Lepidium meyeniiWalp. (Maca), a perennial herbaceous plant with narrow distdbution in the Andean region, was cultivated by local residents as early as 1600 B.C. It has high nutritional values and multiple medicinal ...Lepidium meyeniiWalp. (Maca), a perennial herbaceous plant with narrow distdbution in the Andean region, was cultivated by local residents as early as 1600 B.C. It has high nutritional values and multiple medicinal effects. In recent years the plant source of Maca has been greatly scarce since Maca products are increasingly becoming popular in the world. This makes the study urgent on the identification and quality evaluation of Maca materials. In present work, four Mace samples of different origins or handlings and three other natural plants, including radish, odental ginseng and American ginseng, were investigated. Their essential oils (steam distillates) of the hypogeal parts were weighed and analyzed by GC/MS. Through comparison of the characteristics of their chromatograms, it was found that the essential oil of Maca had unique GC/MS behaviors, and the characteristic peaks produced by the major essential oil components (Phenylacetonitrile, Benzaldehyde, 3-Methoxyphenylacetonitrile, etc) were distinct. Furthermore, the chromatograms of several Maca samples showed a similar qualitative pattern except for some differences in the quantitative composition, and the percentage of total essential oils in the samples varied from 0.88 % to 1.59 %. These behaviors and technologies can be applied to the identification of Maca materials in the markets and be a supplement to assess the quality of Maca matedals.展开更多
Genomic selection(GS)can be used to accelerate genetic improvement by shortening the selection interval.The successful application of GS depends largely on the accuracy of the prediction of genomic estimated breeding ...Genomic selection(GS)can be used to accelerate genetic improvement by shortening the selection interval.The successful application of GS depends largely on the accuracy of the prediction of genomic estimated breeding value(GEBV).This study is a fi rst attempt to understand the practicality of GS in Litopenaeus vannamei and aims to evaluate models for GS on growth traits.The performance of GS models in L.vannamei was evaluated in a population consisting of 205 individuals,which were genotyped for 6 359 single nucleotide polymorphism(SNP)markers by specifi c length amplifi ed fragment sequencing(SLAF-seq)and phenotyped for body length and body weight.Three GS models(RR-BLUP,Bayes A,and Bayesian LASSO)were used to obtain the GEBV,and their predictive ability was assessed by the reliability of the GEBV and the bias of the predicted phenotypes.The mean reliability of the GEBVs for body length and body weight predicted by the dif ferent models was 0.296 and 0.411,respectively.For each trait,the performances of the three models were very similar to each other with respect to predictability.The regression coeffi cients estimated by the three models were close to one,suggesting near to zero bias for the predictions.Therefore,when GS was applied in a L.vannamei population for the studied scenarios,all three models appeared practicable.Further analyses suggested that improved estimation of the genomic prediction could be realized by increasing the size of the training population as well as the density of SNPs.展开更多
Effects of dopamine injection on the hemocyte count, phenoloxidase activity, serine proteinase activity, proteinase in-hibitor activity and α2-macroglobulin-like activity in L. vannamei were studied. Results showed t...Effects of dopamine injection on the hemocyte count, phenoloxidase activity, serine proteinase activity, proteinase in-hibitor activity and α2-macroglobulin-like activity in L. vannamei were studied. Results showed that dopamine injection resulted in a significant effect on the parameters measured (P < 0.05), while no significant difference was observed in the control group (0.85% NaCl). In the experimental groups,the hemocyte count reached the minimum in 3 h;granular and semi-granular cells became stable after 12 h and hyaline cells and the total hemocyte count became stable after 18 h. Phenoloxidase activity reached the minimum in 6 h, and then became stable after 9 h. Serine protease activity and proteinase inhibitor activity reached the minimum in 3 h, and α2-macro-globulin-like activity reached the maximum in 3 h,and all the three parameters became stable after 12 h. The results suggest that the activating mechanisms of the proPO system triggered by dopamine are different from those triggered by invasive agents or sponta-neously activated under a normal physical condition.展开更多
Pacific white shrimp has become a major aquaculture and fishery species worldwide.Although a large scale EST resource has been publicly available since 2008,the data have not yet been widely used for SNP discovery or ...Pacific white shrimp has become a major aquaculture and fishery species worldwide.Although a large scale EST resource has been publicly available since 2008,the data have not yet been widely used for SNP discovery or transcriptome-wide assessment of selective pressure.In this study,a set of 155 411 expressed sequence tags(ESTs) from the NCBI database were computationally analyzed and 17 225 single nucleotide polymorphisms(SNPs) were predicted,including 9 546 transitions,5 124 transversions and 2 481 indels.Among the 7 298 SNP substitutions located in functionally annotated contigs,58.4%(4 262) are non-synonymous SNPs capable of introducing amino acid mutations.Two hundred and fifty nonsynonymous SNPs in genes associated with economic traits have been identified as candidates for markers in selective breeding.Diversity estimates among the synonymous nucleotides were on average 3.49 times greater than those in non-synonymous,suggesting negative selection.Distribution of non-synonymous to synonymous substitutions(Ka/Ks) ratio ranges from 0 to 4.01,(average 0.42,median 0.26),suggesting that the majority of the affected genes are under purifying selection.Enrichment analysis identified multiple gene ontology categories under positive or negative selection.Categories involved in innate immune response and male gamete generation are rich in positively selected genes,which is similar to reports in Drosophila and primates.This work is the first transcriptome-wide assessment of selective pressure in a Penaeid shrimp species.The functionally annotated SNPs provide a valuable resource of potential molecular markers for selective breeding.展开更多
The Cross River Estuary,Nigeria,is an important shrimping area for artisanal fishermen of the coastal communities.The multi-species Macrobrachium fishery is exploited with three main gears,namely beach seine,push net ...The Cross River Estuary,Nigeria,is an important shrimping area for artisanal fishermen of the coastal communities.The multi-species Macrobrachium fishery is exploited with three main gears,namely beach seine,push net and trap.Studies on species composition of this fishery recorded thirteen shrimp species,one swimming crab (Callinectes amnicola) and two fish species (Eleotris sp.and Pellonula leonensis).The shrimp species identified included Macrobrachium macrobrachion (83.39% and 55.69% by number and weight,respectively),M.vollenhovenii (9.66% and 37.18%),M.equidens (3.8% and 2.87%),juveniles-sub-adults of Penaeus notialis (1.11% and 1.3%),M.dux,M.felicinum,Palaemonetes africanus,Palaemon maculatus,Palaemon elegans,Desmocaris sp.,Leander sp.,Nematopalaemon hastatus and Alpheus pontederiae.While the selectivity index for trap was 0.25,beach seine and push net had a lower index of 0.063.The results present the first comprehensive and representative report for the Estuary shrimp fishery and will assist in the management of the biodiversity of this ecosystem.展开更多
文摘Lepidium meyeniiWalp. (Maca), a perennial herbaceous plant with narrow distdbution in the Andean region, was cultivated by local residents as early as 1600 B.C. It has high nutritional values and multiple medicinal effects. In recent years the plant source of Maca has been greatly scarce since Maca products are increasingly becoming popular in the world. This makes the study urgent on the identification and quality evaluation of Maca materials. In present work, four Mace samples of different origins or handlings and three other natural plants, including radish, odental ginseng and American ginseng, were investigated. Their essential oils (steam distillates) of the hypogeal parts were weighed and analyzed by GC/MS. Through comparison of the characteristics of their chromatograms, it was found that the essential oil of Maca had unique GC/MS behaviors, and the characteristic peaks produced by the major essential oil components (Phenylacetonitrile, Benzaldehyde, 3-Methoxyphenylacetonitrile, etc) were distinct. Furthermore, the chromatograms of several Maca samples showed a similar qualitative pattern except for some differences in the quantitative composition, and the percentage of total essential oils in the samples varied from 0.88 % to 1.59 %. These behaviors and technologies can be applied to the identification of Maca materials in the markets and be a supplement to assess the quality of Maca matedals.
基金Supported by the National High Technology Research and Development Program of China(863 Program)(No.2012AA10A404)the National Natural Science Foundation of China(No.31502161)Financially Supported by Qingdao National Laboratory for Marine Science and Technology(No.2015ASKJ02)
文摘Genomic selection(GS)can be used to accelerate genetic improvement by shortening the selection interval.The successful application of GS depends largely on the accuracy of the prediction of genomic estimated breeding value(GEBV).This study is a fi rst attempt to understand the practicality of GS in Litopenaeus vannamei and aims to evaluate models for GS on growth traits.The performance of GS models in L.vannamei was evaluated in a population consisting of 205 individuals,which were genotyped for 6 359 single nucleotide polymorphism(SNP)markers by specifi c length amplifi ed fragment sequencing(SLAF-seq)and phenotyped for body length and body weight.Three GS models(RR-BLUP,Bayes A,and Bayesian LASSO)were used to obtain the GEBV,and their predictive ability was assessed by the reliability of the GEBV and the bias of the predicted phenotypes.The mean reliability of the GEBVs for body length and body weight predicted by the dif ferent models was 0.296 and 0.411,respectively.For each trait,the performances of the three models were very similar to each other with respect to predictability.The regression coeffi cients estimated by the three models were close to one,suggesting near to zero bias for the predictions.Therefore,when GS was applied in a L.vannamei population for the studied scenarios,all three models appeared practicable.Further analyses suggested that improved estimation of the genomic prediction could be realized by increasing the size of the training population as well as the density of SNPs.
基金supported by the Program for New century excellent talents in university(NCET-06-0597)the program transformation and expansion of achievement of agricultural science and technology in Tianjin,China(0604020)
文摘Effects of dopamine injection on the hemocyte count, phenoloxidase activity, serine proteinase activity, proteinase in-hibitor activity and α2-macroglobulin-like activity in L. vannamei were studied. Results showed that dopamine injection resulted in a significant effect on the parameters measured (P < 0.05), while no significant difference was observed in the control group (0.85% NaCl). In the experimental groups,the hemocyte count reached the minimum in 3 h;granular and semi-granular cells became stable after 12 h and hyaline cells and the total hemocyte count became stable after 18 h. Phenoloxidase activity reached the minimum in 6 h, and then became stable after 9 h. Serine protease activity and proteinase inhibitor activity reached the minimum in 3 h, and α2-macro-globulin-like activity reached the maximum in 3 h,and all the three parameters became stable after 12 h. The results suggest that the activating mechanisms of the proPO system triggered by dopamine are different from those triggered by invasive agents or sponta-neously activated under a normal physical condition.
基金Supported by the Key Program of National Natural Science Foundation of China (No.30730071)the National High Technology R&D Program of China(863 Program)(No.2012AA10A404)the Agricultural Science and Technology Achievements Transformation Funds Project(No.2010GB24910700)
文摘Pacific white shrimp has become a major aquaculture and fishery species worldwide.Although a large scale EST resource has been publicly available since 2008,the data have not yet been widely used for SNP discovery or transcriptome-wide assessment of selective pressure.In this study,a set of 155 411 expressed sequence tags(ESTs) from the NCBI database were computationally analyzed and 17 225 single nucleotide polymorphisms(SNPs) were predicted,including 9 546 transitions,5 124 transversions and 2 481 indels.Among the 7 298 SNP substitutions located in functionally annotated contigs,58.4%(4 262) are non-synonymous SNPs capable of introducing amino acid mutations.Two hundred and fifty nonsynonymous SNPs in genes associated with economic traits have been identified as candidates for markers in selective breeding.Diversity estimates among the synonymous nucleotides were on average 3.49 times greater than those in non-synonymous,suggesting negative selection.Distribution of non-synonymous to synonymous substitutions(Ka/Ks) ratio ranges from 0 to 4.01,(average 0.42,median 0.26),suggesting that the majority of the affected genes are under purifying selection.Enrichment analysis identified multiple gene ontology categories under positive or negative selection.Categories involved in innate immune response and male gamete generation are rich in positively selected genes,which is similar to reports in Drosophila and primates.This work is the first transcriptome-wide assessment of selective pressure in a Penaeid shrimp species.The functionally annotated SNPs provide a valuable resource of potential molecular markers for selective breeding.
文摘The Cross River Estuary,Nigeria,is an important shrimping area for artisanal fishermen of the coastal communities.The multi-species Macrobrachium fishery is exploited with three main gears,namely beach seine,push net and trap.Studies on species composition of this fishery recorded thirteen shrimp species,one swimming crab (Callinectes amnicola) and two fish species (Eleotris sp.and Pellonula leonensis).The shrimp species identified included Macrobrachium macrobrachion (83.39% and 55.69% by number and weight,respectively),M.vollenhovenii (9.66% and 37.18%),M.equidens (3.8% and 2.87%),juveniles-sub-adults of Penaeus notialis (1.11% and 1.3%),M.dux,M.felicinum,Palaemonetes africanus,Palaemon maculatus,Palaemon elegans,Desmocaris sp.,Leander sp.,Nematopalaemon hastatus and Alpheus pontederiae.While the selectivity index for trap was 0.25,beach seine and push net had a lower index of 0.063.The results present the first comprehensive and representative report for the Estuary shrimp fishery and will assist in the management of the biodiversity of this ecosystem.