Stand Structure, Diversity and Regeneration Status of Woody Species in Open and Exclosed Dry Woodland Sites around <i>Molapo</i>Farming Areas of the Okavango Delta, Northeastern Botswana

Stand structure, diversity and regeneration status of woody species were investigated in open and exclosed dry woodland sites in Island Safari, Shorobe and Xobe, northeastern Botswana. A total of 105, 111 and 130 quadrats, measuring 20 × 20 m each, were laid down along parallel line transects in the three sites, respectively, to collect data. A total of 47 species, representing 16 families and 24 genera, were recorded in the study sites. Of these, 33 species representing 13 families and 20 genera, 41 species representing 15 families and 23 genera and 27 species representing 10 families and 14 genera were encountered in Island Safari, Shorobe and Xobe, respectively. The most diverse family was Fabaceae followed by Combretaceae and Tiliaceae at all the three sites. The most diverse genus was Acacia, followed by Combretum and Grewia. The diversity of woody species in the study sites were 2.18, 2.15 and 1.5 in Shorobe, Island Safari and Xobe, respectively, while their corresponding evenness values were 0.6, 0.6 and 0.5, respectively. The mean densities of the woody species encountered in Island Safari, Shorobe and Xobe were 2629, 4271 and 2745 individuals ha&#451, respectively. The five densest species were Colophospermum mopane, Dichrostachys cinerea, Acacia tortilis, Philenoptera violacea and Terminalia prunioides in Island Safari, C. mopane, A. tortilis, A. erioloba, P. violacea and D. cinerea in Shorobe and Acacia mellifera, A. tortilis, P. nelsii, A. luederitzii and A. erubescens in Xobe. The highest important value index values were exhibited by C. mopane, D. cinerea, A. tortilis, P. violacea and T. prunioides in Island Safari, C. mopane, A. erioloba, A. tortilis, P. violacea and C. imberbe in Shorobe, and A. mellifera, A. tortilis, P. nelsii and A. luederitzii in Xobe. The alarming result was the fact that 71%, 80% and 85% of the woody species recorded in Island Safari, Shorobe and Xobe, respectively, exhibited hampered regeneration and, thus, unhealthy population structures. Therefore, there is an urgent need to address the observed unhealthy population structures of the woody species through investigation of the major causes of their hampered regeneration, and also designing measures that will facilitate natural and artificial regeneration of these species at the three study sites.

Distributed Relay Diversity Systems for OFDM-Based Networks

In this paper, distributed relay diversity systems are analyzed, modeled and evaluated in an Orthogonal Frequency Division Multiplexing (OFDM) based networks. The investigated distributed relay diversity schemes extend the ideas of a single hop transmit antenna schemes such as Cyclic Delay Diversity (CDD), Space Time Transmit Diversity (STTD), transmit Coherent Combining (CC) and Selection Diversity (SD) to distributed diversity systems. In contrast to the classical single hop system, the antennas in the distributed systems belongs to distributed relays instead of being co-located at the transmitter. The distributed relay diversity methods considered in this paper: Relay CDD (RCDD), Relay Alamouti (i.e.STTD), Relay CC (RCC) and Relay SD (RSD) are compared to the traditional 1-hop system. Analytical expressions for the received Signal to Interference Noise Ratio (SINR) are derived and used in a dynamic multi-cell multi-user simulator. Results show considerable SINR gains for both Round Robin and Max-SINR schedulers. The SINR gains translate into substantial cell throughput gains, up to 200%, compared to 1-hop systems. Despite its low complexity, the RCDD scheme has similar performance to that of other more sophisticated 2-hop schemes such as Relay Alamouti and Relay Coherent Combining. Marginally better results are observed for the Relay Selection Diversity scheme.

Abiotic and biotic drivers of species diversity in understory layers of cold temperate coniferous forests in North China

Understory plants are important components of forest ecosystems and play a crucial role in regulating community structures,function realization,and community succession.However,little is known about how abiotic and biotic drivers affect the diversity of understory species in cold temperate coniferous forests in the semiarid climate region of North China.We hypothesized that(1)topographic factors are important environmental factors affecting the distribution and variation of understory strata,and(2)different understory strata respond differently to environmental factors;shrubs may be significantly affected by the overstory stratum,and herbs may be more affected by surface soil conditions.To test these hypotheses,we used the boosted regression tree method to analyze abiotic and biotic environmental factors that influence understory species diversity,using data from 280 subplots across 56 sites in cold temperate coniferous forests of North China.Elevation and slope aspect were the dominant and indirect abiotic drivers affecting understory species diversity,and individual tree size inequality(DBH variation)was the dominant biotic driver of understory species diversity;soil water content was the main edaphic factors affecting herb layers.Elevation,slope aspect,and DBH variation accounted for 36.4,14.5,and 12.1%,respectively,of shrub stratum diversity.Shrub diversity decreased with elevation within the range of altitude of this study,but increased with DBH variation;shrub diversity was highest on north-oriented slopes.The strongest factor affecting herb stratum species diversity was slope aspect,accounting for 25.9%of the diversity,followed by elevation(15.7%),slope(12.2%),and soil water content(10.3%).The highest herb diversity was found on southeast-oriented slopes and the lowest on northeast-oriented slopes;herb diversity decreased with elevation and soil water content,but increased with slope.The results of the study provide a reference for scientific management and biodiversity protection in cold temperate coniferous forests of North China.

Genetic Diversity and Species Identification of Cultivar Species in Subtribe Cucumerinae (Cucurbitaceae) Using RAPD and SCAR Markers

DNA polymorphism in the cultivar species;Cucumis sativus L., C. melo L. and Benincasa hispida Cogn. of subtribe Cucumerinae (Cucurbitaceae) in the four northeastern provinces of Thailand was examined by using RAPD technique. Twenty 10-mer primers were produced 212 RAPD fragments, ranging from approximately 120 to 2531 bp. The genetic similarities were estimated from banding profiles using a NTSYS* version 2.1 as a basis for dendrogram construction via the UPGMA method. Cluster analysis divided the taxa under study into 2 clades. Moreover, a RAPD marker: Cm (OPJ11700) was specified to C. melo, and this marker was converted into sequence characterized amplified region (SCAR) marker: Cm (SCJ11516). A pair of sequence-specific primer of clones Cm (OPJ11700) amplified a distinct single band of the same size as the RAPD clones. The SCAR marker was developed successfully to identify C. melo genotype.

Genetic Diversity and Correlation Studies for Cotton Leaf Curl Disease (CLCuD), Fiber &Yield Related Attributes in Exotic Lines of <i>Gossypium arboreum</i>L.

Genetic diversity provides the foundation for crop improvement. Genetic variation and associations among Cotton Leaf Curl Disease (CLCuD), fiber and yield related traits were investigated in exotic lines of Gossypium arboreum L. in an experimental field at the Central Cotton Research Institute (CCRI), Multan, Pakistan during the crop season 2011-12. One hundred and nineteen (119) accessions imported from USA through the Pakistan and US “Cotton Productivity Enhancement Program” (CPEP), were evaluated in this study. Various statistical approaches including descriptive statistics, correlation and principal component analysis was performed to evaluate and identify desirable genotypes. Results revealed that seed cotton yield was significantly and positively correlated with boll weight and number of bolls plant-1. Similarly, plant height was also significantly correlated with sympodial branches, lint percentage and micronaire value. Lint percentage showed a highly significant and positive correlation with plant height, sympodial branches and micronaire value. With respect to fiber traits, negative and significant relationships were observed between the micronaire value (MIC) and fiber strength. CLCuD showed no relationship with any of the studied traits, as all the G. arboreum L. lines evaluated were scored resistant to CLCuD. Principal component analysis (PCA) showed that the first four out of 11 components contributed about 65.88% of the total variation having an eigen value greater than 1. Based on PCA, the genotypes GS-4, GS-9, GS-8, GS-55 and GS-50 could be utilized successfully in a future breeding program based on having the highest positive loading factor for staple length (0.135) in PC1 and seed cotton yield (0.625), number of bolls plant-1, boll weight, first sympodial nod, staple length and fiber strength in PC2 respectively.

Diversity Analysis on the Plant Communities of Urban Park Green Space in Wuhan

In order to systematically study the diversity of plant communities in park green space,78 plant communities of 10 representative parks in Wuhan City were investigated.The total 449 species belonging to 275 genera and 112 families were found in this investigation.The communities were divided into 35 dominant-species,13 life-forms and 6 vegetation-forms.The community structures and the composition of dominant species were also studied.The results showed that the shortages of the low diversity,high proportion of exotic species and simple community structures appeared in plant community of park green space in Wuhan City.It is proposed that species,especially native ones,should be abundant to keep a high level species diversity.At the same time,more simulated native communities should be utilized to build the natural,multi-layers,bright local vegetation characteristics landscape of urban parks.

Biodiversity metrics on ecological networks: Demonstrated with animal gastrointestinal microbiomes

Biodiversity has become a terminology familiar to virtually every citizen in modern societies.It is said that ecology studies the economy of nature,and economy studies the ecology of humans;then measuring biodiversity should be similar with measuring national wealth.Indeed,there have been many parallels between ecology and economics,actually beyond analogies.For example,arguably the second most widely used biodiversity metric,Simpson(1949)’s diversity index,is a function of familiar Gini-index in economics.One of the biggest challenges has been the high“diversity”of diversity indexes due to their excessive“speciation”-there are so many indexes,similar to each country’s sovereign currency-leaving confused diversity practitioners in dilemma.In 1973,Hill introduced the concept of“numbers equivalent”,which is based on Renyi entropy and originated in economics,but possibly due to his abstruse interpretation of the concept,his message was not widely received by ecologists until nearly four decades later.What Hill suggested was similar to link the US dollar to gold at the rate of$35 per ounce under the Bretton Woods system.The Hill numbers now are considered most appropriate biodiversity metrics system,unifying Shannon,Simpson and other diversity indexes.Here,we approach to another paradigmatic shift-measuring biodiversity on ecological networks-demonstrated with animal gastrointestinal microbiomes representing four major invertebrate classes and all six vertebrate classes.The network diversity can reveal the diversity of species interactions,which is a necessary step for understanding the spatial and temporal structures and dynamics of biodiversity across environmental gradients.

Effects of long-term warming on the aboveground biomass and species diversity in an alpine meadow on the Qinghai-Tibetan Plateau of China

Ecosystems in high-altitude regions are more sensitive and respond more rapidly than other ecosystems to global climate warming.The Qinghai-Tibet Plateau(QTP)of China is an ecologically fragile zone that is sensitive to global climate warming.It is of great importance to study the changes in aboveground biomass and species diversity of alpine meadows on the QTP under predicted future climate warming.In this study,we selected an alpine meadow on the QTP as the study object and used infrared radiators as the warming device for a simulation experiment over eight years(2011-2018).We then analyzed the dynamic changes in aboveground biomass and species diversity of the alpine meadow at different time scales,including an early stage of warming(2011-2013)and a late stage of warming(2016-2018),in order to explore the response of alpine meadows to short-term(three years)and long-term warming(eight years).The results showed that the short-term warming increased air temperature by 0.31℃and decreased relative humidity by 2.54%,resulting in the air being warmer and drier.The long-term warming increased air temperature and relative humidity by 0.19℃and 1.47%,respectively,and the air tended to be warmer and wetter.The short-term warming increased soil temperature by 2.44℃and decreased soil moisture by 12.47%,whereas the long-term warming increased soil temperature by 1.76℃and decreased soil moisture by 9.90%.This caused the shallow soil layer to become warmer and drier under both short-term and long-term warming.Furthermore,the degree of soil drought was alleviated with increased warming duration.Under the long-term warming,the importance value and aboveground biomass of plants in different families changed.The importance values of grasses and sedges decreased by 47.56%and 3.67%,respectively,while the importance value of weeds increased by 1.37%.Aboveground biomass of grasses decreased by 36.55%,while those of sedges and weeds increased by 8.09%and 15.24%,respectively.The increase in temperature had a non-significant effect on species diversity.The species diversity indices increased at the early stage of warming and decreased at the late stage of warming,but none of them reached significant levels(P>0.05).Species diversity had no significant correlation with soil temperature and soil moisture under both short-term and long-term warming.Soil temperature and aboveground biomass were positively correlated in the control plots(P=0.014),but negatively correlated under the long-term warming(P=0.013).Therefore,eight years of warming aggravated drought in the shallow soil layer,which is beneficial for the growth of weeds but not for the growth of grasses.Warming changed the structure of alpine meadow communities and had a certain impact on the community species diversity.Our studies have great significance for the protection and effective utilization of alpine vegetation,as well as for the prevention of grassland degradation or desertification in high-altitude regions.

Effect of Application of Vermicompost and Conventional Compost Derived from Different Residues on Pea Crop Production and Soil Faunal Diversity in Agricultural System in Garhwal Himalayas India

Sedentary crop-livestock mixed farming is the predominant agricultural land use in Central Himalaya upland and largely rainfed;agrochemicals are not used at all. Farmers focus on increasing yields with poor soil fertility management practices resulted in sharp decline in production of pea crop in the study site. Therefore in present study options are being looked into devising some conservation strategies that increase yields of pea while reducing harm to soil biodiversity at a local scale here. The present study explores the efficiency of P. excavatus as endemic earthworm species for vermicomposting, the potential utilization of Conventional oak based farmyard manure (FM-O);Conventional pine based farmyard manure(FM-P);Earthworm fed ? Cow dung + oak leaves based vermicompost (VC-O);Earthworm fed ? Cow dung + pine leaves based vermicompost (VC-P);freshly fallen leaf litter (LM) on pea crop productivity and soil faunal diversity in agricultural system, and if the changed soil faunal biodiversity scenario in any way affected the crop production. The higher uptake of nitrogen, higher germination percentage enhanced seedling growth, early emergence flower, increase number of pods, seed, husk , and root biomass was significantly higher in plants which received VC-O followed by VC-P as manure input treatments. The change in the diversity of soil micro arthropods in relation to quality change in organic residues input in experimental plots and expressed as the Simpsons diversity index showed that the diversity of soil fauna is related to improvements in soil conditions resulting from nutrient manipulations through vermicompost and conventional compost treatments. This response of soil biota to increased production most likely represents an increase in the availability of resources through addition of vermicompost when compared to other compost treatments. Alternatively, an increase in predators and therefore predation, could, increase the diversity of its prey, thereby decreasing dominant competitors and reducing the possibility of competitive exclusion, but this needs further studies. Chronosequence study during cropping season indicated that the composition and abundance of soil fauna in agricultural fields changed considerably with time under cultivation. This technology has now been adopted by the farmers in the area once again for growing the pea crop.

Relationship between Plant Species Diversity and Plant Biomass of Orchard Grass and Lucerne Sown in Different Ratios in the Province of Salamanca, Spain

A field experiment was carried out at the CSIC Mu&#241ovela farm belonging to the Spanish National Research Council (CSIC) in order to evaluate the effect of sowing orchard grass (Dactylis glomerata var. Trerano) and lucerne (Medicago sativa var. Aragon) in monoculture and in combination. The experiment was based on a randomized block designed with a factorial arrangement (5 × 2). Experimental units were 40 plots distributed in four blocks. The phosphorus fertilization (P) factor included two types of conditions: basal fertilization without phosphorus (-P) and basal fertilization with phosphorus (+P), and the vegetation cover factor (T) included five conditions depending on the grass (G) and the legume (L). Above-ground biomass showed statistically significant differences among seasons and years (P Lolium perenne L. and Poa pratensis L. throughout the three years indicated that both species significantly increased their presence over time regardless of the treatments applied. The analysis performed for the other plant species (those other than grasses and legumes) allowed us to determine that the T1 and T5 treatments, which correspond to single species not treated with the application of phosphorus, influenced the presence of 70% of other species planted. Our specific aim was to explore how changing plant biotic diversity affects productivity under a given set of conditions. We manipulated plant species richness as an experimental factor to determine if productivity would be affected by changes in the ratios of plants sown.

Forest biodiversity, relationships to structural and functional attributes, and stability in New England forests

Background： Forest biodiversity is the foundation of many ecosystem services, and the effect of biodiversity on ecosystem functioning and processes （BEF） has been a central issue in biodiversity studies. Although many hypotheses have been developed to interpret global gradients of biodiversity, there has not been complete agreement on mechanisms controlling biodiversity patterns and distributions. Differences may be due to limited observation data and inconsistencies of spatial scales in analysis. Methods： In this study, we take advantage of USDA Forest Service forest inventory and analysis （FIA） data for exploring regional forest biodiversity and BEF in New England forests. The FIA data provide detailed information of sampled plots and trees for the region, including 6000 FIA plots and more than 33,000 individual trees. Biodiversity models were used to analyze the data. Results： Tree species diversity increases from the north to the south at a rate about 2-3 species per latitudinal degree. Tree species diversity is better predicted by tree height than forest age or biomass. Very different distribution patterns of two common maple species, sugar maple （Acer sdcchorum） and red maple （Acer rubrum）, highlight the vulnerability of sugar maple and its potential replacement by red maple on New England landscapes. Red maple generally already outperforms sugar maple, and will likely and continuously benefit from a changing climate in New England. Conclusions： We conclude that forest structure （height） and resources （biomass） are more likely foundational characteristics supporting biodiversity rather than biodiversity determining forest productivity and/or biomass. The potential replacement of red maple for sugar maple in the New England areas could affect biodiversity and stability of forest ecosystem functioning because sugar maple plays important ecological roles distinct from red maple that are beneficial to other tree species in northern hardwood forests. Such a change may not affect forest resilience in terms of forest productivity and biomass as these are similar in red maple and sugar maple, however, it would almost certainly alter forest structure across the landscape.

The weighted quadratic index of biodiversity for pairs of species: a generalization of Rao’s index

The distribution of biodiversity at multiple sites of a region has been traditionally investigated through the additive partitioning of the regional biodiversity, called γ-diversity, into the average within-site biodiversity or α-diversity, and the biodiversity among sites, or β-diversity. The standard additive partitioning of diversity requires the use of a measure of diversity which is a concave function of the relative abundance of species, like the Shannon entropy or the Gini- Simpson index, for instance. When a phylogenetic distance between species is also taken into account, Rao’s quadratic index has been used as a measure of dissimilarity. Rao’s index, however, is not a concave function of the distribution of relative abundance of either individual species or pairs of species and, consequently, only some nonstandard additive partitionings of diversity have been given using this index. The objective of this paper is to show that the weighted quadratic index of biodiversity, a generalization of the weighted Gini-Simpson index to the pairs of species, is a concave function of the joint distribution of the relative abundance of pairs of species and, therefore, may be used in the standard additive partitioning of diversity instead of Rao’s index. The replication property of this new measure is also discussed.

No generality in biodiversity-productivity relationships along elevation in temperate and subtropical forest landscapes

An improved understanding of biodiversity-productivity relationships(BPRs)along environmental gradients is crucial for effective ecosystem management and biodiversity conservation.The stress-gradient hypothesis suggests that BPRs are stronger in stressful environments compared to more favorable conditions.However,there is limited knowledge regarding the variation of BPRs along elevational gradients and their generality across different landscapes.To study how BPRs change with elevation,we harnessed inventory data on 6,431 trees from152 plots surveyed twice in eight to ten year intervals in mountain forests of temperate Europe and subtropical Asia.We quantified the relationship between aboveground productivity and different biodiversity measures,including taxonomic,functional,and phylogenetic diversity.To elucidate the processes underlying BPRs,we studied the variation of different functional traits along elevation across landscapes.We found no general pattern of BPRs across landscapes and elevations.Relationships were neutral for all biodiversity measures in temperate forests,and negative for taxonomic and functional diversity in subtropical forests.BPRs were largely congruent between taxonomic,functional and phylogenetic diversity.We found only weak support for the stress-gradient hypothesis,with BPRs turning from negative to positive(effect not significant)close to the tree line in subtropical forests.In temperate forests,however,elevation patterns were strongly modulated by species identity effects as influenced by specific traits.The effect of traits such as community-weighted mean of maximum plant height and wood density on productivity was congruent across landscapes.Our study highlights the context-dependence of BPRs across elevation gradients and landscapes.Species traits are key modulating factors of BPRs and should be considered more explicitly in studies of the functional role of biodiversity.Furthermore,our findings highlight that potential trade-offs between conserving biodiversity and fostering ecosystem productivity exist,which require more attention in policy and management.

Effect of carbon and nitrogen ratio control on Artemia growth, water quality, biofloc microbial diversity under high salinity and zero-water exchange culture condition

Biofloc technology has been applied successfully in the intensive aquaculture of several fish and shrimp species. The growth of heterotrophic microorganisms can be stimulated through adding extra carbon, which reduces the nitrogen level in the water and provides microbial protein to the animals. However, most of the studies and practical applications have been conducted in freshwater and marine environment. This paper focused on brine shrimp Artemia that lives in high salinity environment together with other halophilic or halotolerant microorganisms. The effect of carbon supplementation on Artemia growth, water quality, and microbial diversity of biofl ocs was studied in the closed culture condition without any water exchange. The salinity of the culture medium was 100. A 24-d culture trial was conducted through supplementing sucrose at carbon/nitrogen (C/N) ratio of 5, 15, and 30 (Su5, Su15, and Su30), respectively. The culture without adding sucrose was used as a control. Artemia was fed formulated feed at a feeding ration of 60% recommended feeding level. The results showed that sucrose supplementation at higher C/N ratio (15 and 30) signifi cantly improved the Artemia survival, growth and water quality ( P <0.05). Addition of sucrose at C/N ratio of 15 and 30 significantly increased biofloc volume (BFV)( P <0.05). The Illumina MiSeq sequencing analysis showed that supplementing carbon at C/N ratio of 15 had a better total bacterial diversity and richness, and shaped the microbial composition at genera level. This study should provide information for studying the mechanism of biofloc technology and its application in high salinity culture conditions.

Assessment of Genetic Diversity of Drought Tolerant and Susceptible Rice Genotypes Using Microsatellite Markers

The introgression of wild chromosomal segments into popular rice varieties is one of the potential approaches for developing varieties for drought stress condition. Sixteen genotypes, including nine indica, two tropical japonica and five chromosome segments substitution lines (CSSLs) with different levels of tolerance/susceptibility to drought stress, were selected for diversity study. Sixty-three microsatellite markers were utilized for assessing genetic diversity. A total of 95 alleles were amplified, and out of them, 60 were polymorphic. Six unique alleles, amplified by the microsatellite loci RM276, RM472, RM488, RM537, RM541 and RM28089, were identified in six genotypes, namely FR13A, Brahamanakhi, RUF44, Swarna-sub1, Brahamanakhi and Satyabhama. The highest genetic similarity was found among CSSLs. Polymorphism information content (PIC) value varied from 0 to 1.00 with an average of 0.66 per locus. Twenty-eight microsatellites were found to be polymorphic, which could be used in marker-assisted selection programme. All the sixteen genotypes were grouped into two major clusters at genetic similarity of 0.64. In the cluster I, five CSSLs identified as diverse genotypes had wild ancestor segments responsible for drought tolerance, and hence they could be utilized as potential donors. The popular Indian varieties, Swarna-sub1 and IR64-sub1, could be used as recurrent parents in the future breeding program for developing varieties for abiotic stresses such as submergence and drought.

Assessment and Inventory of Forest Ecosystems Biodiversity: Case Study for Karelian Isthmus of Leningrad Region, Russia

Regular grid of permanent sample plots (PSP) of ICP-Forests monitoring system was used for forest ecosystems biodiversity assessments and inventory. The supplementary features were added to the PSP structure to conduct biological diversity census: eight sample plots 1 × 1 m for geo-botanical description;two sample plots of 5 × 5 m each for description of the PSP’s undergrowth;one 25 × 25 m plot for coarse woody debris estimations;four soil inventory pits. The total number of PSP amounted to 248. Total data used are as following: 1) 1984 geo-botanical descriptions of vegetation belonging to ground cover layers made on 1 × 1 m sample plots;2) 496 descriptions of undergrowth on 5 × 5 m sample plots;3) 178 descriptions of woody debris on 25 × 25 m sample plots;4) 496 descriptions of soil inventory pits. General statistical indicators characterizing forest land cover diversity were calculated. Statistic indicators of α-diversity for the Karelian Isthmus forest vegetation cover have the following values: 1) m (mean number of species per PSP) = 26 species;2) σ (standard deviation) = 9.5 species;3) v (variation coefficient) = 36.5%;4) Р (deviation amplitude) = 60 – 7 = 53 species. β – diversity of forest ecosystems as well as γ – diversity also was studied on the base of information collected on the same regular grid of sample plots. It appears that sample plots distribution by species diversity gradation is well described by the standard curve of normal distribution for the entire Karelian Isthmus forest (determination coefficient of the curve being 95.2%) as well as for each type of forest. Hence, the criterion (standard) of biodiversity for forest ecosystems can be defined as the mean value of alpha diversity for each forest type group – m;and the standard deviation – σ, as a tool for assessing deviations from the standard. PSP locations are fixed using GPS technology, this allows biodiversity assessments at the same place in the next years for biodiversity trends estimations and consist the frame for systematic biodiversity inventory.

Evaluation of Evolution and Diversity of Maize Open-Pollinated Varieties Cultivated under Contrasted Environmental and Farmers’ Selection Pressures: A Phenotypical Approach

OPVs (open pollinated varieties) of cross pollinated crops are genetically heterogeneous and therefore likely to evolve over generations, under natural and human selection, which gives them a strong potential for organic and low input farming. OPVs of maize were cultivated and selected by different farmers in France and Italy for 2 generations. The third year, they were phenotypically evaluated for evolution, adaptation and level of diversity (estimated with Nei index) across evolution in a combined on farm and on station experimentation. The results showed that the varieties evolved and even adapted over 2 generations only (especially on maturity traits) but conserved their identity (no evolution of ear morphological traits). They all conserved their diversity, which demonstrated the pertinence of farmers’ selection (it is not a bottleneck). These results suggested that the genetically heterogeneous nature of OPVs is an asset for farmers because they can adapt these varieties to specific local conditions and production objectives. Therefore, farmer OPVs should receive more support through social and regulatory recognition, as well as further interest from research.

Diversity of ds RNA Viruses Infecting Rice Sheath Blight Fungus Rhizoctonia solani AG-1 IA

Rice sheath blight,caused by Rhizoctonia solani(Kühn),is a notorious soil-borne disease prevalent in many rice-growing regions.Although several sporadic studies of mycoviruses in R.solani AG-1 IA have been reported for single strain of R.solani AG-1 IA,there have been no reports describing the distribution and diversity of mycoviruses in natural populations.In this study,43 R.solani AG-1 IA strains collected from different locations in China were examined for the presence of ds RNA elements to confirm the presence of viral infections.Electrophoretypes showed that 16 of the 43 fungal strains(37.2%)contained ds RNAs that can be characterized as viruses.Furthermore,the species-specific reverse transcription PCR(RT-PCR)showed ds RNA bands with similar sizes do not always contain the same virus but exist as mixed mycoviral infections.Thus,our findings indicate mycoviruses infecting R.solani AG-1 IA in China are diverse,widespread and universal.

Genetic diversity and a population structure analysis of accessions in the Chinese cowpea [Vigna unguiculata(L.)Walp.]germplasm collection

Cowpea(Vigna imguicuiata) is an important legume crop with diverse uses. The species is presently a minor crop, and evaluation of its genetic diversity has been very limited. In this study, a total of 200 genic and 100 genomic simple sequence repeat(SSR) markers were developed from cowpea unigene and genome sequences, respectively. Among them, 27 genic and 27 genomic SSR markers were polymorphic and were used for assessment of genetic diversity and population structure in 105 selected cowpea accessions. A total of 155 alleles and 2.9 alleles per marker were identified, and the average polymorphic information content(PIC) value was 0.3615. The average PIC of genomic SSRs(0.3996) was higher than that of genic SSRs(0.3235), and most of the polymorphic genomic SSRs were composed of di-and trinucleotide repeats(51.9% and 37.0% of all loci, respectively). The low level of detected genetic diversity may be attributed to a severe genetic bottleneck that occurred during the cowpea domestication process. The accessions were classified by structure and cluster analysis into four subgroups that correlated well with their geographic origins or collection sites. The classification results were also consistent with the results from principal coordinate analysis and can be used as a guide during future germplasm collection and selection of accessions as breeding materials for cultivar improvement. The newly developed genic and genomic SSR markers described in this study will be valuable genomic resources for the assessment of genetic diversity, population structure, evaluation of germplasm accessions, construction of genetic maps, identification of genes of interest,and application of marker-assisted selection in cowpea breeding programs.

Deterministic processes drive turnover-dominated beta diversity of breeding birds along the central Himalayan elevation gradient

Beta diversity,the variation of community composition among sites,bridges alpha and gamma diversity and can reveal the mechanisms of community assembly through applying distance-decay models and/or partitioning beta diversity into turnover and nestedness components from functional and phylogenetic perspectives.Mountains as the most natural experiment system provide good opportunities for exploring beta diversity patterns and the underlying ecological processes.Here,we simultaneously consider distance-decay models and multiple di-mensions of beta diversity to examine spatial variations of bird communities,and to evaluate the relative importance of niche-based and neutral community assembly mechanisms along a 3600-m elevational gradient in the central Himalayas,China.Our results showed that species turnover dominates taxonomic,functional,and phylogenetic beta diversity.We observed strongest evidence of spatial distance decays in taxonomic similarities of birds,followed by its phylogenetic and functional analogues.Turnover component was highest in taxonomic beta diversity,while nestedness component was highest in functional beta diversity.Further,all correlations of assemblage similarity with climatic distance were higher than that with spatial distances.Standardized values of overall taxonomic,functional,and phylogenetic beta diversity and their turnover components increase with increasing elevational distance,while the standardized values of taxonomic and phylogenetic nestedness decreased with increasing elevational distance.Our results highlighted the niche-based deterministic processes in shaping elevational bird diversity patterns that were determined by the relative roles of decreasing trend of environmental filtering and increasing trend of limiting similarity along elevation distances.