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SH3结构域序列集的统计耦联分析 被引量:2
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作者 徐海松 李晓琴 曾毅 《物理化学学报》 SCIE CAS CSCD 北大核心 2011年第10期2447-2456,共10页
基于蛋白质可折叠性和热稳定性具有长程相关性(即耦联性)的事实,使用改进的统计耦联方法分析了SH3结构域序列集中存在的耦联性信息.结果表明统计耦联方法采用的保守性计能量可以较好地评估SH3结构域序列集的位点保守性,具有高平均耦联... 基于蛋白质可折叠性和热稳定性具有长程相关性(即耦联性)的事实,使用改进的统计耦联方法分析了SH3结构域序列集中存在的耦联性信息.结果表明统计耦联方法采用的保守性计能量可以较好地评估SH3结构域序列集的位点保守性,具有高平均耦联能量的位点可以基本上对应一些结构或功能上具有重要意义的位点,对统计耦联数据的一些位点扰动个案分析揭示出SH3结构中包含非紧邻扰动和紧邻扰动模式.统计耦联方法结合聚类重排可以对SH3折叠型序列群体中结构核心与非结构核心的位点进行区分,甚至可以区分其中几个功能相关位点的细节差异.SH3结构域中包含了一系列的扰动模式,不同的扰动模式涉及不同的位点组合;各种扰动模式通过一些共有的扰动位点和扰动响应位点相互影响,并最终决定结构中各位点的耦联响应模式.这些耦联信息对于理解蛋白质的序列与结构和功能的关系,以及设计新的蛋白序列有潜在价值. 展开更多
关键词 蛋白质功能:蛋白质稳定性:扰动模式:耦联响应模式:残基进化
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Characterization of root architecture in an applied core collection for phosphorus efficiency of soybean germplasm 被引量:32
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作者 ZHAOJing FUJiabing +6 位作者 LIAOHong HEYong NIANHai HUYueming QIULinjuan DONGYinsan YANXiaolong 《Chinese Science Bulletin》 SCIE EI CAS 2004年第15期1611-1620,共10页
In the present study, we constructed an “ap- plied core collection” for phosphorus (P) efficiency of soy- bean germplasm using a GIS-assisted approach. Systematic characterization and comparative analysis of root ar... In the present study, we constructed an “ap- plied core collection” for phosphorus (P) efficiency of soy- bean germplasm using a GIS-assisted approach. Systematic characterization and comparative analysis of root architec- ture were conducted to evaluate the relationship between root architecture and P efficiency and its possible evolution- ary pattern. Our results found that: i) root architecture was closely related to P efficiency in soybean. Shallow root archi- tecture had better spatial configuration in the P-rich culti- vated soil layer hence higher P efficiency and soybean yield; ii) there was a possible co-evolutionary pattern among shoot type, root architecture and P efficiency. The bush cultivated soybean had a shallow root architecture and high P efficiency, the climbing wild soybean had a deep root architecture and low P efficiency, while the root architecture and P efficiency of semi-wild soybean were intermediate between cultivated and wild soybean; iii) P availability regulated root architec- ture. Soybean roots became shallower with P addition to the topsoil, indicating that the co-evolutionary relationship be- tween root architecture and P efficiency might be attributed to the long-term effects of topsoil fertilization. Our results could provide important theoretical basis for improving soy- bean root traits and P efficiency. 展开更多
关键词 大豆 根部构造 效能 应用核收集 GIS 共进化模式
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