Development of advanced electron tomography in materials science based on TEM and STEM

The recent developments of electron tomography（ET） based on transmission electron microscopy（TEM） and scanning transmission electron microscopy（STEM） in the field of materials science were introduced. The various types of ET based on TEM as well as STEM were described in detail, which included bright-field（BF）-TEM tomography, dark-field（DF）-TEM tomography, weak-beam dark-field（WBDF）-TEM tomography, annular dark-field（ADF）-TEM tomography, energy-filtered transmission electron microscopy（EFTEM） tomography, high-angle annular dark-field（HAADF）-STEM tomography, ADF-STEM tomography, incoherent bright field（IBF）-STEM tomography, electron energy loss spectroscopy（EELS）-STEM tomography and X-ray energy dispersive spectrometry（XEDS）-STEM tomography, and so on. The optimized tilt series such as dual-axis tilt tomography, on-axis tilt tomography, conical tilt tomography and equally-sloped tomography（EST） were reported. The advanced reconstruction algorithms, such as discrete algebraic reconstruction technique（DART）, compressed sensing（CS） algorithm and EST were overviewed. At last, the development tendency of ET in materials science was presented.

Application of SAGE algorithm in PET image reconstruction using modified ordered subsets

A new method that uses a modified ordered subsets （MOS） algorithm to improve the convergence rate of space-alternating generalized expectation-maximization （SAGE） algorithm for positron emission tomography （PET） image reconstruction is proposed.In the MOS-SAGE algorithm,the number of projections and the access order of the subsets are modified in order to improve the quality of the reconstructed images and accelerate the convergence speed.The number of projections in a subset increases as follows：2,4,8,16,32 and 64.This sequence means that the high frequency component is recovered first and the low frequency component is recovered in the succeeding iteration steps.In addition,the neighboring subsets are separated as much as possible so that the correlation of projections can be decreased and the convergences can be speeded up.The application of the proposed method to simulated and real images shows that the MOS-SAGE algorithm has better performance than the SAGE algorithm and the OSEM algorithm in convergence and image quality.

Effects of seasonal water-level fluctuation on soil pore structure in the Three Gorges Reservoir,China

Inundation of the Three Gorges Reservoir has created a 30-m water-level fluctuation zone with seasonal hydrological alternations of submergence and exposure, which may greatly affect soil properties and bank stability. The aim of this study was to investigate the response of soil pore structure to seasonal water-level fluctuation in the reservoir, and particularly, the hydrological change of wetting and drying cycles. Soil pore structure was visualized with industrial X-ray computed tomography and digital image analysis techniques. The results showed that soil total porosity(? 100 ?m), total pore number, total throat number, and mean throat surface area increased significantly under wetting and drying cycles. Soil porosity, pore number and throat numberwithin each size class increased in the course of wetting and drying cycles. The coordination number, degree of anisotropy and fractal dimension were indicating an increase. In contrast, the mean shape factor, pore-throat ratio, and Euler-Poincaré number decreased due to wetting and drying cycles. These illustrated that the wetting and drying cycles made soil pore structure become more porous, continuous, heterogeneous and complex. It can thus be deduced that the water-level fluctuation would modify soil porosity, pore size distribution, and pore morphology in the Three Gorges Reservoir, which may have profound implications for soil processes, soil functions, and bank stability.

Imaging technologies in oilfield applications

In this paper, we describe some recent imaging technologies developed by Schlumberger for oilfield downhole mul- tiphase flow production logging (PL) and cross-well electromagnetic (EM) survey applications. FloScan Imager (FSITM) has been introduced as a 3-phase oil/gas/water flow PL tool for deviated and horizontal wells. FSI sensors can map fluid velocity and holdup profiles along a vertical diameter of the wellbore at every survey depth, enabling a robust estimate of the individual phase flow rates in complex flow regimes. The cross-well EM survey is based on cross-borehole induction logging technique and provides resistivity distribution at a reservoir scale. It is a useful tool for reservoir management and is most effective in dynamic fields where fluid saturations are variable in time and space. The tool can be used to identify (water or steam) flooded and bypassed regions. By monitoring changes in the resistivity spatial distribution with time, cross-well EM survey is very effective at mapping inter-well temperature and structure. Some field examples are shown for both FloScan Imager PL tool and cross-well resistivity imaging survey.

Small intestine contrast ultrasonography vs computed tomography enteroclysis for assessing ileal Crohn's disease

AIM:To compare computed tomography enteroclysis(CTE) vs small intestine contrast ultrasonography(SICUS) for assessing small bowel lesions in Crohn's disease(CD),when using surgical pathology as gold standard.METHODS:From January 2007 to July 2008,15 eligible patients undergoing elective resection of the distal ileum and coecum(or right colon) were prospectively enrolled.All patients were under follow-up.The study population included 6 males and 9 females,with a median age of 44 years(range:18-80 years).Inclusion criteria:(1) certain diagnosis of small bowel requiring elective ileo-colonic resection;(2) age between 18-80 years;(3) elective surgery in our Surgical Unit;and(4) written informed consent.SICUS and CTE were performed ≤ 3 mo before surgery,followed by surgical pathology.The following small bowel lesions were blindly reported by one sonologist,radiologist,surgeon and histolopathologist:disease site,extent,strictures,abscesses,fistulae,small bowel dilation.Comparison between findings at SICUS,CTE,surgical specimens and histological examination was made by assessing the specificity,sensitivity and accuracy of each technique,when using surgical findings as gold standard.RESULTS:Among the 15 patients enrolled,CTE was not feasible in 2 patients,due to urgent surgery in one patients and to low compliance in the second patient,refusing to perform CTE due to the discomfort related to the naso-jejunal tube.The analysis for comparing CTE vs SICUS findings was therefore performed in 13 out of the 15 CD patients enrolled.Differently from CTE,SICUS was feasible in all the 15 patients enrolled.No complications were observed when using SICUS or CTE.Surgical pathology findings in the tested population included:small bowel stricture in 13 patients,small bowel dilation above ileal stricture in 10 patients,abdominal abscesses in 2 patients,enteric fistulae in 5 patients,lymphnodes enlargement(> 1 cm) in 7 patients and mesenteric enlargement in 9 patients.In order to compare findings by using SICUS,CTE,histology and surgery,characteristics of the small bowel lesions observed in CD each patient were blindly reported in the same form by one gastroenterologistsonologist,radiologist,surgeon and anatomopathologist.At surgery,lesions related to CD were detected in the distal ileum in all 13 patients,also visualized by both SICUS and CTE in all 13 patients.Ileal lesions > 10 cm length were detected at surgery in all the 13 CD patients,confirmed by SICUS and CTE in the same 12 out of the 13 patients.When using surgical findings as a gold standard,SICUS and CTE showed the exactly same sensitivity,specificity and accuracy for detecting the presence of small bowel fistulae(accuracy 77% for both) and abscesses(accuracy 85% for both).In the tested CD population,SICUS and CTE were also quite comparable in terms of accuracy for detecting the presence of small bowel strictures(92% vs 100%),small bowel fistulae(77% for both) and small bowel dilation(85% vs 82%).CONCLUSION:In our study population,CTE and the non-invasive and radiation-free SICUS showed a comparable high accuracy for assessing small bowel lesions in CD.

Imaging of liver cancer

Improvements in imaging technology allow exploitation of the dual blood supply of the liver to aid in the identif ication and characterisation of both malignant and benign liver lesions. Imaging techniques available include contrast enhanced ultrasound, computed tomography and magnetic resonance imaging. This review discusses the application of several imaging techniques in the diagnosis and staging of both hepatocellular carcinoma and cholangiocarcinoma and outlines certain characteristics of benign liver lesions. The advantages of each imaging technique are highlighted, while underscoring the potential pitfalls and limitations of each imaging modality.

THEORETICAL ANALYSIS OF THE STABILITY OF A DEEP ROADWAY

In this paper the thickness of a broken zone, a state parameter of roadway surrounding rock, is used as the index to evaluate the stabi1ity of surrounding rock of a deep roadway. The paper gives a theoretic formula for calculating the thickness of the broken zone. The author points out that not only the ultimate strength of rockmass but its residual strength and strain-softening level all have a great influence on the stability of surrounding rock of a deep roadway. The paper’s results show that to reinforce surrounding rock, raise its residual strength and lower its strain-softening level should be taken as a basic requirement for supports of a deep roadway. In addition, the research also indicates that it is impossible for roadway supports to change surrounding rock states of a deep roadway, so it is certain for them to work in a broken state. For this reason, a sufficient yieldable quantity is necessary for roadway supports used in deep mining.

ASSESSMENT OF MYOCARDIAL VIABILITY WITH CONTRAST-ENHANCED MAGNETIC RESONANCE IMAGING AND COMPARISON WITH SINGLE-PHOTON EMISSION COMPUTED TOMOGRAPHY

Objective To compare contrast-enhanced magnetic resonance imaging （ceMRI） with nuclear metabolic imaging for the assessment of myocardial viability in patients with chronic ischemic heart disease. Methods Twenty patients with suspected chronic ischemic heart disease underwent ceMRI and technetium-99m sestamibi single-photon emission computed tomography （SPECT）. Patients with positive SPECT results also underwent 18 F-fluorodeoxyglucose （FDG） SPECT. In a 17-segment model, the segmental extent of hyperenhancement （SEH） by ceMRI was compared with segmental FDG and sestamibi uptake by SPECT. Correlation between the extent of hyperenhancement by ceMRI and left ventricular function was analyzed. Seven patients got negative results both in ceMRI and technetium-99m sestamibi SPECT. The rest 13 patients with positive results then underwent ^18F-FDG SPECT. In 221 segments of 13 patients, SEH was （2. 1±8.2）%, （25.0±13.7 ）%, and （57. 7±23.6 ）% in segments with normal metabolism/perfusion, metabolism/perfusion mismatch, and matched defects, respectively, and there were significant differences between either two of them （ all P 〈 0.05）. By receiver operating characteristic curve analysis, the area under the curve was 0. 95 for the differentiation between viable and non-viable segments. At the cutoff value of 34%, SEH optimally differentiated viable from non-viable segments defined by SPECT. Using this threshold, the sensitivity and specificity of ceMRI to detect non-viable myocardium as defined by SPECT were 92% and 93%, respectively. Hyperenhancement size by ceMRI was correlated negatively with the left ventricular ejection fraction （ r = - 0.90, P 〈 0.01 ） and positively with left ventricular volumes （ r = 0. 62 for end-diastolic volume, r = 0.75 for end-systolic volume, both P 〈 0.05 ）. Conclusion CeMRI allows assessment of myocardial viability with a high accuracy in patients with chronic ischemic heart disease.

Diagnostics in inflammatory bowel disease: Ultrasound

Diagnosis of chronic inflammatory bowel diseases (IBD) is based on a combination of clinical symptoms, laboratory tests and imaging data. Imaging of the morphological characteristics of IBD includes the assessment of mucosal alterations, transmural involvement and extraintestinal manifestations. No single imaging technique serves as a diagnostic gold standard to encompass all disease manifestations. Ultrasound, computed tomography (CT) or magnetic resonance imaging (MRI) allow cross-sectional imaging of the transmural alterations and extraintestinal manifestations. While in the USA the technique of choice is CT, in Europe the focus is more on MRI and ultrasound (US). Most patients with chronic IBD are diagnosed at a young age. After baseline diagnosis many of these young patients have to undergo repetitive imaging procedures during the variable clinical course of the disease, characterized by alternate periods of remission and active disease, and in monitoring the response to treatment. US has the advantage of being noninvasive, less costly, and easily repeatable, and thus can be very useful in following up patients with IBD. In addition, rising concern about radiation exposure in young adults indicates the demand for radiation-sparing techniques like US and MRI. This article focuses on the current clinical practice of US in IBD, describing the current technologies used in transabdominal intestinal US and the characteristic sonographic findings in Crohn′s disease and ulcerative colitis.

Use of 3-D magnetic resonance electrical impedance tomography in detecting human cerebral stroke: a simulation study

We have developed a new three dimensional (3-D) conductivity imaging approach and have used it to detect human brain conductivity changes corresponding to acute cerebral stroke. The proposed Magnetic Resonance Electrical Impedance Tomography (MREIT) approach is based on the J-Substitution algorithm and is expanded to imaging 3-D subject conductivity distribution changes. Computer simulation studies have been conducted to evaluate the present MREIT imaging approach. Simulations of both types of cerebral stroke, hemorrhagic stroke and ischemic stroke, were performed on a four-sphere head model. Simulation results showed that the correlation coefficient (CC) and relative error (RE) between target and estimated conductivity distributions were 0.9245±0.0068 and 8.9997%±0.0084%, for hemorrhagic stroke, and 0.6748±0.0197 and 8.8986%±0.0089%, for ischemic stroke, when the SNR (signal-to-noise radio) of added GWN (Gaussian White Noise) was 40. The convergence characteristic was also evaluated according to the changes of CC and RE with different iteration numbers. The CC increases and RE decreases monotonously with the increasing number of iterations. The present simulation results show the feasibility of the proposed 3-D MREIT approach in hemorrhagic and ischemic stroke detection and suggest that the method may become a useful alternative in clinical diagnosis of acute cerebral stroke in humans.

Computed Tomography Using Level Set Method and Algebraic Reconstruction Technique

In this paper, a novel reconstruction technique based on level set method and algebraic reconstruction technique is proposed for multiphase flow computed tomography (CT) system. The curvature-driven noise reduction method is inserted into the conventional iteration procedure of algebraic reconstruction technique to improve the image quality and convergence speed with limited projection data. By evolving the image as a set of iso-intensity contours after each updation, the sufficient number of iterations for acceptable results is reduced by 80%-90%, while the image quality is enhanced obviously. Quantitative evaluation of image quality is given by using both relative image error and correlation coefficient. The resultant images can be utilized to detect flow regimes for monitoring industrial multiphase flow. Laboratory results demonstrate the feasibility of the proposed method. Phantoms of four typical flow regimes can be reconstructed from few-view projection data efficiently, and the corresponding image errors and correlation coefficients are acceptable for the cases tested in this paper.

The Acquisition Technique of High-resolution Seismic Data for the Prospecting of Active Faults

The high-resolution shallow seismic technique can be used for more accurately prospecting the position and property of faults and for the preliminary study of fault activity.The author obtains many high quality stack time sections through the prospecting methods of different seismic sources,different group intervals and different observation systems on the Xiadian fault.These sections clearly display the stratum structure and the structure characteristics from several meters to several hundred meters of the Xiadian fault.The resolutions of the different seismic sources,different group intervals and different observing systems are obtained.The prospecting methods and work parameters applicable for goal stratum of different depths and different accuracy requirements are proposed through the analysis of the stack time sections.This lays a good foundation for raising the prospecting resolution of the fault position and the latest active time of the fault.

Ultrasonic tomography and its applications in oilfield

UTT （Ultrasonic Tomography Tool） is widely used in the oil industry and can be used to inspect corrosion, casing wall damage, casing breakoff, and casing distortion in the well borehole with the maximum environment temperature being 125 ℃, and the pressure being 60 MPa. UTT consists of tool head, upper centralization, electronic section, lower centralization, transmitters, and receivers. Its outer diameter is 4.6 cm and length is 320 cm. The measured casing diameter ranges from 60 mm to 254 mm. The tomography resolution is 512×512. The borehole measurement accuracy is 2 mm. It can supply 3D pipe tomography, including horizontal and vertical profile. This paper introduces its specification, measurement principle, and applications in oilfield.

Microencapsulated tumor assay:Evaluation of the nude mouse model of pancreatic cancer

AIM: To establish a more stable and accurate nude mouse model of pancreatic cancer using cancer cell microencapsulation. METHODS: The assay is based on microencapsulation technology, wherein human tumor cells are encapsulated in small microcapsules (approximately 420 μm in diameter) constructed of semipermeable membranes. We implemented two kinds of subcutaneous implantation models in nude mice using the injection of single tumor cells and encapsulated pancreatic tumor cells. The size of subcutaneously implanted tumors was observed ona weekly basis using two methods, and growth curves were generated from these data. The growth and metastasis of orthotopically injected single tumor cells and encapsulated pancreatic tumor cells were evaluated at four and eight weeks postimplantation by positron emission tomography-computed tomography scan and necropsy. The pancreatic tumor samples obtained from each method were then sent for pathological examination. We evaluated differences in the rates of tumor incidence and the presence of metastasis and variations in tumor volume and tumor weight in the cancer microcapsules vs single-cell suspensions. RESULTS: Sequential in vitro observations of the microcapsules showed that the cancer cells in microcapsules proliferated well and formed spheroids at days 4 to 6. Further in vitro culture resulted in bursting of the membrane of the microcapsules and cells deviated outward and continued to grow in flasks. The optimum injection time was found to be 5 d after tumor encapsulation. In the subcutaneous implantation model, there were no significant differences in terms of tumor volume between the encapsulated pancreatic tumor cells and cells alone and rate of tumor incidence. There was a significant difference in the rate of successful im- plantation between the cancer cell microencapsulation group and the single tumor-cell suspension group (100% vs 71.43%, respectively, P = 0.0489) in the orthotropic implantation model. The former method displayed an obvious advantage in tumor mass (4th wk: 0.0461 ± 0.0399 vs 0.0313 ± 0.021, t = -0.81, P = 0.4379; 8th wk: 0.1284 ± 0.0284 vs 0.0943 ± 0.0571, t = -2.28, respectively, P = 0.0457) compared with the latter in the orthotopic implantation model. CONCLUSION: Encapsulation of pancreatic tumor cells is a reliable method for establishing a pancreatic tumor animal model.

A Quantitative Analysis of Dose Distributions of Two Tangential Whole Breast Irradiation Techniques

We compared DVHs （dose volume histograms） of two tangential irradiation techniques for whole breast RT （radiotherapy） CT （computed tomography） based 2D （two dimensional） technique with wedge filters and 3D CRT （three dimensional conformal radiotherapy） with segmented fields. These two modalities are commonly used in external beam radiotherapy of breast cancer in Clinical Center Nis, Clinic of Oncology, Serbia. Therapy plans that employed two techniques were generated for eighteen patients. Dosimetric outcomes of each technique were investigated. The maximum dose of breast CTV was significantly reduced from 55.83 Gy for 2D to 54.1 Gy for 3D CRT. Also, the maximum dose of lung tissue decreased from 51.81 Gy for 2D to 49.61 Gy for 3D. The dose conformity and uniformity were much better with 3D CRT segmented field technique.

Dual-basis reconstruction techniques for tomographic PIV

As an inverse problem, particle reconstruction in tomographic particle image velocimetry attempts to solve a large-scale underdetermined linear system using an optimization technique. The most popular approach, the multiplicative algebraic reconstruction technique(MART), uses entropy as an objective function in the optimization. All available MART-based methods are focused on improving the efficiency and accuracy of particle reconstruction. However, those methods do not perform very well on dealing with ghost particles in highly seeded measurements. In this report, a new technique called dual-basis pursuit(DBP), which is based on the basis pursuit technique, is proposed for tomographic particle reconstruction. A template basis is introduced as a priori knowledge of a particle intensity distribution combined with a correcting basis to enable a full span of the solution space of the underdetermined linear system. A numerical assessment test with 2D synthetic images indicated that the DBP technique is superior to MART method, can completely recover a particle field when the number of particles per pixel(ppp) is less than 0.15, and can maintain a quality factor Q of above 0.8 for ppp up to 0.30. Unfortunately, the DBP method is difficult to utilize in 3D applications due to the cost of its excessive memory usage. Therefore, a dual-basis MART was designed that performed better than the traditional MART and can potentially be utilized for 3D applications.

Assessment of cortical bone microdamage following insertion of microimplants using optical coherence tomography: a preliminary study

Objectives： The study was done to evaluate the efficacy of optical coherence tomography （OCT）, to detect and analyze the microdamage occurring around the microimplant immediately following its placement, and to compare the findings with micro-computed tomography （IJCT） images of the samples to validate the result of the present study. Methods： Microimplants were inserted into bovine bone samples. Images of the samples were obtained using OCT and μCT. Visual comparisons of the images were made to evaluate whether anatomical details and microdamage induced by microimplant insertion were accurately revealed by OCT. Results： The surface of the cortical bone with its anatomical variations is visualized on the OCT images. Microdamage occurring on the surface of the cortical bone around the microimplant can be appreciated in OCT images. The resulting OCT images were compared with the μCT images. A high correlation regarding the visualization of individual microcracks was observed. The depth penetration of OCT is limited when compared to μCT. Conclusions： OCT in the present study was able to generate high-resolution images of the microdamage occurring around the microimplant. Image quality at the surface of the cortical bone is above par when compared with μCT imaging, because of the inherent high contrast and high-resolution quality of OCT systems. Improvements in the imaging depth and development of intraoral sensors are vital for developing a real-time imaging system and integrating the system into orthodontic practice.

Assessments of tear meniscus height, tear film thickness, and corneal epithelial thickness after deep anterior lamellar keratoplasty

Objective： To assess the lower tear meniscus height（LTMH）, central tear film thickness（CTFT）, and central corneal epithelial thickness（CCET） after deep anterior lamellar keratoplasty（DALK）. Methods： This was a retrospective cross-sectional study of 20 patients who had DALK in one eye over a three-month period. LTMH, CTFT, and CCET of the operated eyes and the unoperated fellow eyes were measured using high-definition optical coherence tomography（HD-OCT）. Correlations between three OCT assessments and age, time following surgery, graft size, bed size, and the number of residual sutures were analyzed. Results： Compared to patients with keratoconus, patients with other corneal conditions had significantly higher CCET in the fellow eye（P=0.024）. For all patients, CCET in the operated eye was significantly negatively correlated with the number of residual sutures（R=-0.579, P=0.008）, and was significantly positively correlated with time following surgery（R=0.636, P=0.003）. In the fellow eye, a significant positive correlation was found between age and CCET（R=0.551, P=0.012）, and a significant negative correlation between age and CTFT（R=-0.491, P=0.028）. LTMH was found to be significantly correlated between operated and fellow eyes（R=0.554, P=0.011）. There was no significant correlation between LTMH and age, bed/graft size, time following surgery, or residual sutures（all possible correlations, P0.05）. Conclusions： Patients with keratoconus tend to have a thinner central corneal epithelium. Corneal epithelium keeps regenerating over time after DALK. DALK did not induce a significant change in tear volume compared with the fellow eye. Postoperative tear function might depend on an individual＇s general condition, rather than on age, gender, bed/graft size, time following surgery, or residual sutures.

Diagnostic value of optic disc retinal nerve fiber layer thickness for diabetic peripheral neuropathy

Objective:To investigate the value of optic disc retinal nerve fiber layer(RNFL)thickness in the diagnosis of diabetic peripheral neuropathy(DPN).Methods:Ninety patients with type 2 diabetes,including 60 patients without DPN(NDPN group)and 30 patients with DPN(DPN group),and 30 healthy participants(normal group)were enrolled.Optical coherence tomography(OCT)was used to measure the four quadrants and the overall average RNFL thickness of the optic disc.The receiver operator characteristic curve was drawn and the area under the curve(AUC)was calculated to evaluate the diagnostic value of RNFL thickness in the optic disc area for DPN.Results:The RNFL thickness of the DPN group was thinner than those of the normal and NDPN groups in the overall average((101.07±12.40)μm vs.(111.07±6.99)μm and(109.25±6.90)μm),superior quadrant((123.00±19.04)μm vs.(138.93±14.16)μm and(134.47±14.34)μm),and inferior quadrant((129.37±17.50)μm vs.(143.60±12.22)μm and(144.48±14.10)μm),and the differences were statistically significant.The diagnostic efficiencies of the overall average,superior quadrant,and inferior quadrant RNFL thicknesses,and a combined index of superior and inferior quadrant RNFL thicknesses were similar,and the AUCs were 0.739(95%confidence interval(CI)0.635–0.826),0.683(95%CI 0.576–0.778),0.755(95%CI 0.652–0.840),and 0.773(95%CI 0.672–0.854),respectively.The diagnostic sensitivity of RNFL thickness in the superior quadrant reached 93.33%.Conclusions:The thickness of the RNFL in the optic disc can be used as a diagnostic method for DPN.