[Objective]The research aimed to explore the bioturbation effects of benthic fish Misgurnus anguillicaudatus on soil microorganism(microflora,biomass,and special physiological groups) of paddy field.[Method]The expe...[Objective]The research aimed to explore the bioturbation effects of benthic fish Misgurnus anguillicaudatus on soil microorganism(microflora,biomass,and special physiological groups) of paddy field.[Method]The experiments were conducted locally and quantitatively in field,using plate count and MPN methods.[Result]In the microflora of paddy soil tested,the quantity of bacteria is the largest,followed by actinomycetes and fungus.Compared with the control paddy fields,in rice-fish paddy fields the quantities of bacteria,actinomycetes and fungus were higher,at significance level P 〈0.05,P 〈0.01,and P 〈0.01 respectively.The microbial biomass C and N in rice-fish paddy fields is remarkably higher than those in control paddy fields,both at significance level P 〈0.01;the microbial biomass P in rice-fish paddy fields is higher than that in control paddy fields,but at significance level P 〈0.05.Benthic fish promotes the growth of soil azotobacter,cellulolytic bacteria,nitrobacteria,sulfur bacteria,and ammonifying bacteria,restricts the reproduction of nitrate reducing bacteria and sulfate reducing bacteria.[Conclusion]The benthic fish had important effects on microflora,microbial biomass,and special microorganism physiological groups of paddy soil,improves the living conditions of soil microorganisms,promotes the soil fertility and bio-chemical activity,which is beneficial for improving the supply ability of soil nutrients such as N,P,S,as well as the efficiency of nutrient utilization.展开更多
Soil microbial communities are primarily regulated by environmental temperature. Our study investigated the effects of global warming on soil microbial community composition as measured via phospholipid fatty acid (P...Soil microbial communities are primarily regulated by environmental temperature. Our study investigated the effects of global warming on soil microbial community composition as measured via phospholipid fatty acid (PLFA) analysis and soil chemical characteristics in relation to soil depth in a dragon spruce plantation and a spruce-fir-dominated natural forestin the Eastern Tibetan Plateau. Opentop chambers were utilized to increase the soil and air temperature. Soil samples were collected from the o-10 cm, 10-20cm, and 20-30 cm layers after a 4-year warming. Our results showed that the soil microbial community and the contents of TC (Total carbon), TN (Total nitrogen). NO3-. and NH4+ responded differently to warming in the two contrasting forests, especially at the 0-10 cm soil depth. Warming increased soil microbial biomass at the 0-20 cm depth of soil in natural forest but reduced it at the o-lo cm depth ofsoil in the plantation. In contrast, the TC and TN contents were reduced in most soil layers of a natural forest but increased in all of the soil layers of the plantation under warming conditions. This result suggested that the effects of warming on soil microbial community and soil C and N pools would differ according to soil depth and forest types; thus, the two contrasting forests would under go differing changes following the future climate warming in this region.展开更多
A series of pot experiments and field trials were carried out to evaluate the effects of arbuscular mycor- rhizal fungi (AMF) on activities of soil enzymes and carbon sequestration capacity in reclaimed mine soil. A...A series of pot experiments and field trials were carried out to evaluate the effects of arbuscular mycor- rhizal fungi (AMF) on activities of soil enzymes and carbon sequestration capacity in reclaimed mine soil. A complex substrate of coal gangue, fly ash and sludge was used as reclaimed mine soil, and ryegrass was planted with AMF inoculation to construct a plant-complex substrate-microbe ecological restoration sys- tem. The changes to the soil organic carbon (SOC), activities of soil enzymes and glomalin-related soil protein (GRSP) were measured and the effects of AMF on activities of soil enzymes and carbon sequestra- tion capacity (n reclaimed mine soil were analyzed. The results show that the contents of GRSP (total glo- malin (TG) and easily extractable glomalin (EEG)), SOC and activities of enzymes increased, and the increments were higher in the AMF inoculation treated plant-complex substrate-microbe ecological res- toration systems than those with no AMF inoculated treatments after 12 months of ryegrass growth. TG, EEG and soil enzyme activity have a significant positive correlation, and the correlative coefficient was 0.427-0.573; SOC and TG, EEG have a significant positive correlation (p 〈 0.01 ), indicating that AMF plays an important role in carbon sequestration of reclaimed mine soils.展开更多
Iron oxidation is a prevalent and important biogeochemical process in paddy soil,but little is known about whether and how microbially mediated iron oxidation is coupled with carbon assimilation,particularly under mic...Iron oxidation is a prevalent and important biogeochemical process in paddy soil,but little is known about whether and how microbially mediated iron oxidation is coupled with carbon assimilation,particularly under microaerobic conditions.Here,we investigated kinetics of CO_2 assimilation and Fe(Ⅱ)oxidation in an incubation experiment with paddy soil under suboxic conditions,and profiled the associated microbial community using DNA-stable isotope probing and 16S r RNA gene-based sequencing.The results showed that CO_2 assimilation and Fe(II)oxidation in the gradient tubes were predominantly mediated by the microbes enriched in the paddy soil,primarily Azospirillum and Magnetospirillum,as their relative abundances were higher in the^( 13)C heavy fractions compared to^( 12)C heavy fractions.This study provided direct evidence of chemoautotrophic microaerophiles linking iron oxidation and carbon assimilation at the oxic–anoxic interface in the paddy soil ecosystem.展开更多
The expected rise in temperature and decreased precipitation owing to climate change and unabated anthropogenic activities add complexity and uncertainty to agro-industry. The impact of soil nutrient imbalance, misman...The expected rise in temperature and decreased precipitation owing to climate change and unabated anthropogenic activities add complexity and uncertainty to agro-industry. The impact of soil nutrient imbalance, mismanaged use of chemicals, high temperature, flood or drought, soil salinity, and heavy metal pollutions, with regard to food security, is increasingly being explored worldwide. This review describes the role of soil-plant-microbe interactions along with organic manure in solving stressed agriculture problems. Beneficial microbes associated with plants are known to stimulate plant growth and enhance plant resistance to biotic (diseases) and abiotic (salinity, drought, pollutions, etc.) stresses. The plant growth-promoting rhizobemteria (PGPR) and mycorrhizae, a key component of soil microbiota, could play vital roles in the maintenance of plant fitness and soil health under stressed environments. The application of organic manure as a soil conditioner to stressed soils along with suitable microbial strains could further enhance the plant-microbe associations and increase the crop yield. A combination of plant, stress-tolerant microbe, and organic amendment represents the tripartite association to offer a favourable environment to the proliferation of beneficial rhizosphere microbes that in turn enhance the plant growth performance in disturbed agro-ecosystem. Agriculture land use patterns with the proper exploitation of plant-microbe associations, with compatible beneficial microbial agents, could be one of the most effective strategies in the management of the concerned agriculture lands owing to climate change resilience. However, the association of such microbes with plants for stressed agriculture management still needs to be explored in greater depth.展开更多
The responses of soil microbes to global warming and nitrogen enrichment can profoundly affect terrestrial ecosystem functions and the ecosystem feedbacks to climate change.However,the interactive effect of warming an...The responses of soil microbes to global warming and nitrogen enrichment can profoundly affect terrestrial ecosystem functions and the ecosystem feedbacks to climate change.However,the interactive effect of warming and nitrogen enrichment on soil microbial community is unclear.In this study,individual and interactive effects of experimental warming and nitrogen addition on the soil microbial community were investigated in a long-term field experiment in a temperate steppe of northern China.The field experiment started in 2006 and soils were sampled in 2010 and analyzed for phospholipid fatty acids to characterize the soil microbial communities.Some soil chemical properties were also determined.Five-year experimental warming significantly increased soil total microbial biomass and the proportion of Gram-negative bacteria in the soils.Long-term nitrogen addition decreased soil microbial biomass at the 0-10 cm soil depth and the relative abundance of arbuscular mycorrhizal fungi in the soils.Little interactive effect on soil microbes was detected when experimental warming and nitrogen addition were combined.Soil microbial biomass positively correlated with soil total C and N,but basically did not relate to the soil C/N ratio and pH.Our results suggest that future global warming or nitrogen enrichment may significantly change the soil microbial communities in the temperate steppes in northern China.展开更多
The influences of herbicide alone and in combination with the soil amendments with contrasting resource qualities on dynamics of soil microbial biomass C (MBC), N (MBN), and P (MBP) were studied through two annu...The influences of herbicide alone and in combination with the soil amendments with contrasting resource qualities on dynamics of soil microbial biomass C (MBC), N (MBN), and P (MBP) were studied through two annual cycles in rice-wheat-summer fallow crop sequence in a tropical dryland agroecosystem. The experiment included application of herbicide (butachlor) alone or in combination with various soil amendments having equivalent amount of N in the forms of chemical fertilizer, wheat straw, Sesbania aculeata, and farm yard manure (FYM). Soil microbial biomass showed distinct temporal variations in both crop cycles, decreased from vegetative to grain-forming stage, and then increased to maximum at crop maturity stage. Soil MBC was the highest in herbicide + Sesbania aculeata treatment followed by herbicide + FYM, herbicide + wheat straw, herbicide + chemical fertilizer, and herbicide alone treatments in decreasing order during the rice-growing period. During wheat-growing period and summer fallow, soil MBC attained maximum for herbicide + wheat straw treatment whereas herbicide + FYM, herbicide + Sesbania, and herbicide + chemical fertilizer treatments showed similar levels. The overall trend of soil MBN was similar to those of soil MBC and MBP except that soil MBN was higher in herbicide + chemical fertilizer treatment over the herbicide + wheat straw treatment during rice-growing period. In spite of the addition of equivalent amount of N through exogenous soil amendments in combination with the herbicide, soil microbial biomass responded differentially to the treatments. The resource quality of the amendments had more pronounced impact on the dynamics of soil microbial biomass, which may have implications for long-term sustainability of rainfed agroecosystems in dry tropics.展开更多
A number of basic and applied questions in ecology and environmental management require the characterization of soil and leaf litter faunal diversity. Recent advances in high-throughput sequencing of barcode-gene ampl...A number of basic and applied questions in ecology and environmental management require the characterization of soil and leaf litter faunal diversity. Recent advances in high-throughput sequencing of barcode-gene amplicons ('metabarcoding') have made it possible to survey biodiversity in a robust and efficient way. However, one obstacle to the widespread adoption of this technique is the need to choose amongst many candidates for bioinformatic processing of the raw sequencing data. We compare three candidate pipelines for the processing of 18S small subunit rDNA metabarcode data from solid substrates: (i) USEARCH/CROP, (ii) Denoiser/UCLUST, and (iii) OCTUPUS. The three pipelines produced reassuringly similar and highly correlated assessments of community composition that are dominated by taxa known to characterize the sampled environments. However, OCTUPUS appears to inflate phylogenetic diversity, because of higher sequence noise. We therefore recommend either the USEARCH/CROP or Denoiser/UCLUST pipelines, both of which can be run within the QIIME (Quantitative Insights Into Microbial Ecology) environment.展开更多
Root exudates,microorganism colonization and soil aggregates together form the rhizosheath,a special cylinder of micro-ecosystem adhering to the root surface.To study how the rhizosheath affects soil structure and nut...Root exudates,microorganism colonization and soil aggregates together form the rhizosheath,a special cylinder of micro-ecosystem adhering to the root surface.To study how the rhizosheath affects soil structure and nutrient distribution,we analyzed the impact of maize rhizosheath on soil particle size and nutrient availability in pot and field experiments.The results showed that there was a significant size decrease of soil particles in the rhizosheath.Meanwhile,the soil mineral nitrogen in the rhizosheath was significantly higher than that in the rhizosphere or bulk soil at tasseling and maturity stages of maize.The contents of Fe and Mn were also differentially altered in the rhizosheath.Rhizosheath development,indicated by a dry weight ratio of rhizosheath soil to the root,was relatively independent of root development during the whole experimental period.The formation of maize rhizosheath contributed to the modulation of soil particle size and nutrient availability.The subtle local changes of soil physical and chemical properties may have profound influence on soil formation,rhizospheric ecosystem initiation,and mineral nutrient mobilization over the long history of plant evolution and domestication.展开更多
基金Supported by Human Resources and Social Security Department Students Abroad Science and Technology Activities Preferred Foundation (Human and Social Council Issued 2008-86)Talent Development Fund Project in Jilin Province (Jilin 2007-259)+6 种基金Jilin Province Science and Technology Development Project (20060577 )Technology Project Jilin Provincial Ministry of Education (200943520061132007169)The Project Sponsored by the Scientific Research Foundation for the Returned Overseas Chinese Scholars,State Education Ministry (2005-546 )Science Foundation of Changchun Teachers University (2009002)Northeast Normal University Natural Science Foundation for Young Scholar (20050406)~~
文摘[Objective]The research aimed to explore the bioturbation effects of benthic fish Misgurnus anguillicaudatus on soil microorganism(microflora,biomass,and special physiological groups) of paddy field.[Method]The experiments were conducted locally and quantitatively in field,using plate count and MPN methods.[Result]In the microflora of paddy soil tested,the quantity of bacteria is the largest,followed by actinomycetes and fungus.Compared with the control paddy fields,in rice-fish paddy fields the quantities of bacteria,actinomycetes and fungus were higher,at significance level P 〈0.05,P 〈0.01,and P 〈0.01 respectively.The microbial biomass C and N in rice-fish paddy fields is remarkably higher than those in control paddy fields,both at significance level P 〈0.01;the microbial biomass P in rice-fish paddy fields is higher than that in control paddy fields,but at significance level P 〈0.05.Benthic fish promotes the growth of soil azotobacter,cellulolytic bacteria,nitrobacteria,sulfur bacteria,and ammonifying bacteria,restricts the reproduction of nitrate reducing bacteria and sulfate reducing bacteria.[Conclusion]The benthic fish had important effects on microflora,microbial biomass,and special microorganism physiological groups of paddy soil,improves the living conditions of soil microorganisms,promotes the soil fertility and bio-chemical activity,which is beneficial for improving the supply ability of soil nutrients such as N,P,S,as well as the efficiency of nutrient utilization.
基金supported by the National Natural Science Foundation of China(Grant Nos.31570477,31100446)the Research Fund of the Ecological Security and Protection Key Laboratory of Sichuan Province,Mianyang Normal University(Grant No.EPS201302)the Research Fund of State Key Laboratory of Soil and Sustainable Agriculture,Nanjing Institute of Soil Science,Chinese Academy of Science(Grant No.Y412201415)
文摘Soil microbial communities are primarily regulated by environmental temperature. Our study investigated the effects of global warming on soil microbial community composition as measured via phospholipid fatty acid (PLFA) analysis and soil chemical characteristics in relation to soil depth in a dragon spruce plantation and a spruce-fir-dominated natural forestin the Eastern Tibetan Plateau. Opentop chambers were utilized to increase the soil and air temperature. Soil samples were collected from the o-10 cm, 10-20cm, and 20-30 cm layers after a 4-year warming. Our results showed that the soil microbial community and the contents of TC (Total carbon), TN (Total nitrogen). NO3-. and NH4+ responded differently to warming in the two contrasting forests, especially at the 0-10 cm soil depth. Warming increased soil microbial biomass at the 0-20 cm depth of soil in natural forest but reduced it at the o-lo cm depth ofsoil in the plantation. In contrast, the TC and TN contents were reduced in most soil layers of a natural forest but increased in all of the soil layers of the plantation under warming conditions. This result suggested that the effects of warming on soil microbial community and soil C and N pools would differ according to soil depth and forest types; thus, the two contrasting forests would under go differing changes following the future climate warming in this region.
基金supported by the Environmental Science andTechnology Fund of Environmental Protection Department of Jiangsu Province,China (No. 2007024)
文摘A series of pot experiments and field trials were carried out to evaluate the effects of arbuscular mycor- rhizal fungi (AMF) on activities of soil enzymes and carbon sequestration capacity in reclaimed mine soil. A complex substrate of coal gangue, fly ash and sludge was used as reclaimed mine soil, and ryegrass was planted with AMF inoculation to construct a plant-complex substrate-microbe ecological restoration sys- tem. The changes to the soil organic carbon (SOC), activities of soil enzymes and glomalin-related soil protein (GRSP) were measured and the effects of AMF on activities of soil enzymes and carbon sequestra- tion capacity (n reclaimed mine soil were analyzed. The results show that the contents of GRSP (total glo- malin (TG) and easily extractable glomalin (EEG)), SOC and activities of enzymes increased, and the increments were higher in the AMF inoculation treated plant-complex substrate-microbe ecological res- toration systems than those with no AMF inoculated treatments after 12 months of ryegrass growth. TG, EEG and soil enzyme activity have a significant positive correlation, and the correlative coefficient was 0.427-0.573; SOC and TG, EEG have a significant positive correlation (p 〈 0.01 ), indicating that AMF plays an important role in carbon sequestration of reclaimed mine soils.
基金funded by the National Natural Science Foundations of China(41420104007,41330857,and 41701295)Guangdong Natural Science Funds for Distinguished Young Scholar(2014A030306041)and Special Support Program(2016)
文摘Iron oxidation is a prevalent and important biogeochemical process in paddy soil,but little is known about whether and how microbially mediated iron oxidation is coupled with carbon assimilation,particularly under microaerobic conditions.Here,we investigated kinetics of CO_2 assimilation and Fe(Ⅱ)oxidation in an incubation experiment with paddy soil under suboxic conditions,and profiled the associated microbial community using DNA-stable isotope probing and 16S r RNA gene-based sequencing.The results showed that CO_2 assimilation and Fe(II)oxidation in the gradient tubes were predominantly mediated by the microbes enriched in the paddy soil,primarily Azospirillum and Magnetospirillum,as their relative abundances were higher in the^( 13)C heavy fractions compared to^( 12)C heavy fractions.This study provided direct evidence of chemoautotrophic microaerophiles linking iron oxidation and carbon assimilation at the oxic–anoxic interface in the paddy soil ecosystem.
文摘The expected rise in temperature and decreased precipitation owing to climate change and unabated anthropogenic activities add complexity and uncertainty to agro-industry. The impact of soil nutrient imbalance, mismanaged use of chemicals, high temperature, flood or drought, soil salinity, and heavy metal pollutions, with regard to food security, is increasingly being explored worldwide. This review describes the role of soil-plant-microbe interactions along with organic manure in solving stressed agriculture problems. Beneficial microbes associated with plants are known to stimulate plant growth and enhance plant resistance to biotic (diseases) and abiotic (salinity, drought, pollutions, etc.) stresses. The plant growth-promoting rhizobemteria (PGPR) and mycorrhizae, a key component of soil microbiota, could play vital roles in the maintenance of plant fitness and soil health under stressed environments. The application of organic manure as a soil conditioner to stressed soils along with suitable microbial strains could further enhance the plant-microbe associations and increase the crop yield. A combination of plant, stress-tolerant microbe, and organic amendment represents the tripartite association to offer a favourable environment to the proliferation of beneficial rhizosphere microbes that in turn enhance the plant growth performance in disturbed agro-ecosystem. Agriculture land use patterns with the proper exploitation of plant-microbe associations, with compatible beneficial microbial agents, could be one of the most effective strategies in the management of the concerned agriculture lands owing to climate change resilience. However, the association of such microbes with plants for stressed agriculture management still needs to be explored in greater depth.
基金Supported by the National Key Research and Development Program(973 Program)of China(No.2012CB417103)the Forestry Department of Qinghai Province,China(No.Y22LO300AJ)
文摘The responses of soil microbes to global warming and nitrogen enrichment can profoundly affect terrestrial ecosystem functions and the ecosystem feedbacks to climate change.However,the interactive effect of warming and nitrogen enrichment on soil microbial community is unclear.In this study,individual and interactive effects of experimental warming and nitrogen addition on the soil microbial community were investigated in a long-term field experiment in a temperate steppe of northern China.The field experiment started in 2006 and soils were sampled in 2010 and analyzed for phospholipid fatty acids to characterize the soil microbial communities.Some soil chemical properties were also determined.Five-year experimental warming significantly increased soil total microbial biomass and the proportion of Gram-negative bacteria in the soils.Long-term nitrogen addition decreased soil microbial biomass at the 0-10 cm soil depth and the relative abundance of arbuscular mycorrhizal fungi in the soils.Little interactive effect on soil microbes was detected when experimental warming and nitrogen addition were combined.Soil microbial biomass positively correlated with soil total C and N,but basically did not relate to the soil C/N ratio and pH.Our results suggest that future global warming or nitrogen enrichment may significantly change the soil microbial communities in the temperate steppes in northern China.
基金financially supported by University Grants Commission,New Delhi,India in form of a major research project(No.SR36-32 2008) and University Research Fellowships to Ms.Alka Singh and Mr.Mahesh Kumar Singh
文摘The influences of herbicide alone and in combination with the soil amendments with contrasting resource qualities on dynamics of soil microbial biomass C (MBC), N (MBN), and P (MBP) were studied through two annual cycles in rice-wheat-summer fallow crop sequence in a tropical dryland agroecosystem. The experiment included application of herbicide (butachlor) alone or in combination with various soil amendments having equivalent amount of N in the forms of chemical fertilizer, wheat straw, Sesbania aculeata, and farm yard manure (FYM). Soil microbial biomass showed distinct temporal variations in both crop cycles, decreased from vegetative to grain-forming stage, and then increased to maximum at crop maturity stage. Soil MBC was the highest in herbicide + Sesbania aculeata treatment followed by herbicide + FYM, herbicide + wheat straw, herbicide + chemical fertilizer, and herbicide alone treatments in decreasing order during the rice-growing period. During wheat-growing period and summer fallow, soil MBC attained maximum for herbicide + wheat straw treatment whereas herbicide + FYM, herbicide + Sesbania, and herbicide + chemical fertilizer treatments showed similar levels. The overall trend of soil MBN was similar to those of soil MBC and MBP except that soil MBN was higher in herbicide + chemical fertilizer treatment over the herbicide + wheat straw treatment during rice-growing period. In spite of the addition of equivalent amount of N through exogenous soil amendments in combination with the herbicide, soil microbial biomass responded differentially to the treatments. The resource quality of the amendments had more pronounced impact on the dynamics of soil microbial biomass, which may have implications for long-term sustainability of rainfed agroecosystems in dry tropics.
基金supported by Yunnan Province (20080A001)Chinese Academy of Sciences (0902281081,KSCX2-YW-Z-1027)+2 种基金the National Natural Science Foundation of China (31170498)Ministry of Science and Technology of China (2012FY110800)Kunming Institute of Zoology,and the University of East Anglia
文摘A number of basic and applied questions in ecology and environmental management require the characterization of soil and leaf litter faunal diversity. Recent advances in high-throughput sequencing of barcode-gene amplicons ('metabarcoding') have made it possible to survey biodiversity in a robust and efficient way. However, one obstacle to the widespread adoption of this technique is the need to choose amongst many candidates for bioinformatic processing of the raw sequencing data. We compare three candidate pipelines for the processing of 18S small subunit rDNA metabarcode data from solid substrates: (i) USEARCH/CROP, (ii) Denoiser/UCLUST, and (iii) OCTUPUS. The three pipelines produced reassuringly similar and highly correlated assessments of community composition that are dominated by taxa known to characterize the sampled environments. However, OCTUPUS appears to inflate phylogenetic diversity, because of higher sequence noise. We therefore recommend either the USEARCH/CROP or Denoiser/UCLUST pipelines, both of which can be run within the QIIME (Quantitative Insights Into Microbial Ecology) environment.
基金Supported by the National Natural Science Foundation of China (No. 30671237),the Innovative Group Grant of the National Natural Science Foundation of China (No. 30821003)the National Basic Research Program(973 Program) of China (No. 2007CB109302)
文摘Root exudates,microorganism colonization and soil aggregates together form the rhizosheath,a special cylinder of micro-ecosystem adhering to the root surface.To study how the rhizosheath affects soil structure and nutrient distribution,we analyzed the impact of maize rhizosheath on soil particle size and nutrient availability in pot and field experiments.The results showed that there was a significant size decrease of soil particles in the rhizosheath.Meanwhile,the soil mineral nitrogen in the rhizosheath was significantly higher than that in the rhizosphere or bulk soil at tasseling and maturity stages of maize.The contents of Fe and Mn were also differentially altered in the rhizosheath.Rhizosheath development,indicated by a dry weight ratio of rhizosheath soil to the root,was relatively independent of root development during the whole experimental period.The formation of maize rhizosheath contributed to the modulation of soil particle size and nutrient availability.The subtle local changes of soil physical and chemical properties may have profound influence on soil formation,rhizospheric ecosystem initiation,and mineral nutrient mobilization over the long history of plant evolution and domestication.