Hepatitis A virus(HAV)is one of the most common infectious etiologies of acute hepatitis worldwide.The virus is known to be transmitted fecal-orally,resulting in symptoms ranging from asymptomatic infection to fulmina...Hepatitis A virus(HAV)is one of the most common infectious etiologies of acute hepatitis worldwide.The virus is known to be transmitted fecal-orally,resulting in symptoms ranging from asymptomatic infection to fulminant hepatitis.HAV can also be transmitted through oral-anal sex.Residents from regions of low endemicity for HAV infection often remain susceptible in their adulthood.Therefore,clustered HAV infections or outbreaks of acute hepatitis A among men who have sex with men and injecting drug users have been reported in countries of low endemicity for HAV infection.The duration of HAV viremia and stool shedding of HAV may be longer in human immunodeficiency virus(HIV)-positive individuals compared to HIV-negative individuals with acute hepatitis A.Current guidelines recommend HAV vaccination for individuals with increased risks of exposure to HAV(such as from injecting drug use,oral-anal sex,travel to or residence in endemic areas,frequent clotting factor or blood transfusions)or with increased risks of fulminant disease(such as those with chronic hepatitis).The seroconversion rates following the recommended standard adult dosing schedule(2doses of HAVRIX 1440 U or VAQTA 50 U administered6-12 mo apart)are lower among HIV-positive individuals compared to HIV-negative individuals.While the response rates may be augmented by adding a booster dose at week 4 sandwiched between the first dose and the 6-mo dose,the need of booster vaccination remain less clear among HIV-positive individuals who have lost anti-HAV antibodies.展开更多
Objective: The aim of the study was to investigate the association of esophageal squamous cell carcinoma (ESCC) genetic susceptibility with the single nucleotide polymorphism (SNP) rs679620 (-Lys45Glu-) in exon...Objective: The aim of the study was to investigate the association of esophageal squamous cell carcinoma (ESCC) genetic susceptibility with the single nucleotide polymorphism (SNP) rs679620 (-Lys45Glu-) in exon 2 of the romp3 gene, and the population in high incidence region of Henan (China) was selected for exploring the mechanism by case-control study, Methods: The romp3 SNP was genotyped by PCR-RFLP analysis in total 605 cases of Henan population, in which there were 227 ESCC cases and 197 controls of An-yang in Henan plus 181 controls of emigrants in Hubei from Xi-chuan of Henan, China. Results: The statistic data showed that GIG and G/A genotype frequencies of SNP rs679620 were significantly different between the controls of emigrants of Xi-chuan in Hubei and controls of An-yang in Henan (P 〈 0.01) also the ESCC cases of An-yang in Henan (P 〈 0.01), respectively. Conclusion: This study suggests that the SNP rs679620 (-Lys45Glu-) in exon 2 of the mmp3 gene might be associated with ESCC genetic susceptibility.展开更多
Estuaries are environments where freshwater and seawater mix and they display various salinity profiles.The construction of river barrages and dams has rapidly changed these environments and has had a wide range of im...Estuaries are environments where freshwater and seawater mix and they display various salinity profiles.The construction of river barrages and dams has rapidly changed these environments and has had a wide range of impacts on plankton communities.To understand the dynamics of such communities,researchers need accurate and rapid techniques for detecting plankton species.We evaluated the diversity of eukaryotic plankton over a salinity gradient by applying a metagenomics tool at the Nakdong River estuary in Korea.Environmental samples were collected on three dates during summer and autumn of 2011 at the Eulsukdo Bridge at the mouth of that river.Amplifying the 18 S rDNA allowed us to analyze 456 clones and 122 phylotypes.Metagenomic sequences revealed various taxonomic groups and cryptic genetic variations at the intra-and inter-specific levels.By analyzing the same station at each sampling date,we observed that the phylotypes presented a salinity-related pattern of diversity in assemblages.The variety of species within freshwater samples reflected the rapid environmental changes caused by freshwater inputs.Dinophyceae phylotypes accounted for the highest proportion of overall diversity in the seawater samples.Euryhaline diatoms and dinoflagellates were observed in the freshwater,brackish and seawater samples.The biological data for species composition demonstrate the transitional state between freshwater and seawater.Therefore,this metagenomics information can serve as a biological indicator for tracking changes in aquatic environments.展开更多
Peutz-Jeghers syndrome (PJS), also known as hereditary intestinal polyposis syndrome, is an autosomal dominant genetic disease characterized by the development of benign hamartomatous polyps in the gastrointestinal tr...Peutz-Jeghers syndrome (PJS), also known as hereditary intestinal polyposis syndrome, is an autosomal dominant genetic disease characterized by the development of benign hamartomatous polyps in the gastrointestinal tract and hyperpigmented macules on the lips and oral mucosa. Here, we reported 5 cases of PJS and our experience about its diagnosis and treatment.展开更多
Ten microsatellite markers were used to analyze the levels of genetic diversity and inbreeding in a hatchery release population of Rhopilema esculentum Kishinouye (Scypbozoa: Rhizostomatidae). A total of 85 alleles...Ten microsatellite markers were used to analyze the levels of genetic diversity and inbreeding in a hatchery release population of Rhopilema esculentum Kishinouye (Scypbozoa: Rhizostomatidae). A total of 85 alleles were detected in 600 individuals. Within-population levels of observed (Ho) and expected (He) heterozygosity ranged from 0.152 to 0.839 (mean=0.464) and from 0.235 to 0.821 (mean=0.618), respectively. The polymorphism information content (PIC) of each marker ranged from 0.207 to 0.795 with an average of 0.580, indicating that the hatchery population maintained a high level of genetic diversity. Inbreeding levels were estimated in the hatchery population and the inbreeding coefficient was 0.203. This result revealed that a certain level of inbreeding occurred within the population. Meanwhile, we also determined genetic diversity at the clone level. Several polyps from the same scyphistomae were genotyped at the ten microsatellite loci and there was virtually no difference in their genotypes. Furthermore, we calculated the probabilities of exclusion. When both parents were known, the average exclusion probability often loci was 99.99%. Our data suggest that the ten microsatellite markers can not only be used to analyze the identity of individuals but they can also be applied to parentage identification. Our research provides a theoretical basis and technical support for genetic diversity detection and reasonable selection of R. esculentum hatchery populations. These findings support the use of releasing studies and conservation of R. esculentum germplasm resources.展开更多
Characteristic Basis Function Method (CBFM) is a novel approach for analyzing the ElectroMagnetic (EM) scattering from electrically large objects. Based on dividing the studied object into small blocks, the CBFM is su...Characteristic Basis Function Method (CBFM) is a novel approach for analyzing the ElectroMagnetic (EM) scattering from electrically large objects. Based on dividing the studied object into small blocks, the CBFM is suitable for parallel computing. In this paper, a static load balance parallel method is presented by combining Message Passing Interface (MPI) with Adaptively Modified CBFM (AMCBFM). In this method, the object geometry is partitioned into distinct blocks, and the serial number of blocks is sent to related nodes according to a certain rule. Every node only needs to calculate the information on local blocks. The obtained results confirm the accuracy and efficiency of the proposed method in speeding up solving large electrical scale problems.展开更多
Cervus sichuanicus is a species of sika deer (Cervus nippon Group). To date, research has mainly focused on quantity surveying and behavior studies, with genetic information on this species currently deficient. To p...Cervus sichuanicus is a species of sika deer (Cervus nippon Group). To date, research has mainly focused on quantity surveying and behavior studies, with genetic information on this species currently deficient. To provide scientific evidence to assist in the protection of this species, we collected Sichuan sika deer fecal samples from the Sichuan Tiebu Nature Reserve (TNR) and extracted DNA from those samples. Microsatellite loci of bovine were used for PCR amplification. After GeneScan, the genotype data were used to analyze the genetic diversity and population structure of the Sichuan sika deer in TNR. Results showed that the average expected heterozygosity of the Sichuan sika deer population in TNR was 0.562, equivalent to the average expected heterozygosity of endangered animals, such as Procapra przewalsldi. Furthermore, 8 of 9 microsatellite loci significantly deviated from the Hardy-Weinberg equilibrium and two groups existed within the Sichuan sika deer TNR population. This genetic structure may be caused by a group of Manchurian sika deer (Cervus hortulorum) released in TNR.展开更多
The level of genetic variation among individuals may affect performance by reducing the ability of prey to detect and escape from predators if lack of genetic variation reduces flight ability directly or indirectly th...The level of genetic variation among individuals may affect performance by reducing the ability of prey to detect and escape from predators if lack of genetic variation reduces flight ability directly or indirectly through reduced parasite resistance. We investigated vulnerability of common avian prey species to predation by the sparrowhawk Accipiter nisus and the goshawk A. gentilis in relation to an index of genetic similarity among adults of potential prey species. We estimated a prey vulnerability in- dex that reflects the abundance of prey relative to the expected abundance according to local population density, and related this index to band sharing coefficients based on analyses of minisatellites for adults in local breeding populations. The prey vulnera- bility index was positively correlated with the band sharing coefficient in both predators, even when controlling for potentially confounding variables. These findings indicate that prey species with high band sharing coefficients, and hence low levels of genetic variation, are more readily caught by avian predators. Therefore, predation may constitute a major cost of low levels of genetic variation in extant populations of prey [Current Zoology 61(1): 1-9, 2015].展开更多
We study global asymptotic stability for an SIS epidemic model with maturation delay proposed by K. Cooke, P. van den Driessche and X. Zou, Interaction of maturation delay and nonlinear birth in population and epidemi...We study global asymptotic stability for an SIS epidemic model with maturation delay proposed by K. Cooke, P. van den Driessche and X. Zou, Interaction of maturation delay and nonlinear birth in population and epidemic models, J. Math. Biol. 39(4) (1999) 332-352. It is assumed that the population has a nonlinear birth term and disease causes death of infective individuals. By using a monotone iterative method, we establish sufficient conditions for the global stability of an endemic equilibrium when it exists dependently on the monotone property of the birth rate function. Based on the analysis, we further study the model with two specific birth rate functions BI(N) = be-aN and B3(N) = A/N + c, where N denotes the total population. For each model, we obtain the disease induced death rate which guarantees the global stability of the endemic equilibrium and this gives a positive answer for an open problem by X. Q. Zhao and X. Zou, Threshold dynamics in a delayed SIS epidemic model, J. Math. Anal. Appl. 257(2) (2001) 282-291.展开更多
文摘Hepatitis A virus(HAV)is one of the most common infectious etiologies of acute hepatitis worldwide.The virus is known to be transmitted fecal-orally,resulting in symptoms ranging from asymptomatic infection to fulminant hepatitis.HAV can also be transmitted through oral-anal sex.Residents from regions of low endemicity for HAV infection often remain susceptible in their adulthood.Therefore,clustered HAV infections or outbreaks of acute hepatitis A among men who have sex with men and injecting drug users have been reported in countries of low endemicity for HAV infection.The duration of HAV viremia and stool shedding of HAV may be longer in human immunodeficiency virus(HIV)-positive individuals compared to HIV-negative individuals with acute hepatitis A.Current guidelines recommend HAV vaccination for individuals with increased risks of exposure to HAV(such as from injecting drug use,oral-anal sex,travel to or residence in endemic areas,frequent clotting factor or blood transfusions)or with increased risks of fulminant disease(such as those with chronic hepatitis).The seroconversion rates following the recommended standard adult dosing schedule(2doses of HAVRIX 1440 U or VAQTA 50 U administered6-12 mo apart)are lower among HIV-positive individuals compared to HIV-negative individuals.While the response rates may be augmented by adding a booster dose at week 4 sandwiched between the first dose and the 6-mo dose,the need of booster vaccination remain less clear among HIV-positive individuals who have lost anti-HAV antibodies.
基金Supported by a grant from the Natural Sciences Foundation of State Ethnic Affairs Commission of China (No. 07ZN09)
文摘Objective: The aim of the study was to investigate the association of esophageal squamous cell carcinoma (ESCC) genetic susceptibility with the single nucleotide polymorphism (SNP) rs679620 (-Lys45Glu-) in exon 2 of the romp3 gene, and the population in high incidence region of Henan (China) was selected for exploring the mechanism by case-control study, Methods: The romp3 SNP was genotyped by PCR-RFLP analysis in total 605 cases of Henan population, in which there were 227 ESCC cases and 197 controls of An-yang in Henan plus 181 controls of emigrants in Hubei from Xi-chuan of Henan, China. Results: The statistic data showed that GIG and G/A genotype frequencies of SNP rs679620 were significantly different between the controls of emigrants of Xi-chuan in Hubei and controls of An-yang in Henan (P 〈 0.01) also the ESCC cases of An-yang in Henan (P 〈 0.01), respectively. Conclusion: This study suggests that the SNP rs679620 (-Lys45Glu-) in exon 2 of the mmp3 gene might be associated with ESCC genetic susceptibility.
基金Supported by the East Asian Seas Time Series-I(No.EAST-I)the Ministry of Oceans and Fisheries,Korea,the"Development of Microbial Metagenomic Techniques for a Fine-Scale Seawater Mass Analysis"through the Ministry of Education of the Republic of Koreathe National Research Foundation of Korea(No.NRF-2013R1A1A2006915)
文摘Estuaries are environments where freshwater and seawater mix and they display various salinity profiles.The construction of river barrages and dams has rapidly changed these environments and has had a wide range of impacts on plankton communities.To understand the dynamics of such communities,researchers need accurate and rapid techniques for detecting plankton species.We evaluated the diversity of eukaryotic plankton over a salinity gradient by applying a metagenomics tool at the Nakdong River estuary in Korea.Environmental samples were collected on three dates during summer and autumn of 2011 at the Eulsukdo Bridge at the mouth of that river.Amplifying the 18 S rDNA allowed us to analyze 456 clones and 122 phylotypes.Metagenomic sequences revealed various taxonomic groups and cryptic genetic variations at the intra-and inter-specific levels.By analyzing the same station at each sampling date,we observed that the phylotypes presented a salinity-related pattern of diversity in assemblages.The variety of species within freshwater samples reflected the rapid environmental changes caused by freshwater inputs.Dinophyceae phylotypes accounted for the highest proportion of overall diversity in the seawater samples.Euryhaline diatoms and dinoflagellates were observed in the freshwater,brackish and seawater samples.The biological data for species composition demonstrate the transitional state between freshwater and seawater.Therefore,this metagenomics information can serve as a biological indicator for tracking changes in aquatic environments.
文摘Peutz-Jeghers syndrome (PJS), also known as hereditary intestinal polyposis syndrome, is an autosomal dominant genetic disease characterized by the development of benign hamartomatous polyps in the gastrointestinal tract and hyperpigmented macules on the lips and oral mucosa. Here, we reported 5 cases of PJS and our experience about its diagnosis and treatment.
基金Supported by the International Science&Technology Cooperation Program of China(No.2013DFA31410)the Adaptive Response of Fishery Species to Environmental Changes and their Effects on Population Dynamics(No.2015CB453303)
文摘Ten microsatellite markers were used to analyze the levels of genetic diversity and inbreeding in a hatchery release population of Rhopilema esculentum Kishinouye (Scypbozoa: Rhizostomatidae). A total of 85 alleles were detected in 600 individuals. Within-population levels of observed (Ho) and expected (He) heterozygosity ranged from 0.152 to 0.839 (mean=0.464) and from 0.235 to 0.821 (mean=0.618), respectively. The polymorphism information content (PIC) of each marker ranged from 0.207 to 0.795 with an average of 0.580, indicating that the hatchery population maintained a high level of genetic diversity. Inbreeding levels were estimated in the hatchery population and the inbreeding coefficient was 0.203. This result revealed that a certain level of inbreeding occurred within the population. Meanwhile, we also determined genetic diversity at the clone level. Several polyps from the same scyphistomae were genotyped at the ten microsatellite loci and there was virtually no difference in their genotypes. Furthermore, we calculated the probabilities of exclusion. When both parents were known, the average exclusion probability often loci was 99.99%. Our data suggest that the ten microsatellite markers can not only be used to analyze the identity of individuals but they can also be applied to parentage identification. Our research provides a theoretical basis and technical support for genetic diversity detection and reasonable selection of R. esculentum hatchery populations. These findings support the use of releasing studies and conservation of R. esculentum germplasm resources.
文摘Characteristic Basis Function Method (CBFM) is a novel approach for analyzing the ElectroMagnetic (EM) scattering from electrically large objects. Based on dividing the studied object into small blocks, the CBFM is suitable for parallel computing. In this paper, a static load balance parallel method is presented by combining Message Passing Interface (MPI) with Adaptively Modified CBFM (AMCBFM). In this method, the object geometry is partitioned into distinct blocks, and the serial number of blocks is sent to related nodes according to a certain rule. Every node only needs to calculate the information on local blocks. The obtained results confirm the accuracy and efficiency of the proposed method in speeding up solving large electrical scale problems.
基金supported by the National Natural Science Foundation of China(30870308 and 31071944)the Shanghai Rising-Star Program(10QA1402200)
文摘Cervus sichuanicus is a species of sika deer (Cervus nippon Group). To date, research has mainly focused on quantity surveying and behavior studies, with genetic information on this species currently deficient. To provide scientific evidence to assist in the protection of this species, we collected Sichuan sika deer fecal samples from the Sichuan Tiebu Nature Reserve (TNR) and extracted DNA from those samples. Microsatellite loci of bovine were used for PCR amplification. After GeneScan, the genotype data were used to analyze the genetic diversity and population structure of the Sichuan sika deer in TNR. Results showed that the average expected heterozygosity of the Sichuan sika deer population in TNR was 0.562, equivalent to the average expected heterozygosity of endangered animals, such as Procapra przewalsldi. Furthermore, 8 of 9 microsatellite loci significantly deviated from the Hardy-Weinberg equilibrium and two groups existed within the Sichuan sika deer TNR population. This genetic structure may be caused by a group of Manchurian sika deer (Cervus hortulorum) released in TNR.
文摘The level of genetic variation among individuals may affect performance by reducing the ability of prey to detect and escape from predators if lack of genetic variation reduces flight ability directly or indirectly through reduced parasite resistance. We investigated vulnerability of common avian prey species to predation by the sparrowhawk Accipiter nisus and the goshawk A. gentilis in relation to an index of genetic similarity among adults of potential prey species. We estimated a prey vulnerability in- dex that reflects the abundance of prey relative to the expected abundance according to local population density, and related this index to band sharing coefficients based on analyses of minisatellites for adults in local breeding populations. The prey vulnera- bility index was positively correlated with the band sharing coefficient in both predators, even when controlling for potentially confounding variables. These findings indicate that prey species with high band sharing coefficients, and hence low levels of genetic variation, are more readily caught by avian predators. Therefore, predation may constitute a major cost of low levels of genetic variation in extant populations of prey [Current Zoology 61(1): 1-9, 2015].
文摘We study global asymptotic stability for an SIS epidemic model with maturation delay proposed by K. Cooke, P. van den Driessche and X. Zou, Interaction of maturation delay and nonlinear birth in population and epidemic models, J. Math. Biol. 39(4) (1999) 332-352. It is assumed that the population has a nonlinear birth term and disease causes death of infective individuals. By using a monotone iterative method, we establish sufficient conditions for the global stability of an endemic equilibrium when it exists dependently on the monotone property of the birth rate function. Based on the analysis, we further study the model with two specific birth rate functions BI(N) = be-aN and B3(N) = A/N + c, where N denotes the total population. For each model, we obtain the disease induced death rate which guarantees the global stability of the endemic equilibrium and this gives a positive answer for an open problem by X. Q. Zhao and X. Zou, Threshold dynamics in a delayed SIS epidemic model, J. Math. Anal. Appl. 257(2) (2001) 282-291.