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猪肠道非致病性且无耐药性大肠杆菌的分离鉴定、生长特性和基因组进化分析
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作者 区炳明 陈晓洁 +6 位作者 李清青 陈锦洪 萧碧扬 钟炜楠 林雪 刘蕾蕾 张敏瑜 《广东农业科学》 CAS 2024年第5期115-124,共10页
【目的】从猪肠道中分离出无毒力基因且无抗生素耐药性的大肠杆菌,并分析其生长性能和遗传进化规律,以期为开发猪用微生态制剂或口服疫苗奠定基础。【方法】采集广东省2个地区养猪场的11头和15头健康成年猪的粪便样本。首先,采用培养方... 【目的】从猪肠道中分离出无毒力基因且无抗生素耐药性的大肠杆菌,并分析其生长性能和遗传进化规律,以期为开发猪用微生态制剂或口服疫苗奠定基础。【方法】采集广东省2个地区养猪场的11头和15头健康成年猪的粪便样本。首先,采用培养方法从麦康凯培养基中分离出疑似大肠杆菌的菌株,通过16S rRNA序列分析鉴定其是否为大肠杆菌菌株;然后,采用PCR方法验证所选大肠杆菌是否含有13种常见的猪致病性大肠杆菌毒力基因,并以7类(14种)抗生素进行药敏试验;最后,对筛选出的优质大肠杆菌菌株进行生长动力学分析,并提取其全基因组DNA,构建全基因组系统进化树。【结果】在260株疑似为大肠杆菌菌株中,经16S rRNA序列分析确认后有206株属于大肠杆菌。其中,107株大肠杆菌不含13种常见毒力基因,25株大肠杆菌对7类(14种)抗生素敏感。在这25株菌株中,有23株非致病性且无抗生素耐药性大肠杆菌(编号为2-9、3-2、3-4、5-1、6-1、6-2、6-9、6-10、8-2、8-9、10-5、B-4、B-6、B-7、B-10、D-10、E-2、E-10、J-1、J-4、K-6、L-6和O-9)的生长性能与大肠杆菌Nissle1917、MG1655相似,其他2株大肠杆菌(编号为6-4和5-2)的生长速度高于Nissle 1917和MG1655。此外,有10株菌株(编号为E-10、E-2、6-4、6-9、8-2、O-9、3-2、6-2、J-1、K-6)耐酸性能较好,可能适合长期定殖于猪胃肠道内。基于SNP核心基因组系统进化树分析,发现这25株菌株中有9株菌株(编号为3-2、6-10、10-5、6-1、8-9、5-2、L-6、O-9、K-6)在系统进化树开端处属于同一大类群,表明它们极可能为猪原生大肠杆菌的祖先群。【结论】综合上述大肠杆菌的抗生素敏感性、生长性能和全基因组进化树和胃液环境耐受性能分析,菌株O-9在这4个方面均具备优势,该菌株与大肠杆菌Nissle 1917、MG1655的生长动力学相似甚至更优,意味着O-9菌株可能是优质的猪肠道原生大肠杆菌,具有极大研究潜力。 展开更多
关键词 原生大肠杆菌 毒力基因 抗生素耐药性 生长特性 遗传进化
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Reevaluation of cortical developmental patterns in Euplotes(s.l.), including a morphogenetic redescription of E.charon (Protozoa,Ciliophora,Euplotida) 被引量:4
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作者 邵晨 马洪钢 +2 位作者 高珊 AL-RASHEID A.Khaled 宋微波 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2010年第3期593-602,共10页
We documented the pattern of cell development in Euplotes charon. The ontogenesis of this species was similar to many of its congeners, except for the formation of the caudal cirri. In E. Charon, a caudal cirrus is fo... We documented the pattern of cell development in Euplotes charon. The ontogenesis of this species was similar to many of its congeners, except for the formation of the caudal cirri. In E. Charon, a caudal cirrus is formed posterior to each of the rightmost two or three dorsal kinety anlage in the proter, and the second rightmost dorsal kinety in the opisthe. In addition, two caudal cirri are formed posterior to the rightmost dorsal kinety in the opisthe. This pattern of development represents a completely new type. Based on our evaluation, and in comparison with previous studies, we also conclude that the pattern of cell development is variable among species in the Euplotes genera. The variation is particularly evident during the formation of frontoventral and caudal cirri. Based on the segmentation pattern of frontal-midventral transverse cirral anlagen, cirri reduction, and migration of frontoventral cirri, we identified five types: the affinis-type, the eurystomus-type, the charon-type, the raikovi-type and orientalis-type. Euplotes (s. l.) can also be divided into three types based on the formation of caudal cirri: focardii-type, vannus-type and charon-type. Indeed, we conclude that the number (one or two) of marginal cirri should be given as much consideration as the genetic separation. Given this, we reassessed the validity of using genetic separation to classify the group. Generally, the morphogenetic data disagreed with the molecular data (SSrRNA gene sequences). Given these discrepancies, it is too early to draw conclusions on the systematic arrangement of this species-rich taxon. 展开更多
关键词 EUPLOTES CILIATE ONTOGENESIS phylogeny sequences
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Soil Nitrogen Availability Is Reflected in the Bacterial Pathway 被引量:2
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作者 V.KRIVTSOV B.S.GRIFFITHS +4 位作者 K.LIDDELL A.GARSIDE R.SALMOND T.BEZGINOVA J.THOMPSON6 《Pedosphere》 SCIE CAS CSCD 2011年第1期26-30,共5页
Measurements of concentrations of easily extractable soil nitrogen(N) were carried out on samples collected at the Heron Wood Reserve,Scotland,concurrently with investigations of N associated with total microbial biom... Measurements of concentrations of easily extractable soil nitrogen(N) were carried out on samples collected at the Heron Wood Reserve,Scotland,concurrently with investigations of N associated with total microbial biomass and the abundances of bacteria,fungi,and invertebrates.Soil biota at the studied site appeared to be limited by N.There was a remarkable difference between the ambient(i.e.,easily extractable N) and biomass nitrogen.The abundance data of bacteria,protozoa and nematodes significantly negatively correlated with ambient N but showed positive correlations with the total microbial N content.There were,however,remarkable differences between the correlation patterns exhibited by the fungal and the bacterial pathways,as fungi did not show any correlations with chemical variables.These differences should be taken into account whilst interpreting biological interactions both at this important site and elsewhere. 展开更多
关键词 BACTERIA FUNGI nematodes PROTOZOA WOODLAND
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