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铜绿假单胞菌PvdD蛋白主要特性及抗原表位的生物信息学分析
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作者 蔡其刚 王芬 《青海畜牧兽医杂志》 2022年第6期18-24,51,共8页
为了分析铜绿假单胞菌中假单胞菌素合成酶D(PaPvdD)蛋白的主要特性与抗原表位,进而为研制基于合成酶D(PvdD)的铜绿假单胞菌疫苗提供依据,本研究首先从NCBI蛋白质数据库中下载PaPvdD蛋白的氨基酸序列,然后采用ProtParam、SignalP 4.1、PS... 为了分析铜绿假单胞菌中假单胞菌素合成酶D(PaPvdD)蛋白的主要特性与抗原表位,进而为研制基于合成酶D(PvdD)的铜绿假单胞菌疫苗提供依据,本研究首先从NCBI蛋白质数据库中下载PaPvdD蛋白的氨基酸序列,然后采用ProtParam、SignalP 4.1、PSORTb 3.0、MotifScan、SYFPEITHI等在线分析软件,结合DNAMAN、DNAStar等生物信息学软件分析、预测PaPvdD蛋白的理化性质、信号肽序列、亚细胞定位、翻译后修饰位点以及B、T细胞表位。结果表明,PaPvdD蛋白由2448氨基酸(aa)组成,是一种亲水性的不稳定蛋白,不含有信号肽序列和跨膜结构域,可能定位于细胞质。PaPvdD蛋白含有3个B细胞表位(分别位于687~723 aa、1748~1784 aa、2194~2210 aa)和5个T细胞表位(分别位于97~105 aa、152~160 aa、697~705 aa、787~795 aa、1005~1013 aa)。本研究通过生物信息学方法筛选出了PaPvdD蛋白的3个B细胞表位和5个T细胞表位,这为研制基于PvdD的铜绿假单胞菌疫苗提供了理论基础。 展开更多
关键词 铜绿假单 假单胞菌素 假单胞菌素合成酶D 生物信息学 抗原表位
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Pseudomonas exotoxin antisense RNA selectively kills hepatitis B virus infected cells 被引量:2
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作者 Peter Hafkemeyer Ulrich Brinkmann +3 位作者 Elizabeth Brinkmann Ira Pastan Hubert E Blum Thomas F Baumert 《World Journal of Gastroenterology》 SCIE CAS CSCD 2008年第18期2810-2817,共8页
AIM: To present an approach for selectively killing retrovirus-infected cells that combines the toxicity of Pseudomonas exotoxin (PE) and the presence of reverse transcriptase (RT) in infected cells. METHODS: PE antis... AIM: To present an approach for selectively killing retrovirus-infected cells that combines the toxicity of Pseudomonas exotoxin (PE) and the presence of reverse transcriptase (RT) in infected cells. METHODS: PE antisense toxin RNA has palindromic stem loops at its 5' and 3' ends enabling self-primed generation of cDNA in the presence of RT. The RT activity expressed in retrovirus-infected cells converts "antisense-toxin-RNA" into a lethal toxin gene exclusively in these cells. RESULTS: Using cotransfection studies with PE-expressing RNAs and β-gal expressing reporter plasmids, we show that, in HepG2 and HepG2.2.15 hepatoma cells as well as in duck hepatitis B virus (DHBV) infected cells, HBV or DHBV-polymerase reverse transcribe a lethal cDNA copy of an antisense toxin RNA, which is composed of sequences complementary to a PE gene and eukaryotic transcription and translation signals. CONCLUSION: This finding may have important implications as a novel therapeutic strategy aimed at the elimination of HBV infection. 展开更多
关键词 Gene therapy Pseudomonas exotoxin RETROVIRUS Reverse transcription
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Demineralization of Gondwana coal with Pseudomonas mendocina strain B6-1: a case study of coal from Gopinathpur top and bottom seams of Mugma mine, Dhanbad, Jharkhand (India)
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作者 Prakash K. Singh Asha Lata Singh +4 位作者 Mahendra P. Singh A. S. Naik Dharmshila Singh Spardha Rai Aniruddha Kumar 《International Journal of Coal Science & Technology》 EI 2016年第2期235-245,共11页
In the present investigation an attempt has been made to demineralize the Gondwana coal of Gopinathpur top and bottom seams of Mugma mine, Raniganj coalfield, Dhanbad with the help of Pseudomonas mendocina strain B6-1... In the present investigation an attempt has been made to demineralize the Gondwana coal of Gopinathpur top and bottom seams of Mugma mine, Raniganj coalfield, Dhanbad with the help of Pseudomonas mendocina strain B6-1. The change in the amount of ash yield and decrease in the concentration of selected minor elements like Na, K, Mn and Ca and environmentally sensitive selected trace elements such as Cd, Pb, Se, Ni, Mn, and Zn have been studied as a function of time of bacterial treatment as well as with variation in the bacterial biomass. After 28 days of bacterial treatment there was variable amount of decrease observed in ash yield as well as in the concentration of minor and trace elements. The removal of the elements was further enhanced with the increase in the bacterial biomass from 10 to 25 mg/mL. Due to over exploitation of superior grade coals in the country, the remaining coal resources, available for current use, are inferior in grade and contain high level of impurities and there is ample scope of bio-beneficiation of these coals using bacterial biomass. 展开更多
关键词 Pseudomonas mendocina Gondwana coal Minor and trace elements DEMINERALIZATION
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Synthesis Antimicrobial Activity of p-Dimetyl-Amino-Benyzlaldehide Shift Base of α-NaftyI-Amine and Metal Complexes
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作者 Aysel Rahimova Parvin Mamedova Mahizar Aliyeva Boyukhanim Aminova 《Journal of Chemistry and Chemical Engineering》 2014年第7期682-685,共4页
A new Shift bases was synthesized by the reaction of p-dimetyl-amino-benzylaldehide and α-naftyl-amine. All synthesized compounds were characterized by elemental analysis, IR (infra red) spectroscopy and NMR (nucl... A new Shift bases was synthesized by the reaction of p-dimetyl-amino-benzylaldehide and α-naftyl-amine. All synthesized compounds were characterized by elemental analysis, IR (infra red) spectroscopy and NMR (nuclear magnetic resonance) spectroscopy and evaluated for their in vitro antifungal activities of the compounds tested against Pseudomonas aeruginosa, Mycobacterium lacticolium, Aspergillus niger, Cladasporium resinale, Penicillium chrosegenum, Chastorniurn gloloodium and Trichoderma virideh. These derivatives have vast range of biological activities which benefit us. 展开更多
关键词 Shift bases antimicrobial activity metal complexes.
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