[Objective] The genetic diversity of major mango cultivars in China was analyzed by using SSR markers, and their fingerprints were constructed so as to provide theoretical basis for germplasm innovation and breeding o...[Objective] The genetic diversity of major mango cultivars in China was analyzed by using SSR markers, and their fingerprints were constructed so as to provide theoretical basis for germplasm innovation and breeding of mango. [Method] With 115 pairs of SSR primers, genetic diversity analysis and cluster analysis were performed for 30 mango cultivars, among which the genetic relationships were analyzed. [Result] Total 64 pairs of polymorphic primers were screened out from the 115 pairs of primers, and total 343 bands were amplified from the 30 cultivars with 73.2% of polymorphic bands. On average, 3.9 allelic loci were detected for each pair of primers with genetic diversity index of 0.5, Shannon＇s diversity index of 1.00 and polymorphism information content of 0.49, indicating higher genetic diversity. The cluster analysis showed that the 30 major cultivars could be classified into four categories. The first category included 14 cultivars; the second category included 11 cultivars, most of which were introduced from abroad; the third category included 4 cultivars, Le., Miansan, Parayinda, Baiyu and Hongxiangya： the fourth category included only one cultivar Maqiesu.By using 7 pairs of SSR markers, i.e., M42, M49, M54, M55, M96, M99 and M103, digital fingerprints were constructed for the 30 mango cultivars. [Conclusion] The 30 mango cultivars present more complex genomic genetics and abundant genetic information, and they have higher genetic diversity.展开更多
In order to combine feature extraction operations with specific hyperspectral remote sensing information processing objectives,two aspects of feature extraction were explored. Based on clustering and decision tree alg...In order to combine feature extraction operations with specific hyperspectral remote sensing information processing objectives,two aspects of feature extraction were explored. Based on clustering and decision tree algorithm,spectral absorption index (SAI),continuum-removal and derivative spectral analysis were employed to discover characterized spectral features of different targets,and decision trees for identifying a specific class and discriminating different classes were generated. By combining support vector machine (SVM) classifier with different feature extraction strategies including principal component analysis (PCA),minimum noise fraction (MNF),grouping PCA,and derivate spectral analysis,the performance of feature extraction approaches in classification was evaluated. The results show that feature extraction by PCA and derivate spectral analysis are effective to OMIS (operational modular imaging spectrometer) image classification using SVM,and SVM outperforms traditional SAM and MLC classifiers for OMIS data.展开更多
A hybrid feature selection and classification strategy was proposed based on the simulated annealing genetic algonthrn and multiple instance learning （MIL）. The band selection method was proposed from subspace decom...A hybrid feature selection and classification strategy was proposed based on the simulated annealing genetic algonthrn and multiple instance learning （MIL）. The band selection method was proposed from subspace decomposition, which combines the simulated annealing algorithm with the genetic algorithm in choosing different cross-over and mutation probabilities, as well as mutation individuals. Then MIL was combined with image segmentation, clustering and support vector machine algorithms to classify hyperspectral image. The experimental results show that this proposed method can get high classification accuracy of 93.13% at small training samples and the weaknesses of the conventional methods are overcome.展开更多
Wetland databases can provide the basic data that necessary for the protection and management of wetlands. A large number of wetland databases have been established in the world as well as in China. In this paper, we ...Wetland databases can provide the basic data that necessary for the protection and management of wetlands. A large number of wetland databases have been established in the world as well as in China. In this paper, we review China's wetland databases based on remote sensing(RS) technology after introducing the background theory to the application of RS technology in wetland surveys. A key conclusion is that China's wetland databases are far from sufficient in fulfilling protection and management needs. Our recommendations focus on the use of the hyper-spectral imagery, microwave data, multi-temporal images, and automatic classifications in order to improve the accuracy and efficiency of wetland inventory. Further, attention should also be paid to detect major biophysical features of wetlands and build wetland databases in years after the 1980 s in China. Considering that great gap exists between RS experts and wetland experts, further cooperation between wetland scientists and RS scientists are needed to promote the application of RS in the foundation of wetland databases.展开更多
Automatic reading procedures in colon cells biopsies allow a faster and precise reading of microscopic biopsies. These procedures implement automatic image segmentation in order to classify cell types as cancerous or ...Automatic reading procedures in colon cells biopsies allow a faster and precise reading of microscopic biopsies. These procedures implement automatic image segmentation in order to classify cell types as cancerous or noncancerous. The authors have developed a new approach aiming to detect colon cancer cells derived from the ＂Snake＂ method but using a progressive division of the dimensions of the image to achieve rapid segmentation. The aim of the present paper was to classify different cancerous cell types based on nine morphological parameters and on probabilistic neural network. Three types of cells were used to assess the efficiency of our classifications models, including BH （Benign Hyperplasia）, IN （Intraepithelial Neoplasia） that is a precursor state for cancer, and Ca （Carcinoma） that corresponds to abnormal tissue proliferation （cancer）. Results showed that among the nine parameters used to classify cells, only three morphologic parameters （area, Xor convex and solidity） were found to be effective in distinguishing the three types of cells. In addition, classification of unknown cells was possible using this method.展开更多
Land water, one of the important components of land cover, is the indispensable and important basic information for climate change studies, ecological environment assessment, macro-control analysis, etc. This article ...Land water, one of the important components of land cover, is the indispensable and important basic information for climate change studies, ecological environment assessment, macro-control analysis, etc. This article describes the overall study on land water in the program of global land cover remote sensing mapping. Through collection and processing of Landsat TM/ETM+, China's HJ-1 satellite image, etc., the program achieves an effective overlay of global multi-spectral image of 30 m resolution for two base years, namely, 2000 and 2010, with the image rectification accuracy meeting the requirements of 1:200000 mapping and the error in registration of images for the two periods being controlled within 1 pixel. The indexes were designed and selected reasonably based on spectral features and geometric shapes of water on the scale of 30 m resolution, the water information was extracted in an elaborate way by combining a simple and easy operation through pixel-based classification method with a comprehensive utilization of various rules and knowledge through the object-oriented classification method, and finally the classification results were further optimized and improved by the human-computer interaction, thus realizing high-resolution remote sensing mapping of global water. The completed global land water data results, including Global Land 30-water 2000 and Global Land 30-water 2010, are the classification results featuring the highest resolution on a global scale, and the overall accuracy of self-assessment is 96%. These data are the important basic data for developing relevant studies, such as analyzing spatial distribution pattern of global land water, revealing regional difference, studying space-time fluctuation law, and diagnosing health of ecological environment.展开更多
Gastric cancer imposes a considerable health burden worldwide, and its mortality ranks as the second highest for all types of cancers. The limited knowledge of the molecular mechanisms underlying gastric cancer tumori...Gastric cancer imposes a considerable health burden worldwide, and its mortality ranks as the second highest for all types of cancers. The limited knowledge of the molecular mechanisms underlying gastric cancer tumorigenesis hinders the development of therapeutic strategies. However, ongoing collaborative sequencing efforts facilitate molecular classification and unveil the genomic landscape of gastric cancer. Several new drivers and tumorigenic pathways in gastric cancer, including chromatin remodeling genes, Rho A-related pathways, TP53 dysregulation, activation of receptor tyrosine kinases, stem cell pathways and abnormal DNA methylation, have been revealed. These newly identified genomic alterations await translation into clinical diagnosis and targeted therapies. Considering that loss-of-function mutations are intractable, synthetic lethality could be employed when discussing feasible therapeutic strategies. Although many challenges remain to be tackled, we are optimistic regarding improvements in the prognosis and treatment of gastric cancer in the near future.展开更多
An algorithm of hyperspectral remote sensing images classification is proposed based on the frequency spectrum of spectral signature.The spectral signature of each pixel in the hyperspectral image is taken as a discre...An algorithm of hyperspectral remote sensing images classification is proposed based on the frequency spectrum of spectral signature.The spectral signature of each pixel in the hyperspectral image is taken as a discrete signal,and the frequency spectrum is obtained using discrete Fourier transform.The discrepancy of frequency spectrum between ground objects' spectral signatures is visible,thus the difference between frequency spectra of reference and target spectral signature is used to measure the spectral similarity.Canberra distance is introduced to increase the contribution from higher frequency components.Then,the number of harmonics involved in the proposed algorithm is determined after analyzing the frequency spectrum energy cumulative distribution function of ground object.In order to evaluate the performance of the proposed algorithm,two hyperspectral remote sensing images are adopted as experimental data.The proposed algorithm is compared with spectral angle mapper (SAM),spectral information divergence (SID) and Euclidean distance (ED) using the product accuracy,user accuracy,overall accuracy,average accuracy and Kappa coefficient.The results show that the proposed algorithm can be applied to hyperspectral image classification effectively.展开更多
基金Supported by Natural Science Foundation of Hainan Province(34128)Fundamental Scientific Research Funds of Chinese Academy of Tropical Agricultural Sciences(1630032013031)~~
文摘[Objective] The genetic diversity of major mango cultivars in China was analyzed by using SSR markers, and their fingerprints were constructed so as to provide theoretical basis for germplasm innovation and breeding of mango. [Method] With 115 pairs of SSR primers, genetic diversity analysis and cluster analysis were performed for 30 mango cultivars, among which the genetic relationships were analyzed. [Result] Total 64 pairs of polymorphic primers were screened out from the 115 pairs of primers, and total 343 bands were amplified from the 30 cultivars with 73.2% of polymorphic bands. On average, 3.9 allelic loci were detected for each pair of primers with genetic diversity index of 0.5, Shannon＇s diversity index of 1.00 and polymorphism information content of 0.49, indicating higher genetic diversity. The cluster analysis showed that the 30 major cultivars could be classified into four categories. The first category included 14 cultivars; the second category included 11 cultivars, most of which were introduced from abroad; the third category included 4 cultivars, Le., Miansan, Parayinda, Baiyu and Hongxiangya： the fourth category included only one cultivar Maqiesu.By using 7 pairs of SSR markers, i.e., M42, M49, M54, M55, M96, M99 and M103, digital fingerprints were constructed for the 30 mango cultivars. [Conclusion] The 30 mango cultivars present more complex genomic genetics and abundant genetic information, and they have higher genetic diversity.
基金Projects 40401038 and 40871195 supported by the National Natural Science Foundation of ChinaNCET-06-0476 by the Program for New Century Excellent Talents in University20070290516 by the Specialized Research Fund for the Doctoral Program of Higher Education
文摘In order to combine feature extraction operations with specific hyperspectral remote sensing information processing objectives,two aspects of feature extraction were explored. Based on clustering and decision tree algorithm,spectral absorption index (SAI),continuum-removal and derivative spectral analysis were employed to discover characterized spectral features of different targets,and decision trees for identifying a specific class and discriminating different classes were generated. By combining support vector machine (SVM) classifier with different feature extraction strategies including principal component analysis (PCA),minimum noise fraction (MNF),grouping PCA,and derivate spectral analysis,the performance of feature extraction approaches in classification was evaluated. The results show that feature extraction by PCA and derivate spectral analysis are effective to OMIS (operational modular imaging spectrometer) image classification using SVM,and SVM outperforms traditional SAM and MLC classifiers for OMIS data.
文摘A hybrid feature selection and classification strategy was proposed based on the simulated annealing genetic algonthrn and multiple instance learning （MIL）. The band selection method was proposed from subspace decomposition, which combines the simulated annealing algorithm with the genetic algorithm in choosing different cross-over and mutation probabilities, as well as mutation individuals. Then MIL was combined with image segmentation, clustering and support vector machine algorithms to classify hyperspectral image. The experimental results show that this proposed method can get high classification accuracy of 93.13% at small training samples and the weaknesses of the conventional methods are overcome.
基金Under the auspices of National Basic Research Program of China(No.2010CB95090103)Technological Basic Research Program of China(No.2013FY111800)
文摘Wetland databases can provide the basic data that necessary for the protection and management of wetlands. A large number of wetland databases have been established in the world as well as in China. In this paper, we review China's wetland databases based on remote sensing(RS) technology after introducing the background theory to the application of RS technology in wetland surveys. A key conclusion is that China's wetland databases are far from sufficient in fulfilling protection and management needs. Our recommendations focus on the use of the hyper-spectral imagery, microwave data, multi-temporal images, and automatic classifications in order to improve the accuracy and efficiency of wetland inventory. Further, attention should also be paid to detect major biophysical features of wetlands and build wetland databases in years after the 1980 s in China. Considering that great gap exists between RS experts and wetland experts, further cooperation between wetland scientists and RS scientists are needed to promote the application of RS in the foundation of wetland databases.
文摘Automatic reading procedures in colon cells biopsies allow a faster and precise reading of microscopic biopsies. These procedures implement automatic image segmentation in order to classify cell types as cancerous or noncancerous. The authors have developed a new approach aiming to detect colon cancer cells derived from the ＂Snake＂ method but using a progressive division of the dimensions of the image to achieve rapid segmentation. The aim of the present paper was to classify different cancerous cell types based on nine morphological parameters and on probabilistic neural network. Three types of cells were used to assess the efficiency of our classifications models, including BH （Benign Hyperplasia）, IN （Intraepithelial Neoplasia） that is a precursor state for cancer, and Ca （Carcinoma） that corresponds to abnormal tissue proliferation （cancer）. Results showed that among the nine parameters used to classify cells, only three morphologic parameters （area, Xor convex and solidity） were found to be effective in distinguishing the three types of cells. In addition, classification of unknown cells was possible using this method.
基金supported by the National High-Tech R&D Program of China(Grant Nos.2009AA122003 and 2009AA122001)
文摘Land water, one of the important components of land cover, is the indispensable and important basic information for climate change studies, ecological environment assessment, macro-control analysis, etc. This article describes the overall study on land water in the program of global land cover remote sensing mapping. Through collection and processing of Landsat TM/ETM+, China's HJ-1 satellite image, etc., the program achieves an effective overlay of global multi-spectral image of 30 m resolution for two base years, namely, 2000 and 2010, with the image rectification accuracy meeting the requirements of 1:200000 mapping and the error in registration of images for the two periods being controlled within 1 pixel. The indexes were designed and selected reasonably based on spectral features and geometric shapes of water on the scale of 30 m resolution, the water information was extracted in an elaborate way by combining a simple and easy operation through pixel-based classification method with a comprehensive utilization of various rules and knowledge through the object-oriented classification method, and finally the classification results were further optimized and improved by the human-computer interaction, thus realizing high-resolution remote sensing mapping of global water. The completed global land water data results, including Global Land 30-water 2000 and Global Land 30-water 2010, are the classification results featuring the highest resolution on a global scale, and the overall accuracy of self-assessment is 96%. These data are the important basic data for developing relevant studies, such as analyzing spatial distribution pattern of global land water, revealing regional difference, studying space-time fluctuation law, and diagnosing health of ecological environment.
基金supported by the Science and Technology Commission of Shanghai Municipality (16ZR1410400, 14DZ2270100)the State Scholarship Council (201506145040)
文摘Gastric cancer imposes a considerable health burden worldwide, and its mortality ranks as the second highest for all types of cancers. The limited knowledge of the molecular mechanisms underlying gastric cancer tumorigenesis hinders the development of therapeutic strategies. However, ongoing collaborative sequencing efforts facilitate molecular classification and unveil the genomic landscape of gastric cancer. Several new drivers and tumorigenic pathways in gastric cancer, including chromatin remodeling genes, Rho A-related pathways, TP53 dysregulation, activation of receptor tyrosine kinases, stem cell pathways and abnormal DNA methylation, have been revealed. These newly identified genomic alterations await translation into clinical diagnosis and targeted therapies. Considering that loss-of-function mutations are intractable, synthetic lethality could be employed when discussing feasible therapeutic strategies. Although many challenges remain to be tackled, we are optimistic regarding improvements in the prognosis and treatment of gastric cancer in the near future.
基金supported by the National Basic Research Program of China ("973" Program) (Grant No. 2010CB950800)International S&T Cooperation Program of China (Grant No. 2010DFA21880)China Postdoctoral Science Foundation (Grant No. 2012M510053)
文摘An algorithm of hyperspectral remote sensing images classification is proposed based on the frequency spectrum of spectral signature.The spectral signature of each pixel in the hyperspectral image is taken as a discrete signal,and the frequency spectrum is obtained using discrete Fourier transform.The discrepancy of frequency spectrum between ground objects' spectral signatures is visible,thus the difference between frequency spectra of reference and target spectral signature is used to measure the spectral similarity.Canberra distance is introduced to increase the contribution from higher frequency components.Then,the number of harmonics involved in the proposed algorithm is determined after analyzing the frequency spectrum energy cumulative distribution function of ground object.In order to evaluate the performance of the proposed algorithm,two hyperspectral remote sensing images are adopted as experimental data.The proposed algorithm is compared with spectral angle mapper (SAM),spectral information divergence (SID) and Euclidean distance (ED) using the product accuracy,user accuracy,overall accuracy,average accuracy and Kappa coefficient.The results show that the proposed algorithm can be applied to hyperspectral image classification effectively.
