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基于生物信息学探究隐睾与睾丸癌的共病基因及其作用机制
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作者 程鹏 王允武 +1 位作者 张书贤 沈亚军 《医学理论与实践》 2024年第23期3969-3974,3986,共7页
目的:利用生物信息学探究隐睾及睾丸癌的共病基因,旨在为隐睾和睾丸癌的临床诊治提供新的方法和理论基础。方法:从GEO数据库获得隐睾数据集(GSE16191和GSE25518),睾丸癌的基因表达谱来自TCGA,对照组来自GTEx数据库。对隐睾和睾丸癌中存... 目的:利用生物信息学探究隐睾及睾丸癌的共病基因,旨在为隐睾和睾丸癌的临床诊治提供新的方法和理论基础。方法:从GEO数据库获得隐睾数据集(GSE16191和GSE25518),睾丸癌的基因表达谱来自TCGA,对照组来自GTEx数据库。对隐睾和睾丸癌中存在的共同差异表达基因(DEGs)进行GO和KEGG通路富集分析。随后,通过使用STRING数据库构建蛋白质—蛋白质相互作用(PPI)网络,并检测网络中的核心模块和枢纽(Hub)基因,并对Hub基因进行共表达网络的构建。最后在HPA数据库中对Hub基因进行验证。结果:共鉴定出419个DEGs(166个上调基因和253个下调基因)用于后续分析。功能富集分析强调piRNA代谢、DNA甲基化、转座的负调控在这两种疾病中发挥着重要作用。最后,使用cytoHubba鉴定了5个Hub基因,包括DDX4、MOV10L1、PIWIL2、PIWIL4和TDRD9。结论:本研究揭示了这5个Hub基因是隐睾和睾丸癌的共同发病机制的基础,也可能是潜在的治疗靶点。 展开更多
关键词 隐睾 睾丸癌 共病基因 生物信息学
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Clinical relevance and public health significance of hepatitis B virus genomic variations 被引量:54
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作者 Guang-Wen Cao 《World Journal of Gastroenterology》 SCIE CAS CSCD 2009年第46期5761-5769,共9页
Ten hepatitis B virus (HBV) genotypes (A-J) and 34 HBV subgenotypes have been identified so far. HBV genotypes and subgenotypes have distinct geographical distributions, and have been shown to differ with regard t... Ten hepatitis B virus (HBV) genotypes (A-J) and 34 HBV subgenotypes have been identified so far. HBV genotypes and subgenotypes have distinct geographical distributions, and have been shown to differ with regard to clinical outcome, prognosis, and response to interferon treatment. Infection with subgenotype A2 is frequently associated with high viral load, resulting in acute infection via horizontal transmission. Genotypes A and B are more sensitive to interferon treatment than genotypes D and C, respectively. Genotype B is more frequent in acute hepatitis than genotype C, whereas genotype C (C2) is more frequently associated with an increased risk of hepatocellular carcinoma (HCC), mostly cirrhotic, as compared with genotype B (B2). Genotype mixture is associated with high viral load and worse outcome of HBV infection. HBV mutations in the S genes, especially amino acids substitution at position 145 (G145R), are associated with immune escape, whereas mutations in the PreS or S genes which impair HBsAg secretion could present a risk to blood safety. HBV variants harboring mutations in the viral polymerase gene that confer resistance to nucleoside analogs may be selected during antiviral therapy. Different genotypes have distinct mutation patterns in the PreS and EnhH/BCP/Precore regions. PreS deletions, C1653T, T1753V, and A1762T/G1764A are associated with an increased risk of HCC. HCC- associated HBV mutants may not transmit via motherto-child transmission, and are likely generated during HBV-induced pathogenesis. Examination of HBV mutations alone or in combination and host genetic suscep-tibility will be helpful in classifying the HBV-infected subjects who will develop HCC and need active antiviral treatments. 展开更多
关键词 Hepatitis B virus GENOTYPE SUBGENOTYPE MUTATION CLINICAL Public health Evolution
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Comethylation of p16 and MGMT genes in colorectal carcinoma:Correlation with clinicopathological features and prognostic value 被引量:10
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作者 Koviljka Krtolica Milena Krajnovic +3 位作者 Slavica Usaj-Knezevic Dragan Babic Dusan Jovanovic Bogomir Dimitrijevic 《World Journal of Gastroenterology》 SCIE CAS CSCD 2007年第8期1187-1194,共8页
AIM: To investigate the significance of p16 and O6- methylguanine-DNA methyltransferase (MGMT) genes promoter hypermethylation and K-ras mutations on colorectal tumorigenesis and progression. METHODS: p16 and MGMT met... AIM: To investigate the significance of p16 and O6- methylguanine-DNA methyltransferase (MGMT) genes promoter hypermethylation and K-ras mutations on colorectal tumorigenesis and progression. METHODS: p16 and MGMT methylation status was examined on 47 tumor samples, and K-ras mutational status was examined on 85 tumor samples. For methylation analysis, a methylation specific PCR (MS-PCR) method was used. RESULTS: p16 and MGMT promoter methylation was found in 51% (24/47) and 43% (20/47) of CRCs, respectively, and the K-ras mutation was found in 44% (37/85) of CRCs. Comethylation of p16 and MGMT genes was significantly associated with lower aggressiveness of the disease within a two-year period of observation. Only 27% of patients with simultaneous p 16 and MGMT methylation showed the detectible occurrence of metastasis and/or death, compared to 67% of patients without double methylation or with no methylation (3/11 vs 22/33, P < 0.05, χ2-test). In addition, p16 and MGMT comethylation showed a trend toward an association with longer survival in patients with CRCs (35.5 ± 6.0 mo vs 23.1 ± 3.2 mo, P = 0.072, Log-rank test). Progression of the disease within a two-year period was observed in 66% of patients carrying the K-ras mutation, compared to only 19% of patients with wild type K-ras (29/44 vs 7/37, P < 0.001, χ2-test). The presence of the K-ras mutation significantly correlated to shortened overall survival (20.0 ± 1.9 mo vs 37.0 ± 1.8 mo, P < 0.001, Log-rank test). The comethylation of p16 and MGMT genes was significantly associated with lower aggressiveness of the disease even when K-ras mutations were included in the analysis as an independent variable. CONCLUSION: Our data suggest that comethylation of promoters of p 16 and MGMT genes could have a prognostic value in patients with CRC. Specifically, concurrent methylation of both genes correlates with better prognosis. 展开更多
关键词 Colorectal carcinoma DNA methylation P16 MGMT K-ras mutation
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