In order to provide directionally genetically improved breeding materials of poplar by exploring the phenological traits genetic variation level and its develop- ment potential of Populus deltoides and the resource ev...In order to provide directionally genetically improved breeding materials of poplar by exploring the phenological traits genetic variation level and its develop- ment potential of Populus deltoides and the resource evaluation was carried out; 8 phenological phases in seedling period were observed and analyzed of 60 Populus deltoids clones introduced from America. The results showed that： （1） there was obvious difference in phonological character among clones, especially in leaf-spread- ing peak stage and the end term of leaf-falling stage, with the largest variation co- efficient of 14.97% and the minimum of 3.83% respectively. （2） Leaf-spreading peak stage scattered but the end term of leaf-falling stage concentrated the most. The phonological character in early stage of seedling growth was the main factor influ- encing the length of growing season. （3） By principal component analysis, pheno- logical phases were classified into 3 typical periods, including germination stage, leaf-spreading peak stage and leaf-falling stage. （4） Totaling 60 clones were classi- fied into 4 types by using clustering analysis in phenological time variables of clones.展开更多
Density functional theory （DFT） was used to calculate molecular descriptors （properties） for 12 fluoro-quinolone with anti-S.pneumoniae activity. Principal component analysis （PCA） and hierarchical cluster analy...Density functional theory （DFT） was used to calculate molecular descriptors （properties） for 12 fluoro-quinolone with anti-S.pneumoniae activity. Principal component analysis （PCA） and hierarchical cluster analysis （HCA） were employed to reduce dimensionality and investigate in which variables should be more effective for classifying fluoroquinolones according to their degree of an-S.pneumoniae activity. The PCA results showed that the variables ELUMO, Q3, Q5, QA, logP, MR, VOL and △EHL of these compounds were responsible for the anti-S.pneumoniae activity. The HCA results were similar to those obtained with PCA.The methodologies of PCA and HCA provide a reliable rule for classifying new fluoroquinolones with antiS.pneumoniae activity. By using the chemometric results, 6 synthetic compounds were analyzed through the PCA and HCA and two of them are proposed as active molecules with anti-S.pneumoniae, which is consistent with the results of clinic experiments.展开更多
In order to distinguish 8 kinds of rhizome crops, the 40 samples were studied by Fourier transform infrared spectroscopy （FTIR） combined with wavelet transform （WT）, principal component analysis （PCA） and hieram...In order to distinguish 8 kinds of rhizome crops, the 40 samples were studied by Fourier transform infrared spectroscopy （FTIR） combined with wavelet transform （WT）, principal component analysis （PCA） and hieramhical cluster analysis （HCA）. The results showed that the infrared spectra were similar on the whole, but there were differences in peak position, peak shape and peak absorption intensity in the range of 1 800-700 cm-1. The infrared spectra in the range of 1 800-700 cm-1 were selected to perform continuous wavelet transform （CWT） and discrete wavelet transform （DWT）. The 15th-Ievel decomposition coefficients of CWT and the 5=-level detail coefficients of DWT were classified by PCA and HCA. The cumulative contri- bution rates of the first three principal components of CWT and DWT were 93.12% and 89.78%, respectively. The accurate recognition rates of PCA and HCA were all 100%. It is proved that FTIR combined with WT can be used to distinguish different kinds of rhizome crops.展开更多
[Objective] This study aimed to analyze the morphological diversity of red- seed watermelon （Citrullus lanatus ssp. vulgaris var. megalaspermus Lin et Chao） germplasm resources. [Method] Multiple cluster analysis an...[Objective] This study aimed to analyze the morphological diversity of red- seed watermelon （Citrullus lanatus ssp. vulgaris var. megalaspermus Lin et Chao） germplasm resources. [Method] Multiple cluster analysis and principal components analysis on the morphological traits of 51 red-seed watermelon germplasm resources were carried out. [Result] The coefficient of variations （CVs） of 39 morphological traits in 51 red-seed watermelon idioplasm resources ranged from 5.37% to 66.95%, with an average of 22.87%. The average of Shannon diversity information indices was 1.55. Among them, the Shannon diversity information index of seed length was the highest （2.16） and that of seed shell figure pattern was the lowest （0.32）. In ad- dition, the morphological diversity information indices of quantity characters were higher than that of quality characters. The principal components analysis revealed that the variance contribution rates of the first, second and third principal compo- nents were 19.49%, 15.32% and 9.55%, respectively. Cluster analysis divided the 51 materials into three broad branches based on the morphological traits. There was only one material in the fist branch and two in the second branch, and all the three materials were wild. The other 48 materials were divided into the third branch and all of them were cultivars. [Conclusion] This study provided a theoretical basis for the protection and utilization of red-seed watermelon resources.展开更多
[Objective] This study aimed to investigate the trace elements in Rehman- nia glutinosa Libosch. by using principal component analysis and clustering analysis. [Method] Principal component analysis and clustering anal...[Objective] This study aimed to investigate the trace elements in Rehman- nia glutinosa Libosch. by using principal component analysis and clustering analysis. [Method] Principal component analysis and clustering analysis of R. glutinosa medicinal materials from different sources were conducted with contents of six trace elements as indices. [Result] The principal component analysis could comprehen- sively evaluate the quality of R. glutinosa samples with objective results which was consistent with the results of clustering analysis. [Conclusion] Principal component analysis and clustering analysis methods can be used for the quality evaluation of Chinese medicinal materials with multiple indices.展开更多
With 50 large-flowered Chrysanthemum varieties from germplasm nursery of Wunaoshan Forest Farm in Macheng City as research objects, 64 morphological traits were investigated by field experiments adopting randomized bl...With 50 large-flowered Chrysanthemum varieties from germplasm nursery of Wunaoshan Forest Farm in Macheng City as research objects, 64 morphological traits were investigated by field experiments adopting randomized block design. The morphological differences were observed by uniformity analysis, variability analysis, principal component analysis and cluster analysis. The result showed that the vari- able coefficients of 59 traits were greater than 15%; the contribution rate of first seven principal components reached 81.45%; and it was found by clustering analy- sis that the 50 germplasm resources could be divided into four clusters with obvious morphological differences, and plant type could be used as an index for classifica- tion.展开更多
Ficus deltoidea Jack （Moraceae） or Mas Cotek is a small shrub with a great morphological variation. Measurement of 40 morphological traits had been done on 50 accessions to find the most significant characters that ...Ficus deltoidea Jack （Moraceae） or Mas Cotek is a small shrub with a great morphological variation. Measurement of 40 morphological traits had been done on 50 accessions to find the most significant characters that enable differentiation being done according to its variety groups. The data were analyzed with principal component analysis （PCA） and cluster analysis （CA） using cluster software package programme to produce the scatter diagram and dendrogram relationship of the taxa. The results showed that there were 25 morphological characters having the value of factor analysis greater than 0.60 from its principal component （PC） with the Eigen value greater than 1.0. 16 out of 40 morphological characters had been identified as having high values of correlation coefficient ranging from -0.783 to 0.890. The analysis showed that the most responsible characters in grouping the samples into different groups are the shape and size of leaf, number and color of dots on the leaf surface and characters of syconium. The scatter diagram of the accessions on the PC1 against PC2 showed six major groups. The dendrogram displayed the relationship among the accessions and within the dissimilarity distance = 19, it classified the samples into five major groups. Observation on F. deltoidea resulted in the findings of high variability among the accessions. The most significant characters in grouping accessions are the shapes of leaf base （BL）, shape of leaf apex （SA）, ratio of lamina width to lamina length （R）, dots color at the lower midrib （DLM）, color of young syconium （CYS）, color of mature syconium （CMS） and the number of syconium on trees （DST）. This study provides basic information for introduction of some particular traits and effective conservation of the species breeding programme. The morphological traits were found to be useful for the diversity studies and in identifying the variation. The actual figures of F. deltoidea obtained through this study enable comparison being done to the previous and in future study. Hence, the varieties that are extinct could be recognised.展开更多
基金Supported by National Special Funds for Forest Research in the Public Interest(201004004)~~
文摘In order to provide directionally genetically improved breeding materials of poplar by exploring the phenological traits genetic variation level and its develop- ment potential of Populus deltoides and the resource evaluation was carried out; 8 phenological phases in seedling period were observed and analyzed of 60 Populus deltoids clones introduced from America. The results showed that： （1） there was obvious difference in phonological character among clones, especially in leaf-spread- ing peak stage and the end term of leaf-falling stage, with the largest variation co- efficient of 14.97% and the minimum of 3.83% respectively. （2） Leaf-spreading peak stage scattered but the end term of leaf-falling stage concentrated the most. The phonological character in early stage of seedling growth was the main factor influ- encing the length of growing season. （3） By principal component analysis, pheno- logical phases were classified into 3 typical periods, including germination stage, leaf-spreading peak stage and leaf-falling stage. （4） Totaling 60 clones were classi- fied into 4 types by using clustering analysis in phenological time variables of clones.
基金This work was supported by National Nature Science Foundation of China and China Academy of Engineering Physics （No. 10376021） Provincial National Science Foundation of He＇nan （No. 2004601107）.
文摘Density functional theory （DFT） was used to calculate molecular descriptors （properties） for 12 fluoro-quinolone with anti-S.pneumoniae activity. Principal component analysis （PCA） and hierarchical cluster analysis （HCA） were employed to reduce dimensionality and investigate in which variables should be more effective for classifying fluoroquinolones according to their degree of an-S.pneumoniae activity. The PCA results showed that the variables ELUMO, Q3, Q5, QA, logP, MR, VOL and △EHL of these compounds were responsible for the anti-S.pneumoniae activity. The HCA results were similar to those obtained with PCA.The methodologies of PCA and HCA provide a reliable rule for classifying new fluoroquinolones with antiS.pneumoniae activity. By using the chemometric results, 6 synthetic compounds were analyzed through the PCA and HCA and two of them are proposed as active molecules with anti-S.pneumoniae, which is consistent with the results of clinic experiments.
基金Supported by National Natural Science Foundation of China(30960179)Program for Innovative Research Team in Science and Technology in University of Yunnan Province~~
文摘In order to distinguish 8 kinds of rhizome crops, the 40 samples were studied by Fourier transform infrared spectroscopy （FTIR） combined with wavelet transform （WT）, principal component analysis （PCA） and hieramhical cluster analysis （HCA）. The results showed that the infrared spectra were similar on the whole, but there were differences in peak position, peak shape and peak absorption intensity in the range of 1 800-700 cm-1. The infrared spectra in the range of 1 800-700 cm-1 were selected to perform continuous wavelet transform （CWT） and discrete wavelet transform （DWT）. The 15th-Ievel decomposition coefficients of CWT and the 5=-level detail coefficients of DWT were classified by PCA and HCA. The cumulative contri- bution rates of the first three principal components of CWT and DWT were 93.12% and 89.78%, respectively. The accurate recognition rates of PCA and HCA were all 100%. It is proved that FTIR combined with WT can be used to distinguish different kinds of rhizome crops.
基金Supported by the National Program for Space Breeding Special Fund of(2006HT100113)China Agriculture Research System(CARS-26)~~
文摘[Objective] This study aimed to analyze the morphological diversity of red- seed watermelon （Citrullus lanatus ssp. vulgaris var. megalaspermus Lin et Chao） germplasm resources. [Method] Multiple cluster analysis and principal components analysis on the morphological traits of 51 red-seed watermelon germplasm resources were carried out. [Result] The coefficient of variations （CVs） of 39 morphological traits in 51 red-seed watermelon idioplasm resources ranged from 5.37% to 66.95%, with an average of 22.87%. The average of Shannon diversity information indices was 1.55. Among them, the Shannon diversity information index of seed length was the highest （2.16） and that of seed shell figure pattern was the lowest （0.32）. In ad- dition, the morphological diversity information indices of quantity characters were higher than that of quality characters. The principal components analysis revealed that the variance contribution rates of the first, second and third principal compo- nents were 19.49%, 15.32% and 9.55%, respectively. Cluster analysis divided the 51 materials into three broad branches based on the morphological traits. There was only one material in the fist branch and two in the second branch, and all the three materials were wild. The other 48 materials were divided into the third branch and all of them were cultivars. [Conclusion] This study provided a theoretical basis for the protection and utilization of red-seed watermelon resources.
基金Supported by Fund of Sichuan Provincial Administration of traditional Chinese Medicine(2008-12)~~
文摘[Objective] This study aimed to investigate the trace elements in Rehman- nia glutinosa Libosch. by using principal component analysis and clustering analysis. [Method] Principal component analysis and clustering analysis of R. glutinosa medicinal materials from different sources were conducted with contents of six trace elements as indices. [Result] The principal component analysis could comprehen- sively evaluate the quality of R. glutinosa samples with objective results which was consistent with the results of clustering analysis. [Conclusion] Principal component analysis and clustering analysis methods can be used for the quality evaluation of Chinese medicinal materials with multiple indices.
基金Supported by Central Financial Forestry Science and Technology Promotion and Demonstration Project(2014HBTG07)~~
文摘With 50 large-flowered Chrysanthemum varieties from germplasm nursery of Wunaoshan Forest Farm in Macheng City as research objects, 64 morphological traits were investigated by field experiments adopting randomized block design. The morphological differences were observed by uniformity analysis, variability analysis, principal component analysis and cluster analysis. The result showed that the vari- able coefficients of 59 traits were greater than 15%; the contribution rate of first seven principal components reached 81.45%; and it was found by clustering analy- sis that the 50 germplasm resources could be divided into four clusters with obvious morphological differences, and plant type could be used as an index for classifica- tion.
文摘Ficus deltoidea Jack （Moraceae） or Mas Cotek is a small shrub with a great morphological variation. Measurement of 40 morphological traits had been done on 50 accessions to find the most significant characters that enable differentiation being done according to its variety groups. The data were analyzed with principal component analysis （PCA） and cluster analysis （CA） using cluster software package programme to produce the scatter diagram and dendrogram relationship of the taxa. The results showed that there were 25 morphological characters having the value of factor analysis greater than 0.60 from its principal component （PC） with the Eigen value greater than 1.0. 16 out of 40 morphological characters had been identified as having high values of correlation coefficient ranging from -0.783 to 0.890. The analysis showed that the most responsible characters in grouping the samples into different groups are the shape and size of leaf, number and color of dots on the leaf surface and characters of syconium. The scatter diagram of the accessions on the PC1 against PC2 showed six major groups. The dendrogram displayed the relationship among the accessions and within the dissimilarity distance = 19, it classified the samples into five major groups. Observation on F. deltoidea resulted in the findings of high variability among the accessions. The most significant characters in grouping accessions are the shapes of leaf base （BL）, shape of leaf apex （SA）, ratio of lamina width to lamina length （R）, dots color at the lower midrib （DLM）, color of young syconium （CYS）, color of mature syconium （CMS） and the number of syconium on trees （DST）. This study provides basic information for introduction of some particular traits and effective conservation of the species breeding programme. The morphological traits were found to be useful for the diversity studies and in identifying the variation. The actual figures of F. deltoidea obtained through this study enable comparison being done to the previous and in future study. Hence, the varieties that are extinct could be recognised.
