Objective Triple-negative breast cancer(TNBC)is the breast cancer subtype with the worst prognosis,and lacks effective therapeutic targets.Colony stimulating factors(CSFs)are cytokines that can regulate the production...Objective Triple-negative breast cancer(TNBC)is the breast cancer subtype with the worst prognosis,and lacks effective therapeutic targets.Colony stimulating factors(CSFs)are cytokines that can regulate the production of blood cells and stimulate the growth and development of immune cells,playing an important role in the malignant progression of TNBC.This article aims to construct a novel prognostic model based on the expression of colony stimulating factors-related genes(CRGs),and analyze the sensitivity of TNBC patients to immunotherapy and drug therapy.Methods We downloaded CRGs from public databases and screened for differentially expressed CRGs between normal and TNBC tissues in the TCGA-BRCA database.Through LASSO Cox regression analysis,we constructed a prognostic model and stratified TNBC patients into high-risk and low-risk groups based on the colony stimulating factors-related genes risk score(CRRS).We further analyzed the correlation between CRRS and patient prognosis,clinical features,tumor microenvironment(TME)in both high-risk and low-risk groups,and evaluated the relationship between CRRS and sensitivity to immunotherapy and drug therapy.Results We identified 842 differentially expressed CRGs in breast cancer tissues of TNBC patients and selected 13 CRGs for constructing the prognostic model.Kaplan-Meier survival curves,time-dependent receiver operating characteristic curves,and other analyses confirmed that TNBC patients with high CRRS had shorter overall survival,and the predictive ability of CRRS prognostic model was further validated using the GEO dataset.Nomogram combining clinical features confirmed that CRRS was an independent factor for the prognosis of TNBC patients.Moreover,patients in the high-risk group had lower levels of immune infiltration in the TME and were sensitive to chemotherapeutic drugs such as 5-fluorouracil,ipatasertib,and paclitaxel.Conclusion We have developed a CRRS-based prognostic model composed of 13 differentially expressed CRGs,which may serve as a useful tool for predicting the prognosis of TNBC patients and guiding clinical treatment.Moreover,the key genes within this model may represent potential molecular targets for future therapies of TNBC.展开更多
Sixteen different vegetation types of grassland and shrubland were selected to study the component and diversity of plant species of riparian plant communities along main channel in the Three-Gorges areas. Species ric...Sixteen different vegetation types of grassland and shrubland were selected to study the component and diversity of plant species of riparian plant communities along main channel in the Three-Gorges areas. Species richness (s), Simpson index (D), and Shannon-Weiner index (H) were used to study the biodiversity and the hierarchical classification was carried out by the methods of TWINSPAN and DCA ordination. The results showed that the components of flora were complex and dominated by the temperate type in the riparian plant communities. Species diversity was not different between the communities, but Shannon-Weiner indexes of different layers in some grassland were significantly different. TWINSPAN and DCA indicated that riparian plant communities distributed along the gradient of moisture.展开更多
Types and structure of plant communities in the Yellow River Delta were investigated by using detrended canonical correspondence analyses （DCCAs） and a two-way indicator species analysis （TWINSPAN）. The distributi...Types and structure of plant communities in the Yellow River Delta were investigated by using detrended canonical correspondence analyses （DCCAs） and a two-way indicator species analysis （TWINSPAN）. The distribution pattern and influential factors of the plant communities were also analyzed by testing elevation, slope, soil characteristics, longitude and latitude of 134 vegetation samples collected by representative plot sampling methods. Results showed that all the 134 vegetation samples could be divided into seven vegetation groups, separately dominated by Robinia pseucdoacacia, Imperata cylindrical, Miscanthus saccharifleus, Suaeda salsa, Aeluropus sinensis, Phragmites australis and Tamarix chinensis. The vegetation distribution pattern was mainly related to elevation, ground water depth and soil characteristics such as salinity and soluble potassium. Among the factors affecting distribution pattern of the plant communities, the species matrix explained by non-spatial environmental variation accounts for 45.2% of total variation. Spatial variation and spatial-structured environmental variation explain 11.8%, and 2.2%, respectively. Remained 40.8% of undetermined variation is attributed to biological and stochastic factors.展开更多
文摘Objective Triple-negative breast cancer(TNBC)is the breast cancer subtype with the worst prognosis,and lacks effective therapeutic targets.Colony stimulating factors(CSFs)are cytokines that can regulate the production of blood cells and stimulate the growth and development of immune cells,playing an important role in the malignant progression of TNBC.This article aims to construct a novel prognostic model based on the expression of colony stimulating factors-related genes(CRGs),and analyze the sensitivity of TNBC patients to immunotherapy and drug therapy.Methods We downloaded CRGs from public databases and screened for differentially expressed CRGs between normal and TNBC tissues in the TCGA-BRCA database.Through LASSO Cox regression analysis,we constructed a prognostic model and stratified TNBC patients into high-risk and low-risk groups based on the colony stimulating factors-related genes risk score(CRRS).We further analyzed the correlation between CRRS and patient prognosis,clinical features,tumor microenvironment(TME)in both high-risk and low-risk groups,and evaluated the relationship between CRRS and sensitivity to immunotherapy and drug therapy.Results We identified 842 differentially expressed CRGs in breast cancer tissues of TNBC patients and selected 13 CRGs for constructing the prognostic model.Kaplan-Meier survival curves,time-dependent receiver operating characteristic curves,and other analyses confirmed that TNBC patients with high CRRS had shorter overall survival,and the predictive ability of CRRS prognostic model was further validated using the GEO dataset.Nomogram combining clinical features confirmed that CRRS was an independent factor for the prognosis of TNBC patients.Moreover,patients in the high-risk group had lower levels of immune infiltration in the TME and were sensitive to chemotherapeutic drugs such as 5-fluorouracil,ipatasertib,and paclitaxel.Conclusion We have developed a CRRS-based prognostic model composed of 13 differentially expressed CRGs,which may serve as a useful tool for predicting the prognosis of TNBC patients and guiding clinical treatment.Moreover,the key genes within this model may represent potential molecular targets for future therapies of TNBC.
基金This study was supported by the Chinese Academy of Sciences (A grant KZCX2-406) the National Natural Science Foundation of China (NSFC39970123) and Changbai Mountain Open Research Station.
文摘Sixteen different vegetation types of grassland and shrubland were selected to study the component and diversity of plant species of riparian plant communities along main channel in the Three-Gorges areas. Species richness (s), Simpson index (D), and Shannon-Weiner index (H) were used to study the biodiversity and the hierarchical classification was carried out by the methods of TWINSPAN and DCA ordination. The results showed that the components of flora were complex and dominated by the temperate type in the riparian plant communities. Species diversity was not different between the communities, but Shannon-Weiner indexes of different layers in some grassland were significantly different. TWINSPAN and DCA indicated that riparian plant communities distributed along the gradient of moisture.
基金Foundation project： This study was financially supported by the Na- tional Natural Science Foundation of China （No. 40771172） and the orientation project of the Chinese Academy of Sciences （No. kzcx2-yw-308）
文摘Types and structure of plant communities in the Yellow River Delta were investigated by using detrended canonical correspondence analyses （DCCAs） and a two-way indicator species analysis （TWINSPAN）. The distribution pattern and influential factors of the plant communities were also analyzed by testing elevation, slope, soil characteristics, longitude and latitude of 134 vegetation samples collected by representative plot sampling methods. Results showed that all the 134 vegetation samples could be divided into seven vegetation groups, separately dominated by Robinia pseucdoacacia, Imperata cylindrical, Miscanthus saccharifleus, Suaeda salsa, Aeluropus sinensis, Phragmites australis and Tamarix chinensis. The vegetation distribution pattern was mainly related to elevation, ground water depth and soil characteristics such as salinity and soluble potassium. Among the factors affecting distribution pattern of the plant communities, the species matrix explained by non-spatial environmental variation accounts for 45.2% of total variation. Spatial variation and spatial-structured environmental variation explain 11.8%, and 2.2%, respectively. Remained 40.8% of undetermined variation is attributed to biological and stochastic factors.
