. The correlations

Effects of Waterlogging Stress on Growth and Physiological Index in Cucumber Seedlings

The effects of waterlogging stress on the growth, chlorophyll and MDA content of cucumber seedlings were studied by using cucumber varieties （Cucumis sativus L. cv. Jinyan No.7） as materials. The results show that plant height, leaf number, shoot fresh weight, total root length, total projected area and total surface area of cucumber seedlings showed insignificant differences with those of the control; root fresh weight, root average diameter, total root volume were significantly higher, but the number of root tips and furcation number increased first and then reduced; the chlorophyll content of cucumber seedlings was significantly lower than that of control; MDA content was significantly higher than that of control under waterlogging stress. It was showed that the cucumber was tolerant to waterlogging stress, but the ability of waterlogging stress was limited, and the physiological was significantly hurt and photosynthesis of cucumber seedlings was significantly affected by waterlogging stress.

Preliminary Study on the Waterlogging Tolerance of 116 Corn Materials

Maize is one of the most important food crops in the world.With the global warming,waterlogging stress has become an important abiotic stress factor that affects crop growth,including maize.Waterlogging seriously affects 10%of the arable land and can lead to a 15%-80%reduction in crop yield[1].In this study,115 inbred line materials commonly used in spring maize planting areas in the Jianghan Plain,Hubei,and maize inbred line B73 with complete genome information,were collected and stressed by waterlogging for two weeks in the seven-leaf and one-heart stage,and the survival rate was statistically compared and analyzed,aiming to screen germplasms with strong waterlogging tolerance for the genetic improvement of waterlogging tolerance of Hubei maize lines.

Changes of Antioxidative Enzymes and Lipid Peroxidation in Leaves and Roots of Waterlogging-Tolerant and Waterlogging-Sensitive Maize Genotypes at Seedling Stage

To better understand the physiological and biochemical mechanisms of waterlogging tolerance, waterlogging effects on lipid peroxidation and the activity of antioxidative enzymes were investigated in leaves and roots of two maize genotypes, HZ32 （waterlogging-tolerant） and K12 （waterlogging-sensitive）. Potted maize plants were waterlogged at the second leaf stage under glasshouse conditions. Leaves and roots were harvested 1 d before and 2, 4, 6, 8 and 10 d after the start of waterlogging treatment. Through comparing the activities of superoxide dismutase （SOD）, ascorbate peroxidase （APX）, glutathione reductase （GR）, catalase （CAT） and guaiacol peroxidase （POD） between waterlogging-tolerant and waterloggingsensitive genotype, we deduced that CAT was the most important H2O2 scavenging enzyme in leaves, while APX seemed to play a key role in roots. POD, APX, GR and CAT activities in conjunction with SOD seem to play an essential protective role in the O2^- and H2O2 scavenging process. Lipid peroxidation was enhanced significantly only in K12 （P 〈 0.001） and there was no difference （P 〉 0.05） in HZ32 up to 6 d after waterlogging stress. These results indicated that oxidative stress may play an important role in waterlogging-stressed maize plants and that the greater protection of HZ32 leaves and roots from waterlogging-induced oxidative damage results, at least in part, through the maintenance of increased antioxidant enzyme activity.

Effects of urea mixed with nitrapyrin on leaf photosynthetic and senescence characteristics of summer maize(Zea mays L.)waterlogged in the field

Waterlogging is one of the major abiotic stresses in agricultural crop production.However,the application of 2-chloro-6-(trichloromethyl)pyridine(nitrapyrin)can effectually mitigate the losses of nitrogen efficiency and grain yield of summer maize induced by waterlogging.In order to explore its role to alleviate waterlogging stress on leaf antioxidative system and photosynthetic characteristics of summer maize,a field experiment was executed to research effects of nitrapyrin application on leaf photosynthetic and senescent characteristics of waterlogged summer maize Denghai 605(DH605)and Zhengdan 958(ZD958).Experimental treatments consisted of waterlogging treatment that was applying only urea(WL),waterlogging treatment that was applying urea mixing with nitrapyrin(WL-N),and no waterlogging treatment that was only applying urea(NWL).Results showed that WL significantly decreased leaf area index(LAI),SPAD,photosynthetic rate(Pn),and protective enzyme activities,accelerated leaf aging,eventually led to a remarkable yield reduction by 38 and 42%for DH605 and ZD958,respectively,compared to NWL.However,the application of nitrapyrin was useful for relieving waterlogging damages on leaf photosynthetic ability.LAI,SPAD and Pn of WL-N for DH605 were 10,19 and 12-24%higher,and for ZD958 were 12,23 and 7-25%higher,compared to those of WL,respectively.Moreover,application of nitrapyrin effectually relieved waterlogging losses on antioxidative enzyme activities.Leaf superoxide dismutase(SOD),peroxidase(POD)and catalase(CAT)activities of WL-N were averagely increased by 24,15 and 30%,respectively,while malondialdehyde(MDA)content was averagely decreased by 13%,compared to those of WL.Visibly,nitrapyrin application could improve leaf photosynthetic characteristics and retard leaf aging induced by waterlogging,thereby leading to a yield increase of waterlogged maize.

QTLs for Waterlogging Tolerance at Germination and Seedling Stages in Population of Recombinant Inbred Lines Derived from a Cross Between Synthetic and Cultivated Wheat Genotypes

Waterlogging is a widespread limiting factor for wheat production throughout the world. To identify quantitative trait loci （QTLs） associated with waterlogging tolerance at early stages of growth, survival rate （SR）, germination rate index （GRI）, leaf chlorophyll content index （CCI）, root length index （RLI）, plant height index （PHI）, root dry weight index （RDWI）, shoot dry weight index （SDWI）, and total dry weight index （DWI） were assessed using the International Triticeae Mapping Initiative （ITMI） population W7984/Opata85. Significant and positive correlations were detected for all traits in this population except RLI. A total of 32 QTLs were associated with waterlogging tolerance on all chromosomes except 3A, 3D, 4B, 5A, 5D, 6A, and 6D. Some of the QTLs explained large proportions of the phenotypic variance. One of these is the QTL for GRI on 7A, which explained 23.92% of the phenotypic variation. Of them, 22 alleles from the synthetic hexaploid wheat W7984 contributed positively. These results suggested that synthetic hexaploid wheat W7984 is an important genetic resource for waterlogging tolerance in wheat. These alleles conferring waterlogging tolerance at early stages of growth in wheat could be utilized in wheat breeding for improving waterlogging tolerance.

Effect of Waterlogged and Aerobic Incubation on Enzyme Activities in Paddy Soil

An incubation experiment with soil water content treatments of 0.15 （W1）, 0.20 （W2）, and 0.40 （W3） g g^-1 soil was carried out for two months to investigate the activities of important enzymes involved in C, N, P, and S cycling in a paddy soil from the Taihu Lake region, China, under waterlogged and aerobic conditions. Compared with air-dried soil, waterlogging resulted in a significant decrease （P ≤ 0.05） of fluorescein diacetate （FDA） and /3-D-glucosidase activities, and this effect was enhanced with increasing waterlogging time. Waterlogging also significantly inhibited （P ≤ 0.05） arylsulfatase as well as alkaline and acid phosphatase activities, but did not decrease the activities with the increase in waterlogging time. Short-term waterlogging did not affect urease activity, but prolonged waterlogging decreased it markedly. In contrast, the aerobic incubation （W1 and W2 treatments） significantly increased （P ≤ 0.05） FDA, alkaline phosphatase, and /3-D-glucosidase activities. With aerobic treatments the activities of FDA and alkaline phosphatase increased with incubation time, whereas /3-D-glucosidase activity decreased. A significant difference （P ≤ 0.05） was usually observed between the W1 and W2 treatments for the activities of FDA as well as alkaline and acid phosphatase; however,/3-D-glucosidase and urease were usually not significant （P ≤ 0.05）. No activity differences were observed between waterlogging and aerobic incubation for arylsulfatase and urease.

Comparison of transcriptomes undergoing waterlogging at the seedling stage between tolerant and sensitive varieties of Brassica napus L.

RNA sequencing of the sensitive GH01 variety of Brassica napus L. seedling roots under 12 h of waterlogging was compared with previously published data of the ZS9 tolerant variety to unravel genetic mechanisms of waterlogging tolerance beyond natural variation. A total of 2 977 genes with similar expression patterns and 17 genes with opposite expression patterns were identiifed in the transcription proifles of ZS9 and GH01. An additional 1 438 genes in ZS9 and 1 861 genes in GH01 showed strain speciifc regulation. Analysis of the overlapped genes between ZS9 and GH01 revealed that waterlogging tolerance is determined by ability to regulate genes with similar expression patterns. Moreover, differences in both gene expression proifles and abscisic acid (ABA) contents between the two varieties suggest that ABA may play some role in waterlogging tolerance. This study identiifes a subset of candidate genes for further functional analysis.