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基因变异鉴定的深度学习方法与研究展望
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作者 张倩 《现代计算机》 2021年第6期74-77,共4页
近年来.深度学习的火热使得传统的基因变异鉴定领域发生了巨大的变化。研究人员将深度学习方法与传统基因变异鉴定方法相结合,试图寻找基因变异鉴定的新方向。本文首先介绍目前两类不同的深度学习用于基因变异鉴定的方法,对其进行总结,... 近年来.深度学习的火热使得传统的基因变异鉴定领域发生了巨大的变化。研究人员将深度学习方法与传统基因变异鉴定方法相结合,试图寻找基因变异鉴定的新方向。本文首先介绍目前两类不同的深度学习用于基因变异鉴定的方法,对其进行总结,着重分析两种方法的特点并进行对比。最后对未来深度学习方法的基因变异鉴定的研究方向,进行展望。 展开更多
关键词 基因变异鉴定 深度学习 SNP检测 研究展望
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滇丁香化学诱变的多倍体及其鉴定研究
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作者 王乐乐 卢晓雨 +1 位作者 关文灵 李叶芳 《中国农学通报》 2024年第1期38-45,共8页
为获得滇丁香新种质、选育抗性新品种,用不同浓度的氨磺灵溶液浸泡滇丁香种子,以种子下胚轴膨大视为变异株,统计变异率和发芽率,通过形态学观察、气孔观察、染色体计数及流式细胞仪检测确定其倍性。结果表明:15μmol/L氨磺灵浸泡种子24 ... 为获得滇丁香新种质、选育抗性新品种,用不同浓度的氨磺灵溶液浸泡滇丁香种子,以种子下胚轴膨大视为变异株,统计变异率和发芽率,通过形态学观察、气孔观察、染色体计数及流式细胞仪检测确定其倍性。结果表明:15μmol/L氨磺灵浸泡种子24 h为滇丁香多倍体诱导最佳方法,变异率达60.1%,发芽率为66.7%,获得2株四倍体植株;25μmol/L氨磺灵诱导24 h,变异率为50%,获得1株八倍体植株。滇丁香变异植株在株高、叶长、叶厚方面均与对照植株呈显著差异,多倍体滇丁香植株株型矮小、叶片畸形较圆润且变厚、叶色较深、叶毛茎毛粗长。多倍体植株气孔的长和宽及保卫细胞的长和宽均显著大于二倍体植株,且气孔密度显著小于二倍体植株。经流式细胞仪检测,不同倍性植株DNA含量近似倍数关系。经染色体计数,滇丁香二倍体植株染色体数目为2n=44,四倍体植株4n=88。四倍体滇丁香丙二醛含量极显著低于二倍体,而脯氨酸含量极显著高于二倍体。 展开更多
关键词 滇丁香 多倍体诱导 氨磺灵 变异鉴定 染色体 流式细胞仪
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基于SRAP和SCoT标记的猕猴桃种质遗传多样性分析及变异材料鉴定 被引量:9
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作者 张坤 周源洁 +4 位作者 李尧 刘芯伶 郭玉琪 夏惠 梁东 《果树学报》 CAS CSCD 北大核心 2021年第12期2059-2071,共13页
【目的】探明59份猕猴桃品种/种质的遗传背景及鉴定果肉全红型材料(‘H-16’)的亲缘关系。【方法】利用SRAP及SCoT两种分子标记进行遗传多样性分析及变异鉴定。【结果】筛选出的12对SRAP引物和16条SCoT引物在59份材料中分别扩增出多态... 【目的】探明59份猕猴桃品种/种质的遗传背景及鉴定果肉全红型材料(‘H-16’)的亲缘关系。【方法】利用SRAP及SCoT两种分子标记进行遗传多样性分析及变异鉴定。【结果】筛选出的12对SRAP引物和16条SCoT引物在59份材料中分别扩增出多态性条带125条和143条,平均多态性比率为99.07%和100%,平均遗传相似系数为0.668和0.640,其中‘H-16’与红阳的遗传相似系数最高,分别为0.952和0.930,表明两者遗传背景高度一致。SRAP及SCoT两种分子标记分别将59份猕猴桃材料分为4组和8组,部分中华猕猴桃与多数美味猕猴桃种质聚为一类,显示中华猕猴桃与美味猕猴桃种间关系较近,存在频繁的基因交流现象。筛选出的3对SRAP引物和2条SCoT引物,在‘H-16’和红阳中扩增出差异条带,表明‘H-16’为红阳的变异材料,且12对SRAP引物将全部中华系红肉猕猴桃聚为一类,可作为筛选控制红色性状位点的候选SRAP引物。【结论】SRAP和SCoT分子标记有效地将59份猕猴桃划分成4组和8组,表明其遗传背景存在差异,且遗传多样性较为丰富,两种标记都可用,SCoT更高效。两种标记都可用于猕猴桃变异材料的早期鉴定,且成功鉴定‘H-16’为红阳的色泽变异品种(系),为后期开展种质资源评价和新种质选育提供技术参考和理论依据。 展开更多
关键词 猕猴桃 SRAP SCoT 遗传多样性 变异鉴定
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桑树多倍体化学诱导剂的筛选及对不同桑树材料的诱变效果 被引量:4
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作者 方荣俊 张英华 +4 位作者 扈东青 赵卫国 林强 刘利 程嘉翎 《蚕业科学》 CAS CSCD 北大核心 2010年第6期1004-1010,共7页
为了高效获取桑树多倍体育种的优良植株,以形态变异率为考核指标,筛选化学诱导剂组合,并对19个桑树品种或杂交组合的不同材料进行诱导处理,改进和丰富桑树多倍体化学诱变技术体系。初步筛选出最佳诱导剂组合0.2%秋水仙素+2%二甲基亚砜(D... 为了高效获取桑树多倍体育种的优良植株,以形态变异率为考核指标,筛选化学诱导剂组合,并对19个桑树品种或杂交组合的不同材料进行诱导处理,改进和丰富桑树多倍体化学诱变技术体系。初步筛选出最佳诱导剂组合0.2%秋水仙素+2%二甲基亚砜(DMSO),用该诱导剂组合分别以滴液法、琼脂涂抹法、注射法诱导处理桑树幼苗顶芽、春伐桑幼芽、桑树雌花,其诱变率分别为30.96%、10.12%、2.56%,而应用该诱导剂组合对桑树种子浸渍诱导9d,可100%获得形态变异植株,其中有11.9%的突变植株成活。以稀释400倍的氟乐灵溶液替代秋水仙素作为诱导剂,采用浸渍法对桑树种子诱导处理5d,其诱变效果与用0.2%秋水仙素+2%DMSO浸渍9d的效果相当。通过植株形态观察和染色体鉴定,确认从12个供试桑树品种或杂交组合中获得了四倍体植株或枝条,可作为桑树多倍体育种的优良亲本材料。 展开更多
关键词 桑树 多倍体 化学诱导 诱变材料 化学试剂 处理方法 变异鉴定
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大豆总DNA直接导入法培育优质高蛋白玉米材料研究 被引量:18
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作者 丁明忠 潘光堂 +3 位作者 荣廷昭 杨婉身 张莉萍 付凤玲 《西南农业学报》 CSCD 2001年第1期8-12,共5页
利用外源总DNA转导的花粉管通道法和经我们发展的减压渗透法将大豆总DNA导入玉米自交系统 4 8- 2和S3 7,在 74 3份后代材料中筛选出 8份高蛋白含量变异材料 ,它们的蛋白质与受体相比提高 2 0 %以上。用种子蛋白SDS -PAGE、谷氨酸 -草酰... 利用外源总DNA转导的花粉管通道法和经我们发展的减压渗透法将大豆总DNA导入玉米自交系统 4 8- 2和S3 7,在 74 3份后代材料中筛选出 8份高蛋白含量变异材料 ,它们的蛋白质与受体相比提高 2 0 %以上。用种子蛋白SDS -PAGE、谷氨酸 -草酰乙酸同工酶及RAPD等分析方法对变异材料及其受体进行了鉴定分析 ,同时也对此 8份变异材料的自交后代进行了筛选和在田间比较观察了变异材料与受体的农艺性状。结果表明 ,这些高蛋白变异材料与受体 4 8- 2和S3 7在遗传上存在明显的差异 ,在其自交后代中仍有部分株系保持了高蛋白含量特性。此外 ,4 8- 2的变异材料在植株形态、花药颜色上有明显变化。上述结果初步证明高蛋白特性是可遗传的 ,这为选育高蛋白玉米新自交系提供了新材料 。 展开更多
关键词 玉米 外源总DNA导入 变异材料鉴定 SDS-PAGF RAPD 高蛋白 品质育种
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A Preliminary Study on Genetic Variation of g E Gene of an Epidemic Pseudorabies Virus Strain and Its Pathogenicity to Piglets 被引量:3
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作者 郭容利 王继春 +4 位作者 茅爱华 温立斌 李彬 倪艳秀 何孔旺 《Agricultural Science & Technology》 CAS 2015年第5期926-930,共5页
[Objective] This study aimed to investigate the genetic variation of g E gene of an epidemic pseudorabies virus(PRV) strain and its pathogenicity to piglets. [Method] By serial passage in Vero cells, a PRV strain wa... [Objective] This study aimed to investigate the genetic variation of g E gene of an epidemic pseudorabies virus(PRV) strain and its pathogenicity to piglets. [Method] By serial passage in Vero cells, a PRV strain was isolated from the brain tissues of stillborn fetuses delivered by sows with suspected PRV infection and preliminarily identified by PCR. g E gene of the isolated PRV strain was amplified and sequenced for phylogenetic analysis. In addition, the pathogenicity of the isolated PRV strain to 6-week-old piglets was evaluated. [Result] A PRV strain was successfully isolated and named PRV N5 B strain, which could proliferate in Vero cells and TCID50 of the 15 thgeneration virus liquid reached 10^7.125/0.1 ml. Specific bands could be amplified by PCR. g E gene in the isolated PRV strain was 1 740 bp in length. A phylogenetic tree was constructed based on full-length g E sequences, which showed that PRV N5 B strain and PRV strains isolated since 2012 were clustered into the same independent category and shared 99.7%-100% homology of nucleotide sequences. Compared with related sequences published previously, there were insertions of three consecutive bases at two loci. Animal experiments showed that intranasal inoculation of 6-week-old piglets with 2 ml of PRV N5 B strain(10^6/0.1 ml) led to a mortality rate of 100%. [Conclusion] In this study,genetic variability of g E gene in PRV N5 B isolate and its pathogenicity to piglets were analyzed, which provided a theoretical basis for the development of new vaccines to prevent and control porcine pseudorabies. 展开更多
关键词 Pseudorabies virus ISOLATION Identification Genetic variation PATHOGENICITY
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Genetic Variation of Porcine Circovirus Type 2 Isolate 201105ZJ
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作者 王小敏 何孔旺 +5 位作者 汪伟 周忠涛 杨光远 茅爱华 俞正玉 倪艳秀 《Agricultural Science & Technology》 CAS 2014年第11期1860-1864,1887,共6页
[Objective] This study aimed to investigate the genetic variation of porcine circovirus type 2 (PCV2) in China. [Method] The strain was isolated from infected samples by cel passage and preliminarily identified by P... [Objective] This study aimed to investigate the genetic variation of porcine circovirus type 2 (PCV2) in China. [Method] The strain was isolated from infected samples by cel passage and preliminarily identified by PCR and IFA. Ful-length genome of the isolated strain was obtained by specific amplification for homology and phylogenetic analysis. [Result] A PCV2 strain was successful y isolated and named 201105ZJ, which could proliferate in PK15 cel lines. Specific fragments could be amplified by specific PCR assay. According to results of IFA assay, specif-ic immunofluorescence was observed; the TCID50 was low (102.67); the ful-length genome sequence of the isolated strain was 1 768 bp, sharing 94.1%-96.8% ho-mology with 13 reference strains; to be specific, the isolated strain exhibited the highest homology of 96.8% with AF055392PCV2a; the isolated strain 201105ZJ and reference strain AF055392 belonged to genotype PCV2a, exhibiting a distant genetic relationship with genotype PCV2c. [Conclusion] Characteristics of genetic variation of PCV2 isolate 201105ZJ provided theoretical basis for vaccine development, investi-gation of PCV2 pathogenesis, and prevention and control of porcine circovirus-as-sociated diseases (PCVAD) in East China. 展开更多
关键词 Porcine circovirus type 2 Isolation Identification Genetic variation
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Improvement of Wild Rice Oryza Longistaminata through Mutation Induction 被引量:1
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作者 Fousseyni Cisse Medoune Papa Khouma 《Journal of Food Science and Engineering》 2016年第2期82-89,共8页
Influence of a mutation to improve the undesirable traits (shattering, red caryopsis etc.) of wild rice O. longistaminata while preserving its useful genes by radiation 20 Kr gamma rays from 60Co was studied. The mu... Influence of a mutation to improve the undesirable traits (shattering, red caryopsis etc.) of wild rice O. longistaminata while preserving its useful genes by radiation 20 Kr gamma rays from 60Co was studied. The mutants issued this irradiation were crossed with the interspecific variety SIK385-b-42-28-28 (O. glaberrima x O. sativa). Irradiation followed by crossing with interspecific variety generated a large genetic variability, in the subsequent generations, in plant height, maturity, non-shattering grain, kernel colour, spikelets fertility, panicle length, and grain size. This has resulted in identification of promising mutants which possess all the traits of cultivated rice O. sativa (white kernel, non-shattering grain, secondary branchies etc.). During 2012 rainy season, nineteen selected mutants from M5 and M7 generations were evaluated for yield potential in replicated trials at Longorola station. 展开更多
关键词 Wild rice Oryza longistaminata MUTAGENESIS mutants.
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Identification of A Field Strain of Infectious Laryngotracheitis Virus Isolated from Jiangsu Province
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作者 ZHANG Jian-Jun WU Xiao-chun +4 位作者 MA Jian-yun DING Hai-jun ZHANG Wei ZHOU Yang ZHOU Yu-shuang 《Animal Husbandry and Feed Science》 CAS 2011年第1期22-24,共3页
[ Objective] To isolate and identify infectious laryngotracheitis virus (ILTV) from chickens. [ Method] Larynx, trachea, liver and other organs were collected from infectious laryngotracheitis (ILT)-suspected laye... [ Objective] To isolate and identify infectious laryngotracheitis virus (ILTV) from chickens. [ Method] Larynx, trachea, liver and other organs were collected from infectious laryngotracheitis (ILT)-suspected layers. And ILTV TK gene was amplified from these specimens by PCR for initial diagnosis. Virus fluid was isolated and inoculated into SPF chicken embryos via allantoic cavity and chorioallantoic membrane (CAM), respectively. Hyaluronic acid in allantoic fluid was detected, and CAM lesions were observed. The definite diagnosis was performed through animal regression test. [Result] A 1.3 kbp fragment was amplified from larynx and its secretion of the ILT-suspected chickens. And its amino acid sequence had 98.5% homology to that of ILTV TKgene published in GenBank. After the chicken embryos were inoculated with the isolated ILFV fluid, pox spots, giant polynuclear syncytial cells having intranuclear inclusion bodies were observed in CAM. After being challenged by the IL TV fluid, the chickens showed typical respiratory symptoms and pathological changes of ILT. [Coudusion] A field strain named ILTV XZ09 was isolated from larynx and its secretion of ILT-suspected chickens. 展开更多
关键词 Infectious laryngotracheitis Infectious laryngotracheitis virus ISOLATION IDENTIFICATION
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大豆生育期E1、E2、E3和E4基因的研究与应用 被引量:4
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作者 吕世翔 王萍 +1 位作者 孙明明 夏正俊 《中国农业大学学报》 CAS CSCD 北大核心 2019年第2期12-19,共8页
大豆E1~E4基因作为对大豆生育期影响最大的E系列基因,与大豆品种生态类型密切相关。为总结大豆主要生育期基因E1~E4的研究进展和应用现状,促进中国大豆生育期育种模式的形成,本研究综述E1~E4基因不同变异类型、变异类型鉴定方法和调... 大豆E1~E4基因作为对大豆生育期影响最大的E系列基因,与大豆品种生态类型密切相关。为总结大豆主要生育期基因E1~E4的研究进展和应用现状,促进中国大豆生育期育种模式的形成,本研究综述E1~E4基因不同变异类型、变异类型鉴定方法和调控大豆光周期机理的研究进展及大豆群体E1~E4基因型分析在大豆品种生长适应性研究中的应用,以期为大豆生育期遗传调控机理的全面深入研究提供参考,同时为适应不同生态区域的大豆遗传育种工作提供依据。 展开更多
关键词 大豆 生育期 生态适应性 E1~E4 变异类型鉴定 应用
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