A novel docking algorithm based on the geometric match is proposed for protein phage peptide complexes. The radii of gyration of protein phage peptide complexes are used as the criterion of geometric match on the inte...A novel docking algorithm based on the geometric match is proposed for protein phage peptide complexes. The radii of gyration of protein phage peptide complexes are used as the criterion of geometric match on the interface, which can be used to screen out the ligand structures with a good geometry fit without any prior description for the contact surface. The energy is evaluated for the structures with a good geometry fit. The algorithm is used to calculate the rigid and flexible docking of four protein phage peptide complexes and predict successfully the native like structures of phage peptides.展开更多
膜蛋白质通过与其他蛋白质相互作用形成膜蛋白质复合物(Membrane protein complexes,MPCs)形式来行使重要的生物学功能,譬如参与细胞-细胞交流、信号传导与分子识别等。MPCs的功能异常会导致多种疾病的发生和临床治疗耐药等问题。研究完...膜蛋白质通过与其他蛋白质相互作用形成膜蛋白质复合物(Membrane protein complexes,MPCs)形式来行使重要的生物学功能,譬如参与细胞-细胞交流、信号传导与分子识别等。MPCs的功能异常会导致多种疾病的发生和临床治疗耐药等问题。研究完整MPCs的组装对于绘制全景式蛋白质-蛋白质相互作用网络,进而揭示膜蛋白质机器的功能具有重要意义。然而,由于MPCs的过表达和纯化仍面临巨大挑战,如何从细胞中实现MPCs的高效提取尤为重要。因此,亟需发展既可确保MPCs提取效率,并能保持其结构稳定性的提取方法。该文对现有MPCs提取方法及其应用进展进行了综述,并对其发展前景加以展望,以期为MPCs的功能解析提供技术支撑。展开更多
文摘A novel docking algorithm based on the geometric match is proposed for protein phage peptide complexes. The radii of gyration of protein phage peptide complexes are used as the criterion of geometric match on the interface, which can be used to screen out the ligand structures with a good geometry fit without any prior description for the contact surface. The energy is evaluated for the structures with a good geometry fit. The algorithm is used to calculate the rigid and flexible docking of four protein phage peptide complexes and predict successfully the native like structures of phage peptides.
文摘膜蛋白质通过与其他蛋白质相互作用形成膜蛋白质复合物(Membrane protein complexes,MPCs)形式来行使重要的生物学功能,譬如参与细胞-细胞交流、信号传导与分子识别等。MPCs的功能异常会导致多种疾病的发生和临床治疗耐药等问题。研究完整MPCs的组装对于绘制全景式蛋白质-蛋白质相互作用网络,进而揭示膜蛋白质机器的功能具有重要意义。然而,由于MPCs的过表达和纯化仍面临巨大挑战,如何从细胞中实现MPCs的高效提取尤为重要。因此,亟需发展既可确保MPCs提取效率,并能保持其结构稳定性的提取方法。该文对现有MPCs提取方法及其应用进展进行了综述,并对其发展前景加以展望,以期为MPCs的功能解析提供技术支撑。
