In order to isolate the total cDNA of rice (Oryza sativa L.) epsps gene, RT-PCR was carried out with template of rice first-strand cDNA and primers designed according to rice EPSP synthase genomic sequence obtained in...In order to isolate the total cDNA of rice (Oryza sativa L.) epsps gene, RT-PCR was carried out with template of rice first-strand cDNA and primers designed according to rice EPSP synthase genomic sequence obtained in previous study. A 1 585-bp cDNA fragment was amplified and cloned. The 1 585-bp cDNA contains an open reading frame (ORF) comprising of 1 533 nucleotides (nt) which encodes a 511 residue polypepetides, including 67 amino acids chloroplast transit peptide and 444 amino acids EPSP synthase mature peptide. A comparison between the EPSP synthase of different sources indicates that the mature peptide shows more than 51% identity except for the fungi EPSP synthase and the transit peptide shows considerably less sequence conservation. The copy number of rice epsps gene is estimated to be one copy per haploid rice genome using southern blot. RT-PCR indicated that rice epsps gene is expressed in rice leaves, endosperms and roots and has the highest expression level in leaves.展开更多
We present a finite difference （FD） method for the simulation of seismic wave fields in fractured medium with an irregular （non-fiat） free surface which is beneficial for interpreting exploration data acquired in ...We present a finite difference （FD） method for the simulation of seismic wave fields in fractured medium with an irregular （non-fiat） free surface which is beneficial for interpreting exploration data acquired in mountainous regions. Fractures are introduced through the Coates-Schoenberg approach into the FD scheme which leads to local anisotropic properties of the media where fractures are embedded. To implement surface topography, we take advantage of the boundary-conforming grid and map a rectangular grid onto a curved one. We use a stable and explicit second-order accurate finite difference scheme to discretize the elastic wave equations （in a curvilinear coordinate system） in a 2D heterogeneous transversely isotropic medium with a horizontal axis of symmetry （HTI）. Efficiency tests performed by different numerical experiments clearly illustrate the influence of an irregular free surface on seismic wave propagation in fractured media which may be significant to mountain seismic exploration. The tests also illustrate that the scattered waves induced by the tips of the fracture are re-scattered by the features of the free surface topography. The scattered waves provoked by the topography are re-scattered by the fractures, especially Rayleigh wave scattering whose amplitudes are much larger than others and making it very difficult to identify effective information from the fractures.展开更多
The radial basis function （RBF） interpolation approach proposed by Freedman is used to solve inverse problems encountered in well-logging and other petrophysical issues. The approach is to predict petrophysical prop...The radial basis function （RBF） interpolation approach proposed by Freedman is used to solve inverse problems encountered in well-logging and other petrophysical issues. The approach is to predict petrophysical properties in the laboratory on the basis of physical rock datasets, which include the formation factor, viscosity, permeability, and molecular composition. However, this approach does not consider the effect of spatial distribution of the calibration data on the interpolation result. This study proposes a new RBF interpolation approach based on the Freedman＇s RBF interpolation approach, by which the unit basis functions are uniformly populated in the space domain. The inverse results of the two approaches are comparatively analyzed by using our datasets. We determine that although the interpolation effects of the two approaches are equivalent, the new approach is more flexible and beneficial for reducing the number of basis functions when the database is large, resulting in simplification of the interpolation function expression. However, the predicted results of the central data are not sufficiently satisfied when the data clusters are far apart.展开更多
A simplified procedure is developed to acquire the surface fractal dimension of porous media utilizing the PSD information from mercury porosimetry or other analyses.The self similarity of the inner surface of Sierpi...A simplified procedure is developed to acquire the surface fractal dimension of porous media utilizing the PSD information from mercury porosimetry or other analyses.The self similarity of the inner surface of Sierpinski sponge is analyzed,the result of which demonstrates that the inner surface of Sierpinski sponge is not scale invariant over the whole range of scale transformations.By applying the simplified procedure to analyze and treat the PSD information of Sierpinski sponge over the scale invariant range,it is found that the surface fractal dimension calculated by the scaling relation is in very good agreement with its theoretical value,which virtually provides a theoretical affirmation of the method.展开更多
文摘In order to isolate the total cDNA of rice (Oryza sativa L.) epsps gene, RT-PCR was carried out with template of rice first-strand cDNA and primers designed according to rice EPSP synthase genomic sequence obtained in previous study. A 1 585-bp cDNA fragment was amplified and cloned. The 1 585-bp cDNA contains an open reading frame (ORF) comprising of 1 533 nucleotides (nt) which encodes a 511 residue polypepetides, including 67 amino acids chloroplast transit peptide and 444 amino acids EPSP synthase mature peptide. A comparison between the EPSP synthase of different sources indicates that the mature peptide shows more than 51% identity except for the fungi EPSP synthase and the transit peptide shows considerably less sequence conservation. The copy number of rice epsps gene is estimated to be one copy per haploid rice genome using southern blot. RT-PCR indicated that rice epsps gene is expressed in rice leaves, endosperms and roots and has the highest expression level in leaves.
基金sponsored by the Knowledge Innovation Program of the Chinese Academy of Sciences No.KZCX2-YW-132)the Important National Science and Technology Specific Projects(No.2008ZX05008-006)the National Natural Science Foundation of China Nos.41074033,40721003,40830315,and 40874041)
文摘We present a finite difference （FD） method for the simulation of seismic wave fields in fractured medium with an irregular （non-fiat） free surface which is beneficial for interpreting exploration data acquired in mountainous regions. Fractures are introduced through the Coates-Schoenberg approach into the FD scheme which leads to local anisotropic properties of the media where fractures are embedded. To implement surface topography, we take advantage of the boundary-conforming grid and map a rectangular grid onto a curved one. We use a stable and explicit second-order accurate finite difference scheme to discretize the elastic wave equations （in a curvilinear coordinate system） in a 2D heterogeneous transversely isotropic medium with a horizontal axis of symmetry （HTI）. Efficiency tests performed by different numerical experiments clearly illustrate the influence of an irregular free surface on seismic wave propagation in fractured media which may be significant to mountain seismic exploration. The tests also illustrate that the scattered waves induced by the tips of the fracture are re-scattered by the features of the free surface topography. The scattered waves provoked by the topography are re-scattered by the fractures, especially Rayleigh wave scattering whose amplitudes are much larger than others and making it very difficult to identify effective information from the fractures.
基金supported by the National Science and Technology Major Projects(No.2011ZX05020-008)Well Logging Advanced Technique and Application Basis Research Project of Petrochina Company(No.2011A-3901)
文摘The radial basis function （RBF） interpolation approach proposed by Freedman is used to solve inverse problems encountered in well-logging and other petrophysical issues. The approach is to predict petrophysical properties in the laboratory on the basis of physical rock datasets, which include the formation factor, viscosity, permeability, and molecular composition. However, this approach does not consider the effect of spatial distribution of the calibration data on the interpolation result. This study proposes a new RBF interpolation approach based on the Freedman＇s RBF interpolation approach, by which the unit basis functions are uniformly populated in the space domain. The inverse results of the two approaches are comparatively analyzed by using our datasets. We determine that although the interpolation effects of the two approaches are equivalent, the new approach is more flexible and beneficial for reducing the number of basis functions when the database is large, resulting in simplification of the interpolation function expression. However, the predicted results of the central data are not sufficiently satisfied when the data clusters are far apart.
基金Supported by Visiting Scholar Foundation of Key Laboratory.inUniversity
文摘A simplified procedure is developed to acquire the surface fractal dimension of porous media utilizing the PSD information from mercury porosimetry or other analyses.The self similarity of the inner surface of Sierpinski sponge is analyzed,the result of which demonstrates that the inner surface of Sierpinski sponge is not scale invariant over the whole range of scale transformations.By applying the simplified procedure to analyze and treat the PSD information of Sierpinski sponge over the scale invariant range,it is found that the surface fractal dimension calculated by the scaling relation is in very good agreement with its theoretical value,which virtually provides a theoretical affirmation of the method.
